jgi.p|Nanoce1779_2|578942, mRNA_2071 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578942
Unique Name	mRNA_2071
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1339
Alignment location	scaffold_4:704790..706564 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579028
Track	FilteredModels2
ProteinId	578942

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:704790..706564 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578942	gene_2071	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578942	mRNA_2071-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2071	CDS_2071	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:704790..706564+
coding sequence from alignment at scaffold_4:704790..706564+

mRNA sequence

>mRNA_2071 ID=mRNA_2071|Name=jgi.p|Nanoce1779_2|578942|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp
GGAGACACGGGACGCAACAAGTCGGACGGGGAAGGTCAGCGCAGCACACA
CCGGAGGCAACACGCTCTCTCTGCCTTGGCGCCCATCGTTCCGACGCCCA
TCATAGTAATCAATCAGTTGCACCCGTGCCGCATCATCGACCTAGCCAGC
AGCAACCATGACCCTTGACGTTTCCAACCTGGGACAGACGGAGTGGCAAG
ATCTGGACGTGAAGAAGCTATTGATCATCTCCTCTTTTGCCACTGTATTC
GAAAACTCGATATATTGGCCTATGTGGGCGATGAAGACTCGGCAGCAAGT
GCAGACCGGGGCCGTCACTCAGTCCCTGAGCATTCGCAGCATGGGAGGTA
TCAGGTCACTCTACAAGGGCTTCCTCTTCTATGCCGTCGCGAGCCTCCCA
GCCTATTTAGTATATATCAGCACATACACCTACGCTAAGAGTGCTCTGGG
CTTGCATTATGATTCCAGTCCTGCCAACGGCTTTCCTGCCGAAACGGTTC
CTGAGCCGTCCTTCCAGCAAACTATGGCTCCCATGTTTGCCGGGTTTATT
GCGGACGCGGCCTGCTTGGCTCTTTACATACCAGTGGAGATTGTAGCGCA
GCGCTTGCAACTTCCCACGCGATATTCGGGCGTGCAGCAGGTTCTGACAG
ACATGTGGCGAGAAGACGGTGTGCGCACTTTCTACCGAGGTTTCGGGGCG
ACTCTTGTTACCTCTGGCATTGCGTCTGGCGTCTGGTGGCAGAGTTATGA
GTCCTTTAAATCCCTATTTACCGTCCTGGCTCGCGAGCACATCCCCCCAT
CCAAACCAAACCCTACACCCGTACCTGAATCTGCGGTCTTGTCTCCTTTC
TCGTCGACAGAGCGCATGCTTGAGCAAGTCGCTGACGTTTTGGCAACGAT
CCGCCAGTCCCTTCCTCACATGGCCGCCGGCTTGTTCGCCGGGGGATTGA
GTGCCCTGGCGACAAATCCTTTTGATGTGGCCAAGACGAGGCTGCAGACC
CAGCATGTGAAGCCTGGACCGTTGACTTATATTAGGAGCTTGAAGACCAT
TTTGCAAACAGAGGGGTTACGTCAATCTTTTTTGCGGGGCCTTGCGCCTA
AGCTGGTGTCAAGCGCACCGCTTGGGATGCTATCTTCCGTCATCTATGAG
GGAATCTTGTTTTGGAGTCGGAAAGACAGCAGCGAATGGAAAAGTTATGG
TGCTAGCACCGAAACTGCCGAGAAGAAGAAGAAAACAACTGCGGGGGAGA
AGGAGATGTAGCGACACAAAATTGGTTGGAAAAAGAGACAGTAACAAAGT
TTTGGTTGCGGTGAAGGAACGAAATACCCGAAATTCTGA

protein sequence of jgi.p|Nanoce1779_2|578942

>mRNA_2071-protein ID=mRNA_2071-protein|Name=jgi.p|Nanoce1779_2|578942|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MTLDVSNLGQTEWQDLDVKKLLIISSFATVFENSIYWPMWAMKTRQQVQT
GAVTQSLSIRSMGGIRSLYKGFLFYAVASLPAYLVYISTYTYAKSALGLH
YDSSPANGFPAETVPEPSFQQTMAPMFAGFIADAACLALYIPVEIVAQRL
QLPTRYSGVQQVLTDMWREDGVRTFYRGFGATLVTSGIASGVWWQSYESF
KSLFTVLAREHIPPSKPNPTPVPESAVLSPFSSTERMLEQVADVLATIRQ
SLPHMAAGLFAGGLSALATNPFDVAKTRLQTQHVKPGPLTYIRSLKTILQ
TEGLRQSFLRGLAPKLVSSAPLGMLSSVIYEGILFWSRKDSSEWKSYGAS
TETAEKKKKTTAGEKEM*

mRNA from alignment at scaffold_4:704790..706564+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2071 ID=mRNA_2071|Name=jgi.p|Nanoce1779_2|578942|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at scaffold_4:704790..706564+ (Nannochloropsis oceanica)
GGAGACACGGGACGCAACAAGTCGGACGGGGAAGGTCAGCGCAGCACACA
CCGGAGGCAACACGCTCTCTCTGCCTTGGCGCCCATCGTTCCGACGCCCA
TCATAGTAATCAATCAGTTGCACCCGTGCCGCATCATCGACCTAGCCAGC
AGCAACCATGACCCTTGACGTTTCCAACCTGGGACAGACGGAGTGGCAAG
ATCTGGACGTGAAGAAGCTATTGATCATCTCCTCTTTTGCCACTGGTAAG
TTTGCACTTCATTCTCCAACGCATACACAAACATATGTACCAAAGGTGGG
CACACGGCCTCTGTCGGGCTGTGGAGCCGGCAGGGAGCGTAGCATATCAT
TCGTATGTGTCGTGTGGCGAAGATTTGAAGATTTGTGCACCTGTAATTTC
AAAGTGCATACCTTGTTTGGGGGGAAGGCGCATCTTACCCATAGGTGACA
GCAATGCCCACCCATAAATGAAATACTTGCCTATGTGCCCGAGTCTGATG
TTGACCTTCTCGCCAACCCGCTTACCCAACTCAGTATTCGAAAACTCGAT
ATATTGGCCTATGTGGGCGATGAAGACTCGGCAGCAAGTGCAGACCGGGG
CCGTCACTCAGTCCCTGAGCATTCGCAGCATGGGAGGTATCAGGTCACTC
TACAAGGGCTTCCTCTTCTATGCCGTCGCGAGCCTCCCAGCCTATTTAGT
ATATATCAGCACATACACCTACGCTAAGAGTGCTCTGGGCTTGCATTATG
ATTCCAGTCCTGCCAACGGCTTTCCTGCCGAAACGGTTCCTGAGCCGTCC
TTCCAGCAAACTATGGCTCCCATGTTTGCCGGGTTTATTGCGGACGCGGC
CTGCTTGGCTCTTTACATACCAGTGGAGATTGTAGCGCAGCGCTTGCAAC
TTCCCACGCGATATTCGGGCGTGCAGCAGGTTCTGACAGACATGTGGCGA
GAAGACGGTAAGTGGAAAGAGGAAGTAAGGGCATACGGGGAAAGATGAAA
CAAGAGGGGACATTTCTGCGGTATGAGAGTTTCTCACAAGCAGTGATATT
TAAACTCTGACCCCATATGCAACCGTCTCTGTCTCCCCCCGCACACTTTC
GCAGGTGTGCGCACTTTCTACCGAGGTTTCGGGGCGACTCTTGTTACCTC
TGGCATTGCGTCTGGCGTCTGGTGGCAGAGTTATGAGTCCTTTAAATCCC
TATTTACCGTCCTGGCTCGCGAGCACATCCCCCCATCCAAACCAAACCCT
ACACCCGTACCTGAATCTGCGGTCTTGTCTCCTTTCTCGTCGACAGAGCG
CATGCTTGAGCAAGTCGCTGACGTTTTGGCAACGATCCGCCAGTCCCTTC
CTCACATGGCCGCCGGCTTGTTCGCCGGGGGATTGAGTGCCCTGGCGACA
AATCCTTTTGATGTGGCCAAGACGAGGCTGCAGACCCAGCATGTGAAGCC
TGGACCGTTGACTTATATTAGGAGCTTGAAGACCATTTTGCAAACAGAGG
GGTTACGTCAATCTTTTTTGCGGGGCCTTGCGCCTAAGCTGGTGTCAAGC
GCACCGCTTGGGATGCTATCTTCCGTCATCTATGAGGGAATCTTGTTTTG
GAGTCGGAAAGACAGCAGCGAATGGAAAAGTTATGGTGCTAGCACCGAAA
CTGCCGAGAAGAAGAAGAAAACAACTGCGGGGGAGAAGGAGATGTAGCGA
CACAAAATTGGTTGGAAAAAGAGACAGTAACAAAGTTTTGGTTGCGGTGA
AGGAACGAAATACCCGAAATTCTGA

Coding sequence (CDS) from alignment at scaffold_4:704790..706564+

>mRNA_2071 ID=mRNA_2071|Name=jgi.p|Nanoce1779_2|578942|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_4:704790..706564+ (Nannochloropsis oceanica)
ATGACCCTTGACGTTTCCAACCTGGGACAGACGGAGTGGCAAGATCTGGA
CGTGAAGAAGCTATTGATCATCTCCTCTTTTGCCACTGTATTCGAAAACT
CGATATATTGGCCTATGTGGGCGATGAAGACTCGGCAGCAAGTGCAGACC
GGGGCCGTCACTCAGTCCCTGAGCATTCGCAGCATGGGAGGTATCAGGTC
ACTCTACAAGGGCTTCCTCTTCTATGCCGTCGCGAGCCTCCCAGCCTATT
TAGTATATATCAGCACATACACCTACGCTAAGAGTGCTCTGGGCTTGCAT
TATGATTCCAGTCCTGCCAACGGCTTTCCTGCCGAAACGGTTCCTGAGCC
GTCCTTCCAGCAAACTATGGCTCCCATGTTTGCCGGGTTTATTGCGGACG
CGGCCTGCTTGGCTCTTTACATACCAGTGGAGATTGTAGCGCAGCGCTTG
CAACTTCCCACGCGATATTCGGGCGTGCAGCAGGTTCTGACAGACATGTG
GCGAGAAGACGGTGTGCGCACTTTCTACCGAGGTTTCGGGGCGACTCTTG
TTACCTCTGGCATTGCGTCTGGCGTCTGGTGGCAGAGTTATGAGTCCTTT
AAATCCCTATTTACCGTCCTGGCTCGCGAGCACATCCCCCCATCCAAACC
AAACCCTACACCCGTACCTGAATCTGCGGTCTTGTCTCCTTTCTCGTCGA
CAGAGCGCATGCTTGAGCAAGTCGCTGACGTTTTGGCAACGATCCGCCAG
TCCCTTCCTCACATGGCCGCCGGCTTGTTCGCCGGGGGATTGAGTGCCCT
GGCGACAAATCCTTTTGATGTGGCCAAGACGAGGCTGCAGACCCAGCATG
TGAAGCCTGGACCGTTGACTTATATTAGGAGCTTGAAGACCATTTTGCAA
ACAGAGGGGTTACGTCAATCTTTTTTGCGGGGCCTTGCGCCTAAGCTGGT
GTCAAGCGCACCGCTTGGGATGCTATCTTCCGTCATCTATGAGGGAATCT
TGTTTTGGAGTCGGAAAGACAGCAGCGAATGGAAAAGTTATGGTGCTAGC
ACCGAAACTGCCGAGAAGAAGAAGAAAACAACTGCGGGGGAGAAGGAGAT
GTAGATGACCCTTGACGTTTCCAACCTGGGACAGACGGAGTGGCAAGATC
TGGACGTGAAGAAGCTATTGATCATCTCCTCTTTTGCCACTGTATTCGAA
AACTCGATATATTGGCCTATGTGGGCGATGAAGACTCGGCAGCAAGTGCA
GACCGGGGCCGTCACTCAGTCCCTGAGCATTCGCAGCATGGGAGGTATCA
GGTCACTCTACAAGGGCTTCCTCTTCTATGCCGTCGCGAGCCTCCCAGCC
TATTTAGTATATATCAGCACATACACCTACGCTAAGAGTGCTCTGGGCTT
GCATTATGATTCCAGTCCTGCCAACGGCTTTCCTGCCGAAACGGTTCCTG
AGCCGTCCTTCCAGCAAACTATGGCTCCCATGTTTGCCGGGTTTATTGCG
GACGCGGCCTGCTTGGCTCTTTACATACCAGTGGAGATTGTAGCGCAGCG
CTTGCAACTTCCCACGCGATATTCGGGCGTGCAGCAGGTTCTGACAGACA
TGTGGCGAGAAGACGGTGTGCGCACTTTCTACCGAGGTTTCGGGGCGACT
CTTGTTACCTCTGGCATTGCGTCTGGCGTCTGGTGGCAGAGTTATGAGTC
CTTTAAATCCCTATTTACCGTCCTGGCTCGCGAGCACATCCCCCCATCCA
AACCAAACCCTACACCCGTACCTGAATCTGCGGTCTTGTCTCCTTTCTCG
TCGACAGAGCGCATGCTTGAGCAAGTCGCTGACGTTTTGGCAACGATCCG
CCAGTCCCTTCCTCACATGGCCGCCGGCTTGTTCGCCGGGGGATTGAGTG
CCCTGGCGACAAATCCTTTTGATGTGGCCAAGACGAGGCTGCAGACCCAG
CATGTGAAGCCTGGACCGTTGACTTATATTAGGAGCTTGAAGACCATTTT
GCAAACAGAGGGGTTACGTCAATCTTTTTTGCGGGGCCTTGCGCCTAAGC
TGGTGTCAAGCGCACCGCTTGGGATGCTATCTTCCGTCATCTATGAGGGA
ATCTTGTTTTGGAGTCGGAAAGACAGCAGCGAATGGAAAAGTTATGGTGC
TAGCACCGAAACTGCCGAGAAGAAGAAGAAAACAACTGCGGGGGAGAAGG
AGATGTAGATGACCCTTGACGTTTCCAACCTGGGACAGACGGAGTGGCAA
GATCTGGACGTGAAGAAGCTATTGATCATCTCCTCTTTTGCCACTGTATT
CGAAAACTCGATATATTGGCCTATGTGGGCGATGAAGACTCGGCAGCAAG
TGCAGACCGGGGCCGTCACTCAGTCCCTGAGCATTCGCAGCATGGGAGGT
ATCAGGTCACTCTACAAGGGCTTCCTCTTCTATGCCGTCGCGAGCCTCCC
AGCCTATTTAGTATATATCAGCACATACACCTACGCTAAGAGTGCTCTGG
GCTTGCATTATGATTCCAGTCCTGCCAACGGCTTTCCTGCCGAAACGGTT
CCTGAGCCGTCCTTCCAGCAAACTATGGCTCCCATGTTTGCCGGGTTTAT
TGCGGACGCGGCCTGCTTGGCTCTTTACATACCAGTGGAGATTGTAGCGC
AGCGCTTGCAACTTCCCACGCGATATTCGGGCGTGCAGCAGGTTCTGACA
GACATGTGGCGAGAAGACGGTGTGCGCACTTTCTACCGAGGTTTCGGGGC
GACTCTTGTTACCTCTGGCATTGCGTCTGGCGTCTGGTGGCAGAGTTATG
AGTCCTTTAAATCCCTATTTACCGTCCTGGCTCGCGAGCACATCCCCCCA
TCCAAACCAAACCCTACACCCGTACCTGAATCTGCGGTCTTGTCTCCTTT
CTCGTCGACAGAGCGCATGCTTGAGCAAGTCGCTGACGTTTTGGCAACGA
TCCGCCAGTCCCTTCCTCACATGGCCGCCGGCTTGTTCGCCGGGGGATTG
AGTGCCCTGGCGACAAATCCTTTTGATGTGGCCAAGACGAGGCTGCAGAC
CCAGCATGTGAAGCCTGGACCGTTGACTTATATTAGGAGCTTGAAGACCA
TTTTGCAAACAGAGGGGTTACGTCAATCTTTTTTGCGGGGCCTTGCGCCT
AAGCTGGTGTCAAGCGCACCGCTTGGGATGCTATCTTCCGTCATCTATGA
GGGAATCTTGTTTTGGAGTCGGAAAGACAGCAGCGAATGGAAAAGTTATG
GTGCTAGCACCGAAACTGCCGAGAAGAAGAAGAAAACAACTGCGGGGGAG
AAGGAGATGTAG

Synonyms

Publications