NO26G01250.1, NO26G01250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01250.1
Unique NameNO26G01250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2123
Alignment locationchr26:401267..403647 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:401267..403647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO26G01250.1 vs.
Match: EWM23136.1 (beta-1,3-glucan-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 772.3 bits (1993), Expect = 1.000e-219
Identity = 374/481 (77.75%), Postives = 412/481 (85.65%), Query Frame = 0 
Query:   87 AVEGAGAEVLVFEDTFEELDMDIWEHDITMSGGGNWEFQYYTNNRTNSFVEDGVLYLQPTLTAETLGEENVLGEKPFRYDMWGMWPSDACTSNAFYGCERMADAGAQLVINPVQSARLRTTGTFTFQYGRLEVEAKLPRGDWLWPAIWLLPEKNAYGQWPASGEIDLMESRGNKPGYSKGGFDSFGSCMHWGPYFALDKFEMTCQSYTLPKGTGTFNDDFHVFGLAWDEHGLFTYLDTEDQKILEVKFDKPFFSRGAFADVPGTHNPWEGRSNAAPFDQPFYLILNVAVGGLSNFFVDGEDGKPWTNTGTGAPYLFAKAKDVWYPTWAGRDSALQVKSVRVWQKPGQGTAKVLGQKLGAGTAIASADTGAGDESVIPPTY-------RHKSSGGAKRSGMAG------SGSAGGWIFGSLLLLVLVSAGVAFGVYLRMGGFPGIGNRVGGG-GGGAYTSVTG--AAPYQAAFSSAPATTST 552
            AVEGA AEVLVFEDTFEELDM+IW HDITM+GGGNWEFQYYTNNR+NSFVE+GVLYLQPTLT ET+GE N++GEKPFR+DMWGMWPSDACTSNAFYGCER++DAGAQLVINPVQSARLRTTGTFTFQYGRLEVEAKLPRGDWLWPAIWLLPEKN YGQWPASGEID+MESRGNKPGY KGG+DSFGSCMHWGPYFALDK+EMTC+S+TLP+G GTFNDDFHVFG+ W+E GL+TYLD EDQK+LEVKFD+PFF RG FADVPGT NPW GR NAAPFDQPFYL+LNVAVGGLSNFF DGEDGKPWTNTG GAPYLFAKAKD WYP+WAGRDSALQVKSVRVWQKPGQG A VLG+K   G  +     GAG+++V+ P+         H+++   +   ++G       GS GGWIFGSLL LVL  AGVA+GVYLRMGGFPG GNRVGGG GG AYTSV G   APYQA  S + AT ST
Sbjct:   42 AVEGAEAEVLVFEDTFEELDMEIWAHDITMAGGGNWEFQYYTNNRSNSFVEEGVLYLQPTLTEETIGEANMMGEKPFRFDMWGMWPSDACTSNAFYGCERISDAGAQLVINPVQSARLRTTGTFTFQYGRLEVEAKLPRGDWLWPAIWLLPEKNVYGQWPASGEIDVMESRGNKPGYVKGGYDSFGSCMHWGPYFALDKYEMTCESFTLPEGKGTFNDDFHVFGMVWNEQGLYTYLDREDQKVLEVKFDRPFFERGDFADVPGTGNPWIGRPNAAPFDQPFYLVLNVAVGGLSNFFEDGEDGKPWTNTGKGAPYLFAKAKDEWYPSWAGRDSALQVKSVRVWQKPGQGKASVLGEKPREGAGVG----GAGNDAVLAPSSAPRKGHDSHQNNDSHQNKPLSGVDTSKRRGSTGGWIFGSLLALVLAGAGVAYGVYLRMGGFPGTGNRVGGGRGGQAYTSVVGGSVAPYQAT-SYSDATRST 517
The following BLAST results are available for this feature:
BLAST of NO26G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23136.11.000e-21977.75beta-1,3-glucan-binding protein [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01250NO26G01250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01250.1NO26G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01250.1.cds1NO26G01250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01250.1.cds2NO26G01250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01250.1 ID=NO26G01250.1|Name=NO26G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp
AGGCACCGCTTGTGTGTGATTTTCGTACCAAGCGGTATTCATGGTGAGAG
CATTCATCGGCGCGGCCGTGGCCACGGCTAGTTTGACCATCGGATCTGCC
GCCTCCCTTACCAGTCAGGCTTCCGCTACGTCTTTGGATGCAGAGCGCCA
GGCGTTAGAGCAATGGAGCAGTAAGCTGGCGGAGCGTGAGGCACAGCTAC
GAGCACGGGAGAAGGCGCTGGGCGAAAAGGTGCTGGGGGGGGGGAAGGGC
CGCACTGTGGCGACGGGCAGCTGGCGGAAGAGTCTGGTCACGGGTTTGGC
GGTGGAGGGGGCCGGGGCGGAAGTGCTCGTATTCGAGGATACGTTCGAGG
AGCTCGACATGGACATCTGGGAGCATGACATCACCATGTCCGGCGGCGGG
AATTGGGAGTTCCAGTACTACACCAACAATCGCACCAACAGCTTCGTGGA
AGACGGCGTGCTTTACCTGCAGCCCACGCTGACGGCCGAGACGTTGGGGG
AGGAGAACGTGCTGGGCGAGAAGCCGTTCCGCTACGACATGTGGGGCATG
TGGCCGTCCGACGCCTGCACGTCCAACGCCTTCTACGGTTGCGAGCGTAT
GGCAGATGCCGGCGCGCAGCTGGTGATTAACCCGGTGCAGTCGGCGCGCC
TGCGTACCACGGGCACCTTCACGTTTCAATATGGTCGCCTGGAGGTGGAG
GCCAAGCTGCCGCGCGGGGATTGGCTCTGGCCCGCCATCTGGCTGCTACC
CGAGAAGAATGCCTACGGGCAGTGGCCAGCCTCGGGCGAAATCGACTTGA
TGGAGTCGCGAGGCAATAAACCAGGGTACAGTAAGGGTGGTTTCGACTCC
TTCGGCAGCTGCATGCACTGGGGGCCCTACTTTGCGCTTGACAAGTTCGA
GATGACCTGCCAGTCGTACACGCTCCCCAAAGGCACAGGCACCTTCAATG
ACGACTTCCATGTCTTCGGTCTGGCCTGGGACGAGCACGGCCTCTTCACC
TACCTGGACACGGAGGACCAAAAGATCCTTGAGGTCAAGTTCGACAAACC
CTTCTTCTCGCGGGGCGCCTTCGCCGACGTGCCCGGCACGCATAACCCCT
GGGAGGGCCGTTCCAACGCCGCGCCCTTCGACCAGCCGTTTTATCTGATC
CTGAACGTTGCTGTGGGTGGCCTCTCCAACTTTTTTGTGGATGGTGAGGA
CGGCAAGCCGTGGACCAACACGGGCACCGGCGCGCCCTACCTGTTCGCCA
AGGCCAAGGATGTCTGGTACCCGACATGGGCCGGTCGGGACTCTGCGCTG
CAGGTTAAGTCCGTGCGCGTCTGGCAGAAGCCCGGGCAGGGCACGGCCAA
GGTCCTGGGTCAAAAGCTGGGGGCTGGCACAGCCATAGCCAGCGCAGACA
CCGGTGCGGGGGACGAGTCCGTCATCCCCCCCACCTACCGTCACAAGAGC
AGCGGGGGCGCCAAAAGAAGTGGCATGGCAGGCAGTGGCAGCGCCGGCGG
CTGGATCTTTGGCTCTTTGTTGCTCCTAGTGCTTGTCAGCGCTGGGGTAG
CTTTCGGAGTGTATTTGCGCATGGGCGGCTTCCCAGGCATTGGCAATAGG
GTGGGTGGCGGTGGTGGGGGAGCCTATACGAGTGTGACAGGGGCAGCACC
ATACCAAGCCGCCTTTTCCTCTGCCCCGGCAACAACTTCGACACAACAGC
GCCGATAGAGAGTAAAAAGCAGCGTGAACATCTTTGCTTGGTGCTTGATT
CGTAAAAACTGATGTGGGCCTGGGACCAAACCTTGTGGAGTGATTCCACG
CACACTGCTGGCCATCCTTGCAAGCAAAGACTAGGGTATAGGGACCGGCG
AATAGGCACCACCGTCTTCTAATGCATGTTGTGGTGATTTCTTCGTGAAC
ATGGAAGTTTCTGCATTACGTATGAAGATAGCGTTACGAATAAAGGAGAT
AGCATGAAAGGTCCCTGATGCAGAGACTATGGAGGCGAAATAGCGATACG
GTGTATGGAGACATTTGGATGGCGGGGGAGGGCATTTTTGGGCGAGAAGG
AAGGATAGTTTCTAAAGAACCAATTTAAAGGAAAAAGACACACCAAGTCA
CGTAGTGAAAAATGTAGACCTGA
back to top

protein sequence of NO26G01250.1

>NO26G01250.1-protein ID=NO26G01250.1-protein|Name=NO26G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MVRAFIGAAVATASLTIGSAASLTSQASATSLDAERQALEQWSSKLAERE
AQLRAREKALGEKVLGGGKGRTVATGSWRKSLVTGLAVEGAGAEVLVFED
TFEELDMDIWEHDITMSGGGNWEFQYYTNNRTNSFVEDGVLYLQPTLTAE
TLGEENVLGEKPFRYDMWGMWPSDACTSNAFYGCERMADAGAQLVINPVQ
SARLRTTGTFTFQYGRLEVEAKLPRGDWLWPAIWLLPEKNAYGQWPASGE
IDLMESRGNKPGYSKGGFDSFGSCMHWGPYFALDKFEMTCQSYTLPKGTG
TFNDDFHVFGLAWDEHGLFTYLDTEDQKILEVKFDKPFFSRGAFADVPGT
HNPWEGRSNAAPFDQPFYLILNVAVGGLSNFFVDGEDGKPWTNTGTGAPY
LFAKAKDVWYPTWAGRDSALQVKSVRVWQKPGQGTAKVLGQKLGAGTAIA
SADTGAGDESVIPPTYRHKSSGGAKRSGMAGSGSAGGWIFGSLLLLVLVS
AGVAFGVYLRMGGFPGIGNRVGGGGGGAYTSVTGAAPYQAAFSSAPATTS
TQQRR*
back to top

mRNA from alignment at chr26:401267..403647+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01250.1 ID=NO26G01250.1|Name=NO26G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at chr26:401267..403647+ (Nannochloropsis oceanica)
AGGCACCGCTTGTGTGTGATTTTCGTACCAAGCGGTATTCATGGTGAGAG
CATTCATCGGCGCGGCCGTGGCCACGGCTAGTTTGACCATCGGATCTGCC
GCCTCCCTTACCAGTCAGGCTTCCGCTACGTCTTTGGATGCAGAGCGCCA
GGCGTTAGAGCAATGGAGCAGTAAGGTAAGCGCGTAGGAGGGATGTAATG
GCTTGGTGGGATGCCCTGGTCCATGCTGGTGCGCTGGACCATGCATAGAC
CAATAGGAACCCGTGAATATTTTTGGAGTGTGGACTTTGGATCAAACATG
AATTGGAGGCGACAAGGGCATGTTTGTAGCTGTCATCTGTCGGCCTCTAT
CTCTGTGAATATTTATGGAATGCATCTCAGCACGCACTAATCCTGCTCCA
CTCCCACCCTCCCTCCCTTTCTCCCTCCTGAAGCTGGCGGAGCGTGAGGC
ACAGCTACGAGCACGGGAGAAGGCGCTGGGCGAAAAGGTGCTGGGGGGGG
GGAAGGGCCGCACTGTGGCGACGGGCAGCTGGCGGAAGAGTCTGGTCACG
GGTTTGGCGGTGGAGGGGGCCGGGGCGGAAGTGCTCGTATTCGAGGATAC
GTTCGAGGAGCTCGACATGGACATCTGGGAGCATGACATCACCATGTCCG
GCGGCGGGAATTGGGAGTTCCAGTACTACACCAACAATCGCACCAACAGC
TTCGTGGAAGACGGCGTGCTTTACCTGCAGCCCACGCTGACGGCCGAGAC
GTTGGGGGAGGAGAACGTGCTGGGCGAGAAGCCGTTCCGCTACGACATGT
GGGGCATGTGGCCGTCCGACGCCTGCACGTCCAACGCCTTCTACGGTTGC
GAGCGTATGGCAGATGCCGGCGCGCAGCTGGTGATTAACCCGGTGCAGTC
GGCGCGCCTGCGTACCACGGGCACCTTCACGTTTCAATATGGTCGCCTGG
AGGTGGAGGCCAAGCTGCCGCGCGGGGATTGGCTCTGGCCCGCCATCTGG
CTGCTACCCGAGAAGAATGCCTACGGGCAGTGGCCAGCCTCGGGCGAAAT
CGACTTGATGGAGTCGCGAGGCAATAAACCAGGGTACAGTAAGGGTGGTT
TCGACTCCTTCGGCAGCTGCATGCACTGGGGGCCCTACTTTGCGCTTGAC
AAGTTCGAGATGACCTGCCAGTCGTACACGCTCCCCAAAGGCACAGGCAC
CTTCAATGACGACTTCCATGTCTTCGGTCTGGCCTGGGACGAGCACGGCC
TCTTCACCTACCTGGACACGGAGGACCAAAAGATCCTTGAGGTCAAGTTC
GACAAACCCTTCTTCTCGCGGGGCGCCTTCGCCGACGTGCCCGGCACGCA
TAACCCCTGGGAGGGCCGTTCCAACGCCGCGCCCTTCGACCAGCCGTTTT
ATCTGATCCTGAACGTTGCTGTGGGTGGCCTCTCCAACTTTTTTGTGGAT
GGTGAGGACGGCAAGCCGTGGACCAACACGGGCACCGGCGCGCCCTACCT
GTTCGCCAAGGCCAAGGATGTCTGGTACCCGACATGGGCCGGTCGGGACT
CTGCGCTGCAGGTTAAGTCCGTGCGCGTCTGGCAGAAGCCCGGGCAGGGC
ACGGCCAAGGTCCTGGGTCAAAAGCTGGGGGCTGGCACAGCCATAGCCAG
CGCAGACACCGGTGCGGGGGACGAGTCCGTCATCCCCCCCACCTACCGTC
ACAAGAGCAGCGGGGGCGCCAAAAGAAGTGGCATGGCAGGCAGTGGCAGC
GCCGGCGGCTGGATCTTTGGCTCTTTGTTGCTCCTAGTGCTTGTCAGCGC
TGGGGTAGCTTTCGGAGTGTATTTGCGCATGGGCGGCTTCCCAGGCATTG
GCAATAGGGTGGGTGGCGGTGGTGGGGGAGCCTATACGAGTGTGACAGGG
GCAGCACCATACCAAGCCGCCTTTTCCTCTGCCCCGGCAACAACTTCGAC
ACAACAGCGCCGATAGAGAGTAAAAAGCAGCGTGAACATCTTTGCTTGGT
GCTTGATTCGTAAAAACTGATGTGGGCCTGGGACCAAACCTTGTGGAGTG
ATTCCACGCACACTGCTGGCCATCCTTGCAAGCAAAGACTAGGGTATAGG
GACCGGCGAATAGGCACCACCGTCTTCTAATGCATGTTGTGGTGATTTCT
TCGTGAACATGGAAGTTTCTGCATTACGTATGAAGATAGCGTTACGAATA
AAGGAGATAGCATGAAAGGTCCCTGATGCAGAGACTATGGAGGCGAAATA
GCGATACGGTGTATGGAGACATTTGGATGGCGGGGGAGGGCATTTTTGGG
CGAGAAGGAAGGATAGTTTCTAAAGAACCAATTTAAAGGAAAAAGACACA
CCAAGTCACGTAGTGAAAAATGTAGACCTGA
back to top

Coding sequence (CDS) from alignment at chr26:401267..403647+

>NO26G01250.1 ID=NO26G01250.1|Name=NO26G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr26:401267..403647+ (Nannochloropsis oceanica)
ATGGTGAGAGCATTCATCGGCGCGGCCGTGGCCACGGCTAGTTTGACCAT
CGGATCTGCCGCCTCCCTTACCAGTCAGGCTTCCGCTACGTCTTTGGATG
CAGAGCGCCAGGCGTTAGAGCAATGGAGCAGTAAGCTGGCGGAGCGTGAG
GCACAGCTACGAGCACGGGAGAAGGCGCTGGGCGAAAAGGTGCTGGGGGG
GGGGAAGGGCCGCACTGTGGCGACGGGCAGCTGGCGGAAGAGTCTGGTCA
CGGGTTTGGCGGTGGAGGGGGCCGGGGCGGAAGTGCTCGTATTCGAGGAT
ACGTTCGAGGAGCTCGACATGGACATCTGGGAGCATGACATCACCATGTC
CGGCGGCGGGAATTGGGAGTTCCAGTACTACACCAACAATCGCACCAACA
GCTTCGTGGAAGACGGCGTGCTTTACCTGCAGCCCACGCTGACGGCCGAG
ACGTTGGGGGAGGAGAACGTGCTGGGCGAGAAGCCGTTCCGCTACGACAT
GTGGGGCATGTGGCCGTCCGACGCCTGCACGTCCAACGCCTTCTACGGTT
GCGAGCGTATGGCAGATGCCGGCGCGCAGCTGGTGATTAACCCGGTGCAG
TCGGCGCGCCTGCGTACCACGGGCACCTTCACGTTTCAATATGGTCGCCT
GGAGGTGGAGGCCAAGCTGCCGCGCGGGGATTGGCTCTGGCCCGCCATCT
GGCTGCTACCCGAGAAGAATGCCTACGGGCAGTGGCCAGCCTCGGGCGAA
ATCGACTTGATGGAGTCGCGAGGCAATAAACCAGGGTACAGTAAGGGTGG
TTTCGACTCCTTCGGCAGCTGCATGCACTGGGGGCCCTACTTTGCGCTTG
ACAAGTTCGAGATGACCTGCCAGTCGTACACGCTCCCCAAAGGCACAGGC
ACCTTCAATGACGACTTCCATGTCTTCGGTCTGGCCTGGGACGAGCACGG
CCTCTTCACCTACCTGGACACGGAGGACCAAAAGATCCTTGAGGTCAAGT
TCGACAAACCCTTCTTCTCGCGGGGCGCCTTCGCCGACGTGCCCGGCACG
CATAACCCCTGGGAGGGCCGTTCCAACGCCGCGCCCTTCGACCAGCCGTT
TTATCTGATCCTGAACGTTGCTGTGGGTGGCCTCTCCAACTTTTTTGTGG
ATGGTGAGGACGGCAAGCCGTGGACCAACACGGGCACCGGCGCGCCCTAC
CTGTTCGCCAAGGCCAAGGATGTCTGGTACCCGACATGGGCCGGTCGGGA
CTCTGCGCTGCAGGTTAAGTCCGTGCGCGTCTGGCAGAAGCCCGGGCAGG
GCACGGCCAAGGTCCTGGGTCAAAAGCTGGGGGCTGGCACAGCCATAGCC
AGCGCAGACACCGGTGCGGGGGACGAGTCCGTCATCCCCCCCACCTACCG
TCACAAGAGCAGCGGGGGCGCCAAAAGAAGTGGCATGGCAGGCAGTGGCA
GCGCCGGCGGCTGGATCTTTGGCTCTTTGTTGCTCCTAGTGCTTGTCAGC
GCTGGGGTAGCTTTCGGAGTGTATTTGCGCATGGGCGGCTTCCCAGGCAT
TGGCAATAGGGTGGGTGGCGGTGGTGGGGGAGCCTATACGAGTGTGACAG
GGGCAGCACCATACCAAGCCGCCTTTTCCTCTGCCCCGGCAACAACTTCG
ACACAACAGCGCCGATAG
back to top
Synonyms
Publications