jgi.p|Nanoce1779_2|4542, mRNA_1352 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|4542
Unique NamemRNA_1352
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length817
Alignment locationscaffold_1:365187..367048 +

Link to JBrowse

Properties
Property NameValue
TranscriptId4628
TrackFilteredModels2
ProteinId4542
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:365187..367048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|4542gene_1352Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|4542mRNA_1352-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1352CDS_1352Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1352 ID=mRNA_1352|Name=jgi.p|Nanoce1779_2|4542|organism=Nannochloropsis oceanica|type=mRNA|length=817bp
TACCTTGAAATGTTGCTTTGGCCAGACCGACGCTTTGGTTCAAATGTCAT
GATTGGAAATTGAGGCCGCAGGGCGGCTGGTCCCCTCGAGCTTCGTTATC
GGTGTTTTGTTGGGGGGGGAAAGAGGTCCAGTGAAGTCGACGTCCTAGCC
TCTCCGTCGAAGGACGGACTCCGGAAGGTAGTGGACGACACGACGTCGAT
GACATTGTGGTACTTCTCCGGGATTGGTCCTGGTAACCCTGGCCTTTCCC
TCACCTGTCTTGGCTACCTTTGTTTCCGACATTTTCTCCATCACCCGCAT
CGACGCCTCTCCACTAACCTTTCCTCCACCCGGCCTTTCCATCTCCTATA
CTTTACTTACCATTGGTTCGCCTTCCCCGCGCTTCACTTCCATGACACAT
ACGACTCCTTCTCTCCCTTCCTTGCTCCCGACCCCATCGCCATAGTGTCG
CCGACTTTTCCGCTACCTGGTATCTCAGCCGACGACTTGCTCATTACCAT
CACCTCGCTTTCCATACGCTTCTTGTTGACACAGGGCAACGACGACTCTT
CCTCGTCCTCTACTCCCAACGTCCCCAGCATCTTTCTCTTTACCATGGTT
CCTGAGATGAATGCATGACAGAACTGAGCATCTCAATCATGAACCTACAC
TCAGAGATCTGCGCAAAAAAGCAATGACACCGATGCATTGATTCTCGAAC
GCAAATCAAAGAGACGCACACAAACGCACAAGAAACCAGCCCGAAAGAAA
CAAAATCATGTGACCATACAACCATTCTCTGGGCAAGACGCAGTCCACAA
ATAACAAAACATACTCC
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protein sequence of jgi.p|Nanoce1779_2|4542

>mRNA_1352-protein ID=mRNA_1352-protein|Name=jgi.p|Nanoce1779_2|4542|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MTLWYFSGIGPGNPGLSLTCLGYLCFRHFLHHPHRRLSTNLSSTRPFHLL
YFTYHWFAFPALHFHDTYDSFSPFLAPDPIAIVSPTFPLPGISADDLLIT
ITSLSIRFLLTQGNDDSSSSSTPNVPSIFLFTMVPEMNA*
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mRNA from alignment at scaffold_1:365187..367048+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1352 ID=mRNA_1352|Name=jgi.p|Nanoce1779_2|4542|organism=Nannochloropsis oceanica|type=mRNA|length=1862bp|location=Sequence derived from alignment at scaffold_1:365187..367048+ (Nannochloropsis oceanica)
TACCTTGAAATGTTGCTTTGGCCAGACCGACGCTTTGGTTCAAATGTCAT
GATTGGAAATTGAGGCCGCAGGGCGGCTGGTCCCCTCGAGCTTCGTTATC
GGTGTTTTGTTGGGGGGGGAAAGAGGTCCAGTGAAGTCGACGTCCTAGCC
TCTCCGTCGAAGGACGGACTCCGGAAGGTAGTGGACGACACGACGTCGAT
GACATTGTGGTACTTCTCCGGGATTGGTCCTGGTAACGTTTCGGGCGAAA
AGGCCAGGCTCGTCTCCAAGGCACCAGAGGGTTTGAAAAAGATTGGTGGT
GCGGCCACGTGGGTTTCCATTGACGAGCGACCTAGCAACGCCATGGGTTC
GGTGTGTGTGCTGGTAAGTGCGGATGCTCGACGTCTGAAGACGTCTCACA
ATGAAGTGGCCCTGGGCGTGGATGTGGTGGGTTGCTTTGTGACCGGGGAA
CCCAGAATATCAGTATCAAATCCACGCGGTTGAATACTTTGGCCTTGGCG
GGGGTGCAGGCGGGGAAGGAGTTGATAGGAACTCCGGCCTGTAAGGTGGA
AGTGTCCAAACCCATCGGGGGACAAGTTTCCAGAAATTTGATTTGGGAGA
AAGACACGATGGTCATGCCGATGCCTCCGCGATTTTTGGCCAAGTTGAGT
GACTTGCGGGGTTTTGAAGATGGAAAATACTTTCCCGCCGTTTACGGTGT
GGTAGGAAGCGTTGAAATGTACGATCTCTTCACTCAGTATCTCAGCCTTC
TGCGTCCGTACTACGATAGGGATATCCCCGACCGCTGGATTCCTCAGGAT
GAACGCCGATCACTTTCCATACATTTCAACGCTTCCTACCACACCGTAAA
CGGCGGGAAAGTATTTTCCATCTTCAAAACCCCGCAAGTCACTCAACTTG
GCCAAAAATCGCGGAGGCATCGGCATGACCATCGTGTCTTTCTCCCAAAT
CAAATTTCTGGAAACTTGTCCCCCGATGGGTTTGGACACTTCCACCTTAC
AGGCCGGAGTTCCTATCAACTCCTTCCCCGCCTGCACCCCCGCCAAGGCC
AAAGTATTCAACCGCGTGGATTTGATACTGATATTCTGGGTTCCCCGGTC
ACAAAGCAACCCACCACATCCACGCCCAGGGCCACTTCATTGTGAGACGT
CTTCAGACGTCGAGCATCCGCACTTACCAGCACACACACCGAACCCATGG
CGTTGCTAGGTCGCTCGTCAATGGAAACCCACGTGGCCGCACCACCAATC
TTTTTCAAACCCTCTGGTGCCTTGGAGACGAGCCTGGCCTTTCCCTCACC
TGTCTTGGCTACCTTTGTTTCCGACATTTTCTCCATCACCCGCATCGACG
CCTCTCCACTAACCTTTCCTCCACCCGGCCTTTCCATCTCCTATACTTTA
CTTACCATTGGTTCGCCTTCCCCGCGCTTCACTTCCATGACACATACGAC
TCCTTCTCTCCCTTCCTTGCTCCCGACCCCATCGCCATAGTGTCGCCGAC
TTTTCCGCTACCTGGTATCTCAGCCGACGACTTGCTCATTACCATCACCT
CGCTTTCCATACGCTTCTTGTTGACACAGGGCAACGACGACTCTTCCTCG
TCCTCTACTCCCAACGTCCCCAGCATCTTTCTCTTTACCATGGTTCCTGA
GATGAATGCATGACAGAACTGAGCATCTCAATCATGAACCTACACTCAGA
GATCTGCGCAAAAAAGCAATGACACCGATGCATTGATTCTCGAACGCAAA
TCAAAGAGACGCACACAAACGCACAAGAAACCAGCCCGAAAGAAACAAAA
TCATGTGACCATACAACCATTCTCTGGGCAAGACGCAGTCCACAAATAAC
AAAACATACTCC
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Coding sequence (CDS) from alignment at scaffold_1:365187..367048+

>mRNA_1352 ID=mRNA_1352|Name=jgi.p|Nanoce1779_2|4542|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_1:365187..367048+ (Nannochloropsis oceanica)
ATGACATTGTGGTACTTCTCCGGGATTGGTCCTGGTAACCCTGGCCTTTC
CCTCACCTGTCTTGGCTACCTTTGTTTCCGACATTTTCTCCATCACCCGC
ATCGACGCCTCTCCACTAACCTTTCCTCCACCCGGCCTTTCCATCTCCTA
TACTTTACTTACCATTGGTTCGCCTTCCCCGCGCTTCACTTCCATGACAC
ATACGACTCCTTCTCTCCCTTCCTTGCTCCCGACCCCATCGCCATAGTGT
CGCCGACTTTTCCGCTACCTGGTATCTCAGCCGACGACTTGCTCATTACC
ATCACCTCGCTTTCCATACGCTTCTTGTTGACACAGGGCAACGACGACTC
TTCCTCGTCCTCTACTCCCAACGTCCCCAGCATCTTTCTCTTTACCATGG
TTCCTGAGATGAATGCATGAATGACATTGTGGTACTTCTCCGGGATTGGT
CCTGGTAACCCTGGCCTTTCCCTCACCTGTCTTGGCTACCTTTGTTTCCG
ACATTTTCTCCATCACCCGCATCGACGCCTCTCCACTAACCTTTCCTCCA
CCCGGCCTTTCCATCTCCTATACTTTACTTACCATTGGTTCGCCTTCCCC
GCGCTTCACTTCCATGACACATACGACTCCTTCTCTCCCTTCCTTGCTCC
CGACCCCATCGCCATAGTGTCGCCGACTTTTCCGCTACCTGGTATCTCAG
CCGACGACTTGCTCATTACCATCACCTCGCTTTCCATACGCTTCTTGTTG
ACACAGGGCAACGACGACTCTTCCTCGTCCTCTACTCCCAACGTCCCCAG
CATCTTTCTCTTTACCATGGTTCCTGAGATGAATGCATGA
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Synonyms
Publications