NO30G00160.1, NO30G00160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00160.1
Unique NameNO30G00160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr30:73736..74822 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:73736..74822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00160.1 vs.
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana]; EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 2.100e-15
Identity = 57/151 (37.75%), Postives = 80/151 (52.98%), Query Frame = 0 
Query:   27 IVQTYAKPLVVKKGRIVTVTQSFVV-ENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKH-NKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 176
            I+Q  A PL  + G+ V VT   VV ++  GR  A +  P           +D  F     P  N   +   NKTSK  K   D+G++   +KI PNTWRPK +  I   DEGD  ++ LP DG  L ++YKIT  +R+G+ +PSGT++ L
Sbjct:  188 IIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPT----------ADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIV--DEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326
The following BLAST results are available for this feature:
BLAST of NO30G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22729.12.100e-1537.75hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00160NO30G00160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00160.1NO30G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00160.1.cds1NO30G00160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00160.1.cds2NO30G00160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00160.1.cds3NO30G00160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00160.1.cds4NO30G00160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00160.1 ID=NO30G00160.1|Name=NO30G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
ATGAAGTTGACTGTCTCCTCCGCCCTCCTGGCCGGCGTCGCCCTCTTCTC
CACCATGTCCGCTGTCAGCGCCGACGGCATTGTCCAAACCTACGCCAAGC
CCCTGGTGGTGAAGAAGGGTAGGATCGTGACGGTCACCCAGAGCTTTGTG
GTCGAGAACTTTAACGGCCGCCGTCTTGCTACTCAGGACCCTCCTATCCA
GGCTGGGCTCTCGACTGCCGGGAATTTTTCTGATTGGAACTTCGACAGCG
ACTTTACACCCCTCTCCAATGCTGACAAAATAAAACACAACAAGACGAGC
AAGGCGGACAAGCACGCGAATGACCTCGGGGTCACCATCAAGTCGGCCAA
GATCTTCCCCAATACGTGGAGGCCTAAGGAGTCTGCGAACATTACCTCGA
CCGACGAAGGCGACGTCGCCATCTTCGAGCTCCCACAGGACGGCCTGACA
TTGAACAGGGAGTACAAGATCACCTACAAGGTGCGCGTTGGGAGGGGCAT
CCCCTCTGGTACCGTCCTCGAGCTTCCGTTTAACTTCAACGGCCCCGACA
TGGGTTTCCCAGATATCTTGGAGGTGCTTGTCAGGTAA
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protein sequence of NO30G00160.1

>NO30G00160.1-protein ID=NO30G00160.1-protein|Name=NO30G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MKLTVSSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFV
VENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTS
KADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLT
LNREYKITYKVRVGRGIPSGTVLELPFNFNGPDMGFPDILEVLVR*
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mRNA from alignment at chr30:73736..74822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00160.1 ID=NO30G00160.1|Name=NO30G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp|location=Sequence derived from alignment at chr30:73736..74822+ (Nannochloropsis oceanica)
ATGAAGTTGACTGTCTCCTCCGCCCTCCTGGCCGGCGTCGCCCTCTTCTC
CACCATGGTAAGTTTTGACACATCTACACAAGCATCCAATTCCAATTCCA
GTCCCTGCCCCATAAATCGACGTCGCGTTCATGCTATACAATACCTCCCC
CCCTCCTCTCTTTCTTGCTCTATCCTTCCTCCCTTATCTTACAGTCCGCT
GTCAGCGCCGACGGCATTGTCCAAACCTACGCCAAGCCCCTGGTGGTGAA
GAAGGGTAGGATCGTGACGGTCACCCAGAGCTTTGTGGTCGAGAACTTTA
ACGGCCGCCGTCTTGCTACTCAGGACCCTCCTATCCAGGCTGGGGTACGT
TGAAAGAAGAAGGTAGAGGAAGGAGAGGAAGGGAGAGAGGGCTTGCCCGA
GCAGATTCGGTGCCGGGCCGGTTGGCATGCTCACAAACGACTCGACGCGT
TTTTCTTTCTCGTCGCCCTTACAAATATAGGTGAATCTCACTCCTTCTTT
CTTTCCTTCCCTTCCTTTCCCTCCCAACACTCCCTGTCTCCATCCACCAA
CCTCTCCAAAGCTCTCGACTGCCGGGAATTTTTCTGATTGGAACTTCGAC
AGCGACTTTACACCCCTCTCCAATGCTGACAAAATAAAACACAACAAGAC
GAGCAAGGCGGACAAGCACGCGAATGACCTCGGGGTCACCATCAAGTCGG
CCAAGATCTTCCCCAATACGTGGAGGCCTAAGTGAGTAAGACAGGCGGGA
GGAGAGGGAAGAAGGAGGGGGGGAAGGGAGGTATATTAATTGGAATCTCT
CCTTGTTCAGCCCTACATCGAATCTTAATTCCTCCTCCCCTCTCTTTCTC
TCCTCTATTTGACTCGTCCCTAACAGGGAGTCTGCGAACATTACCTCGAC
CGACGAAGGCGACGTCGCCATCTTCGAGCTCCCACAGGACGGCCTGACAT
TGAACAGGGAGTACAAGATCACCTACAAGGTGCGCGTTGGGAGGGGCATC
CCCTCTGGTACCGTCCTCGAGCTTCCGTTTAACTTCAACGGCCCCGACAT
GGGTTTCCCAGATATCTTGGAGGTGCTTGTCAGGTAA
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Coding sequence (CDS) from alignment at chr30:73736..74822+

>NO30G00160.1 ID=NO30G00160.1|Name=NO30G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at chr30:73736..74822+ (Nannochloropsis oceanica)
ATGAAGTTGACTGTCTCCTCCGCCCTCCTGGCCGGCGTCGCCCTCTTCTC
CACCATGTCCGCTGTCAGCGCCGACGGCATTGTCCAAACCTACGCCAAGC
CCCTGGTGGTGAAGAAGGGTAGGATCGTGACGGTCACCCAGAGCTTTGTG
GTCGAGAACTTTAACGGCCGCCGTCTTGCTACTCAGGACCCTCCTATCCA
GGCTGGGCTCTCGACTGCCGGGAATTTTTCTGATTGGAACTTCGACAGCG
ACTTTACACCCCTCTCCAATGCTGACAAAATAAAACACAACAAGACGAGC
AAGGCGGACAAGCACGCGAATGACCTCGGGGTCACCATCAAGTCGGCCAA
GATCTTCCCCAATACGTGGAGGCCTAAGGAGTCTGCGAACATTACCTCGA
CCGACGAAGGCGACGTCGCCATCTTCGAGCTCCCACAGGACGGCCTGACA
TTGAACAGGGAGTACAAGATCACCTACAAGGTGCGCGTTGGGAGGGGCAT
CCCCTCTGGTACCGTCCTCGAGCTTCCGTTTAACTTCAACGGCCCCGACA
TGGGTTTCCCAGATATCTTGGAGGTGCTTGTCAGGTAA
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Synonyms
Publications