jgi.p|Nanoce1779_2|576465, mRNA_180 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576465
Unique Name	mRNA_180
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3148
Alignment location	scaffold_3:454878..458025 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576551
Track	FilteredModels2
ProteinId	576465

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:454878..458025 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576465	gene_180	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576465	mRNA_180-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_180	CDS_180	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:454878..458025+
coding sequence from alignment at scaffold_3:454878..458025+

mRNA sequence

>mRNA_180 ID=mRNA_180|Name=jgi.p|Nanoce1779_2|576465|organism=Nannochloropsis oceanica|type=mRNA|length=3148bp
TTGATCATCCTTGCCACCCACCACACAGGTCAGTTCTTCGCCCGACCATA
AAAGGCGGGACGGGGGGGACCCGGCAACCACGCATTCTTGGCAGCATCAA
CAGCTTGTTTAGTTGGTGGTGCCATAGTGAGAGGGACGCGGCAAGATAAA
AATTTGCAGCGGGACACCGCTGTCGCGGTGGAAAGAGGAGGATTAGCAGC
ACCGATAGCAGTGGCCTCAATTTTGACTACCATCTTCTCATGGAAGAGGA
CGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGAAACACGCCGAA
GCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACCATGACGCCGAT
GCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCCGCAGACAGTCA
AGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGATGTGCGACAAC
GCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCGGCGGCCACGCC
CAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGCGTCGCCGTCAA
ATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTGGGCACTGATGA
AACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCCTCATCCTCTGG
ATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTACGTCTATTACCT
TCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCCGTTGCAAGATT
TGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCTTTGAATGGATC
ATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTCTCCCTGGGCCT
TCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCCTACGATCGATG
TCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTATGCCTGTCTGC
TTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGAATGACTTTAAG
AATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGCGGAGTACTGTC
ATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGATATTTTCGCGA
GTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCGGGGCACACCTC
TCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGCCCCCAATCTGA
GGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGCTAGCGGCGTCG
TTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTCGTAGCAATCTA
TGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGCGGCGAGTATCA
AACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGCCCCCGACGCCC
ACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCGCTTTCGGGTGT
GGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTTGTGTAGGGATA
GGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAAAGGGTGAAGGG
ACCTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAGCCACCAGCAGC
AATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGAGGGGGGATGCG
TGTGAATGAAGTAAGGGATGAAGGCAGAGACGGACTGTTGATGTATGTAA
GAGGGAATTTGAAAATTAGGATATGAAAATGAGAGAATTTATGTATACAG
AGGGGAAAATCATTTTGGACGGGCACAAATTAAAAAAAATTTAAGAGATA
GAGAAAGCGAGAGAGATGAAATGAGGGCACCGATGCCGACAGTTTCTTTG
GATGACAGAAGTAGAGATGTGTGTGCGTGTGTGCGTGTGTGCGAGTGTGT
CGGTTGGGTCTGTCAGTCTGTTTCTTTGGATACCCCTTTGCCCCGCATTG
TTTTTGGTGCTCCTAAGATTGAGATTTCCACAATATCGAGCTTCTACACA
ATGTCAACGACATTGACGACCACAACAATGACGACGACACACACATACAC
GCGTACACTGACACACATACATTCACACACGACACAAGAAAAGGGGGAAC
GATAAGTAGACGTGGGTGCACGTACAATGATTGATTCGGATGGATATAAT
TCGCATGTGTGGCATTCCCTTTTCCTTCGTCTTTCTCTTTCCCCTCGGCA
GACTTCTGAAGAAGTATACCTAAACGAATTCTGTTTTTCAGGGTTCTTTC
CTCATCTCTTATTATTTCATTCTTTTTCATCTGTTGTGTTTGGTAGATGG
AGATGGCGATGATTTGTTTCGTTAATTGGGTTGTCATCATGAAGGTCTGA
GTGTTCCTCCATCCTTCCCTGTTCCTTCATTTCTTTCTTCCACTTCCCGG
CCTCTTCAGCCCTTCGTTATCAGCTGCTATTCTAATATTCTACGTATGAG
TCTTCAACTTTTTCTGCATCTGTCTTTCGCGTATCAGTTCACTACGAAAG
CAATCGTTATTGTCTGTTTTATTTAAAGTAGCGGAGCACAACCGCAGTCG
CAGCAACAAGCGCGGAGCTAGGTCAGGCAGGGAGGGAAGGAGAAGGTCGG
AGAAGATAATTATTATTCCGGGCCTTATTATGCAAATGCACCTGTTATAC
ATATTTTCACTTTCCCATCCAATATGCGTGTCACGCTCTCTCTCTATATC
TATCCATCGATCTCCTTCACCTTTCTCGTCGTCGTCCTCCTTTCACTCCT
TGATTTTGTTTCCGTTCTTCGCCCTAAGCTTTTTGTTCTTCTCCGTCTGA
CCTGGTCTCTTCTTTCCCCATCAATCACTCCCAGAGTGTTACATTAAATT
GAATCAACATTACAGTTCGATTCGGTTGTTCACCCTCCATCTGCGCCTTT
TCCCTTCCTATCATTCTCCCTTCCCCTGTATATTTCTGTGTTACGGGGTC
CCCCCTCTACCACTTTCTTCGCAATCCACCTACTTACCTACACACACACA
CGCGTCCTATTCTTCTTCTTTCCCATCCTTATCTGAACAAAAGAAATTTA
TGCCTATCATTACTATCGATCTATGCATGATGCGGCTCTGTGCCAAGATG
TAAACCACAATCCCTCATCTCCCTCCCTCATTCCCTCGCCCCACCTCT

protein sequence of jgi.p|Nanoce1779_2|576465

>mRNA_180-protein ID=mRNA_180-protein|Name=jgi.p|Nanoce1779_2|576465|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MEEDEDGTSTPATSTEETRRSKRDLSPFPPSNYHDADASPARRLPPASTA
ADSQESELEAGLGAKQDVRQRGVPNGGVERSNSGGHAQYHPTSHHSPPGR
VAVKSEREMLALLSFEWALMKRGILPSKSPLFFLILWIFVEYVHLIAHNY
VYYLQGKLWGADGPPPPLQDLGLMLLADRLPESFEWIIGFATALLCGLMF
SLGLLRLTLTNVNWGGPTIDVKTSDGRVKTTLPMPVCLVMRRACQAMSVG
MTLRIITFLVTLIPNPAEYCHGSSWDPPAHVGEIFSRVRFTGSCGDLMFS
GHTSHGMVLMLVVCKFAPNLRAAKVLAVGSMTLLAASLLAFKAHYSSDVL
VAIYVNIMIWWLLPRDAASIKLADLQLDDHLPLPPTPTFLSVPPLSAAAS
LSGVGELNTPNSSTLSLCRDREAGGAGGGQEAGKGEGTSRRGRRREGEGQ
PPAAIVQQEEEAVRRLEGGCV*

mRNA from alignment at scaffold_3:454878..458025+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_180 ID=mRNA_180|Name=jgi.p|Nanoce1779_2|576465|organism=Nannochloropsis oceanica|type=mRNA|length=3148bp|location=Sequence derived from alignment at scaffold_3:454878..458025+ (Nannochloropsis oceanica)
TTGATCATCCTTGCCACCCACCACACAGGTCAGTTCTTCGCCCGACCATA
AAAGGCGGGACGGGGGGGACCCGGCAACCACGCATTCTTGGCAGCATCAA
CAGCTTGTTTAGTTGGTGGTGCCATAGTGAGAGGGACGCGGCAAGATAAA
AATTTGCAGCGGGACACCGCTGTCGCGGTGGAAAGAGGAGGATTAGCAGC
ACCGATAGCAGTGGCCTCAATTTTGACTACCATCTTCTCATGGAAGAGGA
CGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGAAACACGCCGAA
GCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACCATGACGCCGAT
GCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCCGCAGACAGTCA
AGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGATGTGCGACAAC
GCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCGGCGGCCACGCC
CAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGCGTCGCCGTCAA
ATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTGGGCACTGATGA
AACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCCTCATCCTCTGG
ATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTACGTCTATTACCT
TCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCCGTTGCAAGATT
TGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCTTTGAATGGATC
ATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTCTCCCTGGGCCT
TCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCCTACGATCGATG
TCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTATGCCTGTCTGC
TTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGAATGACTTTAAG
AATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGCGGAGTACTGTC
ATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGATATTTTCGCGA
GTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCGGGGCACACCTC
TCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGCCCCCAATCTGA
GGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGCTAGCGGCGTCG
TTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTCGTAGCAATCTA
TGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGCGGCGAGTATCA
AACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGCCCCCGACGCCC
ACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCGCTTTCGGGTGT
GGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTTGTGTAGGGATA
GGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAAAGGGTGAAGGG
ACCTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAGCCACCAGCAGC
AATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGAGGGGGGATGCG
TGTGAATGAAGTAAGGGATGAAGGCAGAGACGGACTGTTGATGTATGTAA
GAGGGAATTTGAAAATTAGGATATGAAAATGAGAGAATTTATGTATACAG
AGGGGAAAATCATTTTGGACGGGCACAAATTAAAAAAAATTTAAGAGATA
GAGAAAGCGAGAGAGATGAAATGAGGGCACCGATGCCGACAGTTTCTTTG
GATGACAGAAGTAGAGATGTGTGTGCGTGTGTGCGTGTGTGCGAGTGTGT
CGGTTGGGTCTGTCAGTCTGTTTCTTTGGATACCCCTTTGCCCCGCATTG
TTTTTGGTGCTCCTAAGATTGAGATTTCCACAATATCGAGCTTCTACACA
ATGTCAACGACATTGACGACCACAACAATGACGACGACACACACATACAC
GCGTACACTGACACACATACATTCACACACGACACAAGAAAAGGGGGAAC
GATAAGTAGACGTGGGTGCACGTACAATGATTGATTCGGATGGATATAAT
TCGCATGTGTGGCATTCCCTTTTCCTTCGTCTTTCTCTTTCCCCTCGGCA
GACTTCTGAAGAAGTATACCTAAACGAATTCTGTTTTTCAGGGTTCTTTC
CTCATCTCTTATTATTTCATTCTTTTTCATCTGTTGTGTTTGGTAGATGG
AGATGGCGATGATTTGTTTCGTTAATTGGGTTGTCATCATGAAGGTCTGA
GTGTTCCTCCATCCTTCCCTGTTCCTTCATTTCTTTCTTCCACTTCCCGG
CCTCTTCAGCCCTTCGTTATCAGCTGCTATTCTAATATTCTACGTATGAG
TCTTCAACTTTTTCTGCATCTGTCTTTCGCGTATCAGTTCACTACGAAAG
CAATCGTTATTGTCTGTTTTATTTAAAGTAGCGGAGCACAACCGCAGTCG
CAGCAACAAGCGCGGAGCTAGGTCAGGCAGGGAGGGAAGGAGAAGGTCGG
AGAAGATAATTATTATTCCGGGCCTTATTATGCAAATGCACCTGTTATAC
ATATTTTCACTTTCCCATCCAATATGCGTGTCACGCTCTCTCTCTATATC
TATCCATCGATCTCCTTCACCTTTCTCGTCGTCGTCCTCCTTTCACTCCT
TGATTTTGTTTCCGTTCTTCGCCCTAAGCTTTTTGTTCTTCTCCGTCTGA
CCTGGTCTCTTCTTTCCCCATCAATCACTCCCAGAGTGTTACATTAAATT
GAATCAACATTACAGTTCGATTCGGTTGTTCACCCTCCATCTGCGCCTTT
TCCCTTCCTATCATTCTCCCTTCCCCTGTATATTTCTGTGTTACGGGGTC
CCCCCTCTACCACTTTCTTCGCAATCCACCTACTTACCTACACACACACA
CGCGTCCTATTCTTCTTCTTTCCCATCCTTATCTGAACAAAAGAAATTTA
TGCCTATCATTACTATCGATCTATGCATGATGCGGCTCTGTGCCAAGATG
TAAACCACAATCCCTCATCTCCCTCCCTCATTCCCTCGCCCCACCTCT

Coding sequence (CDS) from alignment at scaffold_3:454878..458025+

>mRNA_180 ID=mRNA_180|Name=jgi.p|Nanoce1779_2|576465|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_3:454878..458025+ (Nannochloropsis oceanica)
ATGGAAGAGGACGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGA
AACACGCCGAAGCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACC
ATGACGCCGATGCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCC
GCAGACAGTCAAGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGA
TGTGCGACAACGCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCG
GCGGCCACGCCCAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGC
GTCGCCGTCAAATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTG
GGCACTGATGAAACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCC
TCATCCTCTGGATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTAC
GTCTATTACCTTCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCC
GTTGCAAGATTTGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCT
TTGAATGGATCATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTC
TCCCTGGGCCTTCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCC
TACGATCGATGTCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTA
TGCCTGTCTGCTTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGA
ATGACTTTAAGAATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGC
GGAGTACTGTCATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGA
TATTTTCGCGAGTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCG
GGGCACACCTCTCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGC
CCCCAATCTGAGGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGC
TAGCGGCGTCGTTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTC
GTAGCAATCTATGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGC
GGCGAGTATCAAACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGC
CCCCGACGCCCACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCG
CTTTCGGGTGTGGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTT
GTGTAGGGATAGGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAA
AGGGTGAAGGGACCTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAG
CCACCAGCAGCAATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGA
GGGGGGATGCGTGTGA

Synonyms

Publications