NO26G01720.1, NO26G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01720.1
Unique NameNO26G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1428
Alignment locationchr26:571822..574660 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:571822..574660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G01720.1 vs.
Match: EWM29860.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 211.1 bits (536), Expect = 3.400e-51
Identity = 108/175 (61.71%), Postives = 133/175 (76.00%), Query Frame = 0 
Query:   34 MAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQSENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNVWAIGDGKGL 209
            M+  D+IG DVETGG+FDPL FSKD   L K+R VELKHGR+AML  LG  +Q+   HLPD VFSNPRPL AL Q+ +ERPLA++Q++ AIT IE+ +GKQ    APG L +FG  FKPE E E AA+QLKELKNGRLAM+A +G  VQEL+TGQG  EQ++SG++   GDG+GL
Sbjct:    1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSY-THLPDDVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQDPELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFGDGQGL 174
The following BLAST results are available for this feature:
BLAST of NO26G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29860.13.400e-5161.71light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01720NO26G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01720.1NO26G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01720.1.cds1NO26G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01720.1.cds2NO26G01720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01720.1.cds3NO26G01720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01720.1.cds4NO26G01720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01720.1.cds5NO26G01720.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01720.1.cds6NO26G01720.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01720.1.cds7NO26G01720.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01720.1 ID=NO26G01720.1|Name=NO26G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
CGTTGATGTTGCGGGCCGAATCCTCTCCGCCTCTTTGGCCCCTTTCCTTC
TCCGATGCCCCCCCATGACTACGCGCCCATCACCACGCCTGTTGTCTTTC
TCACTGACCTATATTCCTGACAGCCGCCGCGTGCTGCTGGTGCTGCTGAC
GCGGCTGGTGCTGCAGGTGGTGCTCCTGCGACTGGCTTTGGCGTGAGCGA
GACGCTTTTCGACCTGGTCGTCGTGTTGCTCATGGGGCTGGGCTCATTGA
AAAACGCGCTTTGCGTGGTGCATTGAGCATTTCTTTAAGGCACATCCTCA
GCCACACACGTAGAGACACTTGTGCGAAGCAGAGCACGGCGCTGACAAGC
AGCCGGGGGGAAAAAAGCTTTACAAAGCTGTCCTCTCAATTCCTCTCATC
CCCGATCCGTGATCTCACGCATGCCTTCTTTTGTCCCTTCCTCTACCTTT
GCGCACAGCTTCCCCTCCCATTCTATTCTCACTTAAAATGAAGTTTGCTG
CTTTCGCCTGCCTGGCCTCTTTGATGGGTGCCTCCGCCTTTGTCGCTCCT
GCGCCCAAGCAGATGCGCAGCCGCGGCATGGCCCGTATGGCAGTTGATGA
CTTGATCGGCGCGGACGTGGAGACGGGCGGCATTTTCGACCCCCTCAACT
TCAGCAAGGATGCCGACAAGCTCGACAAATTCCGCGCCGTTGAGCTCAAG
CACGGCCGCATTGCCATGCTCGGTGTGCTGGGCATCTGGATTCAGGCCGC
GGGCCTCCACCTCCCTGACCCCGTTTTTTCCAACCCCCGCCCCCTCGCTG
CCCTGGTCCAGGTATCGACCGAGCGCCCTCTGGCCCTTGTCCAGCTCTTG
GCTGCCATCACCTGGATCGAGCTCGTGGCCGGGAAGCAGAGCGAGAACCA
GGCTCCGGGGGATCTCGCGAAATTCGGCAACCAGTTCAAGCCCGAGGATG
AGGAGGAGTACGCTGCCCTGCAGTTGAAGGAGCTCAAGAATGGCCGCCTG
GCCATGATTGCAAGCATGGGCCTTCTGGTCCAGGAGCTTGTCACGGGCCA
GGGCATTTGGGAGCAGCTGTCTTCCGGTAACGTCTGGGCTATCGGCGACG
GCAAGGGCCTCCTCTAAACGGTCGCTTGTTCTTTCGCCCTCAGTGTCCCT
CCCCCTCTCCTTCGTAAAGGCTGAGGAGGAGAGAGGAAAAGGGAGGGGAA
GAAGTGATTGCCTTGGGTGTGTTTTGTGGGTTGGAAGCGGGGGAGCGAGG
AAGGAGAGAGGGAGGGATGGCGTGCTTTTACTCTCTGCGGAGAGGATGGG
TGGCGCGCATCCTTCCAGATCCTAGTTTGGAGGAGGGAGGACAATAGAAA
GAAAAAAAGAAGAAAAGAAAATGACGTTCATAAGACACACATCATGTGTT
GAACTACTTTTCTTCTGTGTGTGATTTG
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protein sequence of NO26G01720.1

>NO26G01720.1-protein ID=NO26G01720.1-protein|Name=NO26G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MKFAAFACLASLMGASAFVAPAPKQMRSRGMARMAVDDLIGADVETGGIF
DPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNP
RPLAALVQVSTERPLALVQLLAAITWIELVAGKQSENQAPGDLAKFGNQF
KPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNVW
AIGDGKGLL*
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mRNA from alignment at chr26:571822..574660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01720.1 ID=NO26G01720.1|Name=NO26G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2839bp|location=Sequence derived from alignment at chr26:571822..574660+ (Nannochloropsis oceanica)
CGTTGATGTTGCGGGCCGAATCCTCTCCGCCTCTTTGGCCCCTTTCCTTC
TCCGATGCCCCCCCATGACTACGCGCCCATCACCACGCCTGTTGTCTTTC
TCACTGACCTATATTCCTGACAGCCGCCGCGTGCTGCTGGTGCTGCTGAC
GCGGCTGGTGCTGCAGGTGGTGCTCCTGCGACTGGCTTTGGCGTGAGCGA
GACGCTTTTCGACCTGGTCGTCGTGTTGCTCATGGGGCTGGGCTCATTGA
AAAACGCGCTTTGCGTGGTGCATTGAGCATTTCTTTAAGGCACATCCTCA
GCCACACACGTAGAGACACTTGTGCGAAGCAGAGCACGGCGCTGACAAGC
AGCCGGGGGGAAAAAAGCTTTACAAAGCTGTCCTCTCAATTCCTCTCATC
CCCGATCCGTGATCTCACGCATGCCTTCTTTTGTCCCTTCCTCTACCTTT
GCGCACAGCTTCCCCTCCCATTCTATTCTCACTTAAAATGAAGTTTGCTG
CTTTCGCCTGCCTGGCCTCTTTGATGGGTGCCTCCGCCTTTGTCGCTCCT
GCGCCCAAGCAGATGCGCAGCCGCGGCATGGCCCGTATGGCAGTTGATGA
CTTGATCGGTAGGGAAGAGGGAGGGGGAAAGAAAGAGAGGGAAAGAAGGA
CGGAGGTAGAGGGATGATTGGGAAGGGAAGGAGAGGGGGGAAGGTAAAAA
GGGGAGGGAGAGGGAAGGAGAGATATAGGGGAAAAAAGAGTGAGCATCTG
AGGCAGCAAATGGATGACTTGATCGGTAGGGAGGTGGGTGAAGAGTGAGA
GAGGGAGAAAGGAAGAGAGGGAGATGATGGAAAAGGAGGCGGTGAGAGAG
AGCTGCATGGACGATTACTCAATCTCTTTGGCCTTGCTTATCCTGCTGCT
GCTGCTCCTACTTCTACTGGTCCACTGTCACCACGCACCACTCACTGTAT
TCCTCGTTTTACACCTCGACCACTGGGCCATACAATGATATCTGTAATAA
CAGGCGCGGACGTGGAGACGGGCGGCATTTTCGACCCCCTCAACTTCAGC
AAGGATGCCGACAAGCTCGACAAATTCCGCGCCGTTGAGCTCAAGCACGG
TGCGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTC
CTTCCTTCCAATTGGCGGGGGCCACTGGACAACAATGTCATCGGCTGGGC
TTCGAGACACGCATAGACTGACGACAAAAGAATCAAACACCTTCTTGGCC
TCTTCCTCCCCCTAATCTCCCCCATCCCCCCCTCCCTCAGGCCGCATTGC
CATGCTCGGTGTGCTGGGCATCTGGATTCAGGCCGCGGGCCTCCACCTCC
CTGACCCCGTTTTTTCCAACCCCCGCCCCCTCGCTGCCCTGGTCCAGGTG
AGGAGAGGGAGGGAGGGAGGGATGGATGGAGGGAGGGAAGAGAGGACTGT
TGAGCCATACCTCCTGATTCTGCTGCTGCTGCTGCTGCTGCTGATGATGA
TGATGATGATGATGATGATGATGATGATGATGATGATGATGAGATGTTTG
TCGTACTGCTGCTACTGCTGCTTCCCTCTTCGCCTCGTCCAGCCTATTTT
AGGGACGTCCTTATCCCCACTACCTCCTCGTACATCCAATGACCGACCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGTATCGACC
GAGCGCCCTCTGGCCCTTGTCCAGCTCTTGGCTGCCATCACCTGGATCGA
GCTCGTGGCCGGGAAGCAGAGCGAGAACCAGGCTCCGGGGGATCTCGGTA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGATGTTGACGGGTGG
GGGTCGAGGAGACGGGGAGAAGAGATCGGCACAAGATTATAGAGAGTGAC
AATAGAAGCTCATCAAACAGATACAGCCACCATTTTCACTCACCCGCCCC
TCCATCCCTCCCTCCCTCCTTCCCTCCCTCCAGCGAAATTCGGCAACCAG
TTCAAGCCCGAGGATGAGGAGGAGTACGCTGCCCTGCAGGTAGGAAGAGG
GAGGGACGGAAGTGGAGAAGGAAAATCGTCACGGACTCTCATTTGTCCTT
TTTTTCATTTTCTGATCGATCCCTCATTCCCTCCTTCTGTCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCTT
AGTTGAAGGAGCTCAAGAATGGCCGCCTGGCCATGATTGCAAGCATGGGC
CTTCTGGTCCAGGTGCGTTCCCTCCTCCCTCCCTCCCTCCCTCCCTGCCT
CCCTCCCTCCCCTTCTGCCCTCCTGCCCTTCCCTCCCCCTCTTGCGTGCC
TTTCCTTCCATCAAGCCCTCCAGTTATGACACTCATACATCTCTACTTCG
CACGTCCACACGTCGCTCGCTCCCTTCCCCCCTCCCTCCTGCAGGAGCTT
GTCACGGGCCAGGGCATTTGGGAGCAGCTGTCTTCCGGTAACGTCTGGGC
TATCGGCGACGGCAAGGGCCTCCTCTAAACGGTCGCTTGTTCTTTCGCCC
TCAGTGTCCCTCCCCCTCTCCTTCGTAAAGGCTGAGGAGGAGAGAGGAAA
AGGGAGGGGAAGAAGTGATTGCCTTGGGTGTGTTTTGTGGGTTGGAAGCG
GGGGAGCGAGGAAGGAGAGAGGGAGGGATGGCGTGCTTTTACTCTCTGCG
GAGAGGATGGGTGGCGCGCATCCTTCCAGATCCTAGTTTGGAGGAGGGAG
GACAATAGAAAGAAAAAAAGAAGAAAAGAAAATGACGTTCATAAGACACA
CATCATGTGTTGAACTACTTTTCTTCTGTGTGTGATTTG
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Coding sequence (CDS) from alignment at chr26:571822..574660+

>NO26G01720.1 ID=NO26G01720.1|Name=NO26G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr26:571822..574660+ (Nannochloropsis oceanica)
ATGAAGTTTGCTGCTTTCGCCTGCCTGGCCTCTTTGATGGGTGCCTCCGC
CTTTGTCGCTCCTGCGCCCAAGCAGATGCGCAGCCGCGGCATGGCCCGTA
TGGCAGTTGATGACTTGATCGGCGCGGACGTGGAGACGGGCGGCATTTTC
GACCCCCTCAACTTCAGCAAGGATGCCGACAAGCTCGACAAATTCCGCGC
CGTTGAGCTCAAGCACGGCCGCATTGCCATGCTCGGTGTGCTGGGCATCT
GGATTCAGGCCGCGGGCCTCCACCTCCCTGACCCCGTTTTTTCCAACCCC
CGCCCCCTCGCTGCCCTGGTCCAGGTATCGACCGAGCGCCCTCTGGCCCT
TGTCCAGCTCTTGGCTGCCATCACCTGGATCGAGCTCGTGGCCGGGAAGC
AGAGCGAGAACCAGGCTCCGGGGGATCTCGCGAAATTCGGCAACCAGTTC
AAGCCCGAGGATGAGGAGGAGTACGCTGCCCTGCAGTTGAAGGAGCTCAA
GAATGGCCGCCTGGCCATGATTGCAAGCATGGGCCTTCTGGTCCAGGAGC
TTGTCACGGGCCAGGGCATTTGGGAGCAGCTGTCTTCCGGTAACGTCTGG
GCTATCGGCGACGGCAAGGGCCTCCTCTAA
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Synonyms
Publications