jgi.p|Nanoce1779_2|572762, mRNA_1577 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572762
Unique Name	mRNA_1577
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1148
Alignment location	scaffold_1:987913..989060 -

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Properties


Property Name	Value
TranscriptId	572848
Track	FilteredModels2
ProteinId	572762

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:987913..989060 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572762	gene_1577	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572762	mRNA_1577-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1577	CDS_1577	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:987913..989060-
coding sequence from alignment at scaffold_1:987913..989060-

mRNA sequence

>mRNA_1577 ID=mRNA_1577|Name=jgi.p|Nanoce1779_2|572762|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
AGGCGGCACGACGACCAGGAACAGCTCGAGTCATCTCTGCCATTGCCATG
GTAGACGCTCCTCCTCCTCCTCCTCCATCCTCCCCCGTCAAGTCCAGTTT
GAGCGGCTTTGGTCGCACACCGCTACCATCGAATGCACCAAGACTTCCAC
TGTTGATGCTGTTAGGGGTGGTGATGCGTGCACCCGTTCCAGCTCCCAAG
GCTGGTGCGAGGGAATTGCCGCCTGTGGGATCAGTACCTGCTAGGTGTTG
CTTGGAGCCACGTCGACGAACCTTATTCCCACGACTGATGTTACCACCAT
CGGAATGCTGTTGAAGTTGGTTTTGCAGGACCGCAAGATCGCTACGGGAG
CCTCCTCTCCTCTTGGCAGCAGCGGCGGCCTTGGCGCTCCCTCCTGAAAT
AAGGTGGCTGGTACGTTGAATGACGCCCGTCATATTTTTCATGGCATTGG
TCGTGGCGGTGGTCAAGCGTGAAAGCGTGCCAAGCTCGGGAACTTCTTCC
ACGCATTGGGGCGGGATGATGAGGCGTCGATGCGGGCAGTTCCGAAGGGC
CTCCCACCAGTTTGGGTTCGTCTCCTCCTTCTCGCGATCGACCATGAAGG
AGAAAATCTCCCAAAATAACCATACCACCGAGGCGATCAACACGGCCACA
AGAACGAGGAGGACCTCGGCCTTGACCAGAAAGGGCGAGAGGACGTTCAG
TTGGTCGTCCATTGTCGTGGTAGGACGCTCCGAGAGGTGGTCCTGCTTGA
GGGGATGGTTATTTGCTCGTTTGCTAAGCTGAGAACGTAGACGACACAGA
GGGCCCTGCTTTTTCCCCTATCCTCCCCGGCATCGTAAGGGCCCCTTATG
CAGTGGTATTAATATCGAAGAGAGCCTGTATGTTCGCGACGTGTGGCGAA
AAGGTTGAGTGAGAAGGAGACTTGGGCAGCCCATAGCATCGGTTGCTTCA
GAAGTCGCCCTTTCCCAAGGCTCCTATGGGTGGTAGATGCTACTGGCTCC
ACGCCAGCTCTACAAAAACTGTGTAGAGTACCCGCAACACCTGTCAGTGA
CGCTGCAGCTCGTAAAAGTCATGGTCGTTCAAGTAATGTGCGAAGGGAGG
ACTTGGTTGGGGAGAGTTTCCTGGTCGGCGCGCGAAAACAATAGTATA

protein sequence of jgi.p|Nanoce1779_2|572762

>mRNA_1577-protein ID=mRNA_1577-protein|Name=jgi.p|Nanoce1779_2|572762|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MTPVIFFMALVVAVVKRESVPSSGTSSTHWGGMMRRRCGQFRRASHQFGF
VSSFSRSTMKEKISQNNHTTEAINTATRTRRTSALTRKGERTFSWSSIVV
VGRSERWSCLRGWLFARLL

mRNA from alignment at scaffold_1:987913..989060-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1577 ID=mRNA_1577|Name=jgi.p|Nanoce1779_2|572762|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at scaffold_1:987913..989060- (Nannochloropsis oceanica)
AGGCGGCACGACGACCAGGAACAGCTCGAGTCATCTCTGCCATTGCCATG
GTAGACGCTCCTCCTCCTCCTCCTCCATCCTCCCCCGTCAAGTCCAGTTT
GAGCGGCTTTGGTCGCACACCGCTACCATCGAATGCACCAAGACTTCCAC
TGTTGATGCTGTTAGGGGTGGTGATGCGTGCACCCGTTCCAGCTCCCAAG
GCTGGTGCGAGGGAATTGCCGCCTGTGGGATCAGTACCTGCTAGGTGTTG
CTTGGAGCCACGTCGACGAACCTTATTCCCACGACTGATGTTACCACCAT
CGGAATGCTGTTGAAGTTGGTTTTGCAGGACCGCAAGATCGCTACGGGAG
CCTCCTCTCCTCTTGGCAGCAGCGGCGGCCTTGGCGCTCCCTCCTGAAAT
AAGGTGGCTGGTACGTTGAATGACGCCCGTCATATTTTTCATGGCATTGG
TCGTGGCGGTGGTCAAGCGTGAAAGCGTGCCAAGCTCGGGAACTTCTTCC
ACGCATTGGGGCGGGATGATGAGGCGTCGATGCGGGCAGTTCCGAAGGGC
CTCCCACCAGTTTGGGTTCGTCTCCTCCTTCTCGCGATCGACCATGAAGG
AGAAAATCTCCCAAAATAACCATACCACCGAGGCGATCAACACGGCCACA
AGAACGAGGAGGACCTCGGCCTTGACCAGAAAGGGCGAGAGGACGTTCAG
TTGGTCGTCCATTGTCGTGGTAGGACGCTCCGAGAGGTGGTCCTGCTTGA
GGGGATGGTTATTTGCTCGTTTGCTAAGCTGAGAACGTAGACGACACAGA
GGGCCCTGCTTTTTCCCCTATCCTCCCCGGCATCGTAAGGGCCCCTTATG
CAGTGGTATTAATATCGAAGAGAGCCTGTATGTTCGCGACGTGTGGCGAA
AAGGTTGAGTGAGAAGGAGACTTGGGCAGCCCATAGCATCGGTTGCTTCA
GAAGTCGCCCTTTCCCAAGGCTCCTATGGGTGGTAGATGCTACTGGCTCC
ACGCCAGCTCTACAAAAACTGTGTAGAGTACCCGCAACACCTGTCAGTGA
CGCTGCAGCTCGTAAAAGTCATGGTCGTTCAAGTAATGTGCGAAGGGAGG
ACTTGGTTGGGGAGAGTTTCCTGGTCGGCGCGCGAAAACAATAGTATA

Coding sequence (CDS) from alignment at scaffold_1:987913..989060-

>mRNA_1577 ID=mRNA_1577|Name=jgi.p|Nanoce1779_2|572762|organism=Nannochloropsis oceanica|type=CDS|length=358bp|location=Sequence derived from alignment at scaffold_1:987913..989060- (Nannochloropsis oceanica)
ATGACGCCCGTCATATTTTTCATGGCATTGGTCGTGGCGGTGGTCAAGCG
TGAAAGCGTGCCAAGCTCGGGAACTTCTTCCACGCATTGGGGCGGGATGA
TGAGGCGTCGATGCGGGCAGTTCCGAAGGGCCTCCCACCAGTTTGGGTTC
GTCTCCTCCTTCTCGCGATCGACCATGAAGGAGAAAATCTCCCAAAATAA
CCATACCACCGAGGCGATCAACACGGCCACAAGAACGAGGAGGACCTCGG
CCTTGACCAGAAAGGGCGAGAGGACGTTCAGTTGGTCGTCCATTGTCGTG
GTAGGACGCTCCGAGAGGTGGTCCTGCTTGAGGGGATGGTTATTTGCTCG
TTTGCTAA

Synonyms

Publications