NO25G00760.1, NO25G00760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00760.1
Unique NameNO25G00760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1469
Alignment locationchr25:209072..211448 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:209072..211448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO25G00760.1 vs.
Match: XP_005854211.1 (large subunit ribosomal protein L6e [Nannochloropsis gaditana CCMP526]; EKU22150.1 large subunit ribosomal protein L6e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 380.6 bits (976), Expect = 5.500e-102
Identity = 197/229 (86.03%), Postives = 209/229 (91.27%), Query Frame = 0 
Query:  129 MAPKKVNKRAGKPRTTMLARGVPSLSHSATVKKGGRYKFFGKGGKKAVTAAPATGKAPRFYPADDIPVPRRSARHVQKPTKLKAGIVPGSILIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQAVDISAVKVPATMDDNYFARPADAE-EGDILAAGTGKKATVVSEGRKKDQEAVDTQVLAAIKKVPQLDGYVKARFSLKKGVKPHEIKF 357
            MAPKK NKRAGKPRTT+LARGVPSLSH+ATVKKGGRY+FFGKGGKKA   APA GKAPRFYPADDIPVPRRSARH+QKPTKLKAGI PGS+LIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQ VDISAVKVP T++D YFA PAD + +  ILAAG GKKAT VSE RKKDQ+AVD QVL A+KKV QLDGY+KARFSLKKGVKPHEIKF
Sbjct:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKF 229
The following BLAST results are available for this feature:
BLAST of NO25G00760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854211.15.500e-10286.03large subunit ribosomal protein L6e [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00760NO25G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00760.1NO25G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00760.1.cds1NO25G00760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00760.1.cds2NO25G00760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00760.1.cds3NO25G00760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00760.1 ID=NO25G00760.1|Name=NO25G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1469bp
ATCCTCACAGTCTTCCCCCTCTGTCACCTCCCTCTGTGTGGTGGTCGAGA
AAGCATCGCGGTCCTCTCCCTCCTCCATGACAATGCGTGCACAAACATGC
CTGGCTCTATCAGATACTCCACAATCACCCACACGCAGGTGCCTGGAAAC
CGGAACGGGTGGGAAGGTTTTATGAAGCGAGGCTTGTGTGGTGGTGGATG
GTGGAGGGCTCTGCAGCAGCGAACACTCCCCTCCTCATCGTCCATGCCAG
CCAGGCGACGACGATCACAAGTGTGGCAGAGGATTGCCGAGACTCACAAC
CCCTTCCTTGACCTCGATGACGATGCGCAGCCTCCTATGTGTCTGCGTGT
GTCGATGAATGGCTCTCCTGTCTTCACTGCCCAGCATCGTGAGAGGGGGG
GCCAAAAAGAAGTAAAGAAGAGGGACATCCCACCAAACCACACTAACCAT
GCCTTTCTTGCGCCTTCCAACACAGACACGATGGCCCCCAAGAAAGTCAA
TAAACGCGCGGGCAAGCCTCGCACGACGATGCTGGCCCGAGGTGTACCCT
CCTTGAGCCACTCGGCGACCGTCAAGAAGGGTGGCCGGTATAAGTTCTTC
GGCAAGGGCGGGAAGAAGGCCGTGACCGCGGCCCCCGCCACGGGCAAGGC
CCCACGTTTCTACCCTGCGGATGACATTCCCGTCCCTCGCCGTAGCGCCC
GCCATGTGCAGAAGCCGACCAAGCTGAAGGCTGGCATCGTACCGGGCTCC
ATTCTTATCATGCTTGCGGGCCGATTCCGTGGCAAGCGTGTGGTGTTCCT
CAAGCAGTTGGCATCGGGCACGCTGCTTGTGACTGGCCCCTACTCTTTGA
ATGGCGTGCCTCTGCGACGCGTGAACCAAGCCTACGTCATCGTCACCTCC
CAAGCGGTCGACATCTCGGCCGTCAAGGTGCCTGCCACCATGGACGACAA
TTACTTCGCGCGTCCGGCGGATGCGGAGGAGGGGGATATCCTGGCAGCAG
GAACGGGAAAGAAAGCCACAGTAGTATCTGAGGGAAGGAAGAAGGACCAG
GAGGCCGTGGACACACAGGTGCTTGCGGCGATCAAGAAGGTGCCGCAGTT
AGACGGCTACGTGAAGGCCCGCTTTTCGTTGAAGAAGGGGGTGAAGCCCC
ACGAGATCAAGTTCTGAGTTCCAGAAATGTGATGAATATGGAAGGAGGAA
GGACGCGCGCTGTTTGATTTCTCTTCTGTTGGCATGAAGAGGATGGATGG
GGAAGCAACGGGAGGTTTGTACTCTCTTGTCATTCTTTTCAGGCAGGAGA
CGCGTAGGGGATGCATCGCGCGGCGTGATTTAGTTTAGCTAAGCAATTAT
TTTACAATGCGCCCCCAAAAACAAAACCCCAAAAGAAAGGAAAACAAAGA
CAGCTAGAATCAAAAAGGTGCGGGGAGGGGAGTTGTGGCTTTGCGTTTTT
CGAGCACTCGCTGGAAGTG
back to top

protein sequence of NO25G00760.1

>NO25G00760.1-protein ID=NO25G00760.1-protein|Name=NO25G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MPGSIRYSTITHTQVPGNRNGWEGFMKRGLCGGGWWRALQQRTLPSSSSM
PARRRRSQVWQRIAETHNPFLDLDDDAQPPMCLRVSMNGSPVFTAQHRER
GGQKEVKKRDIPPNHTNHAFLAPSNTDTMAPKKVNKRAGKPRTTMLARGV
PSLSHSATVKKGGRYKFFGKGGKKAVTAAPATGKAPRFYPADDIPVPRRS
ARHVQKPTKLKAGIVPGSILIMLAGRFRGKRVVFLKQLASGTLLVTGPYS
LNGVPLRRVNQAYVIVTSQAVDISAVKVPATMDDNYFARPADAEEGDILA
AGTGKKATVVSEGRKKDQEAVDTQVLAAIKKVPQLDGYVKARFSLKKGVK
PHEIKF*
back to top

mRNA from alignment at chr25:209072..211448+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00760.1 ID=NO25G00760.1|Name=NO25G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2377bp|location=Sequence derived from alignment at chr25:209072..211448+ (Nannochloropsis oceanica)
ATCCTCACAGTCTTCCCCCTCTGTCACCTCCCTCTGTGTGGTGGTCGAGA
AAGCATCGCGGTCCTCTCCCTCCTCCATGACAATGCGTGCACAAACATGC
CTGGCTCTATCAGATACTCCACAATCACCCACACGCAGGTGCCTGGAAAC
CGGAACGGGTGGGAAGGTTTTATGAAGCGAGGCTTGTGTGGTGGTGGATG
GTGGAGGGCTCTGCAGCAGCGAACACTCCCCTCCTCATCGTCCATGCCAG
CCAGGCGACGACGATCACAAGTGTGGCAGAGGATTGCCGAGACTCACAAC
CCCTTCCTTGACCTCGATGACGATGCGCAGCCTCCTATGTGTCTGCGTGT
GTCGATGAATGGCTCTCCTGTCTTCACTGCCCAGCATCGTGAGAGGGGGG
GCCAAAAAGAAGTAAAGAAGAGGGACATCCCACCAAACCACACTAACCAT
GCCTTTCTTGCGCCTTCCAACACAGACACGATGGCCCCCAAGAAAGTCAA
TAAACGCGCGGGCAAGCCTCGCACGACGATGCTGGCCCGAGGTGTACCCT
CCTTGAGCCACTCGGCGGTACGTGCAGCAGACCCCTCTTCCCCCCCCCCC
CTCTCCCTCCCTCGCTCCCCTTGTCTTCCTTCCCCTTCCGCTCCCTCACC
ATTTTTATTGACATACAACAGACCGTCAAGAAGGGTGGCCGGTATAAGTT
CTTCGGCAAGGGCGGGAAGAAGGCCGTGACCGCGGCCCCCGCCACGGGCA
AGGCCCCACGTTTCTACCCTGCGGATGACATTCCCGTCCCTCGCCGTAGC
GCCCGCCATGTGCAGAAGCCGACCAAGCTGAAGGCTGGCATCGTACCGGG
CTCCATTCTTATCATGCTTGCGGGCCGATTCCGTGGCAAGCGTGTGGTGT
TCCTCAAGCAGTTGGCATCGGGCACGCTGCTTGTGACTGGTACGTCTCAT
GTGAGGAGAGGTGACAGTGGATTAGGAGGACAAAGTTCTTGATCTTGGAG
TGTTTTATTCTCCTTCTTCTGGTCTTTCCTTCCTCTTCTTCTACGCTTCT
GTCCCCTCGCTTTCTATGCTCCCTCGTCAAAATGAAGGCCCAAGGATTAA
AATTGATTTATACGATGGCCTGTGGCCTCACCCTTCCCGCGTGGCGACAT
CCAAAAAGGACGCACATGGCCGACATACACAACCTGAAAACATTGAGGGA
GAGAGGTGGAGGGAAGGAGAAGAGAGGGTTGTACCGAAGGAAAGGAGCGG
GGAGAGGAGAGGGAGGGGGGTGGAAGTGGGGGGCAGGTCGTGAGGATAGG
CAGGATGTTTTGGGCTAACCCTTCGCATTTCTGTCAACGTCCAAGCGTCC
TGTTTTTCCTCCCTTTCACTCTTCCCTCTTTTTCTCATCTTCTATCGTTT
TCTTCTGTGCTGCTCTTCTTTAATTCCGGACCACCTCTTTTCTCTGTGGG
ATCTGGGCGTGGGTGGTGACAGGGTGTTGATTGGTGTTGCCTGGGGGGTG
GCAAGAGGGCATGTGAAAGGGCCGATGACGTTCTGGATTATGAGAGATGA
GGGCTCTTCTTATTCTTTATTATTTTATTTGATGTCTTCGACTTCGACTT
TACTACTGACTTACACTAGATTTATTTGCCAGGAAGAGAGAGAAGGGAGA
GCAACAACACTCAGTTATGCCACGCTCCACTTGCGCAAACTCAACTCTTT
CCTTTTTCTCTCCCTTCCCCCCCCCCCTTGCTCCCTCCACTAGGCCCCTA
CTCTTTGAATGGCGTGCCTCTGCGACGCGTGAACCAAGCCTACGTCATCG
TCACCTCCCAAGCGGTCGACATCTCGGCCGTCAAGGTGCCTGCCACCATG
GACGACAATTACTTCGCGCGTCCGGCGGATGCGGAGGAGGGGGATATCCT
GGCAGCAGGAACGGGAAAGAAAGCCACAGTAGTATCTGAGGGAAGGAAGA
AGGACCAGGAGGCCGTGGACACACAGGTGCTTGCGGCGATCAAGAAGGTG
CCGCAGTTAGACGGCTACGTGAAGGCCCGCTTTTCGTTGAAGAAGGGGGT
GAAGCCCCACGAGATCAAGTTCTGAGTTCCAGAAATGTGATGAATATGGA
AGGAGGAAGGACGCGCGCTGTTTGATTTCTCTTCTGTTGGCATGAAGAGG
ATGGATGGGGAAGCAACGGGAGGTTTGTACTCTCTTGTCATTCTTTTCAG
GCAGGAGACGCGTAGGGGATGCATCGCGCGGCGTGATTTAGTTTAGCTAA
GCAATTATTTTACAATGCGCCCCCAAAAACAAAACCCCAAAAGAAAGGAA
AACAAAGACAGCTAGAATCAAAAAGGTGCGGGGAGGGGAGTTGTGGCTTT
GCGTTTTTCGAGCACTCGCTGGAAGTG
back to top

Coding sequence (CDS) from alignment at chr25:209072..211448+

>NO25G00760.1 ID=NO25G00760.1|Name=NO25G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr25:209072..211448+ (Nannochloropsis oceanica)
ATGCCTGGCTCTATCAGATACTCCACAATCACCCACACGCAGGTGCCTGG
AAACCGGAACGGGTGGGAAGGTTTTATGAAGCGAGGCTTGTGTGGTGGTG
GATGGTGGAGGGCTCTGCAGCAGCGAACACTCCCCTCCTCATCGTCCATG
CCAGCCAGGCGACGACGATCACAAGTGTGGCAGAGGATTGCCGAGACTCA
CAACCCCTTCCTTGACCTCGATGACGATGCGCAGCCTCCTATGTGTCTGC
GTGTGTCGATGAATGGCTCTCCTGTCTTCACTGCCCAGCATCGTGAGAGG
GGGGGCCAAAAAGAAGTAAAGAAGAGGGACATCCCACCAAACCACACTAA
CCATGCCTTTCTTGCGCCTTCCAACACAGACACGATGGCCCCCAAGAAAG
TCAATAAACGCGCGGGCAAGCCTCGCACGACGATGCTGGCCCGAGGTGTA
CCCTCCTTGAGCCACTCGGCGACCGTCAAGAAGGGTGGCCGGTATAAGTT
CTTCGGCAAGGGCGGGAAGAAGGCCGTGACCGCGGCCCCCGCCACGGGCA
AGGCCCCACGTTTCTACCCTGCGGATGACATTCCCGTCCCTCGCCGTAGC
GCCCGCCATGTGCAGAAGCCGACCAAGCTGAAGGCTGGCATCGTACCGGG
CTCCATTCTTATCATGCTTGCGGGCCGATTCCGTGGCAAGCGTGTGGTGT
TCCTCAAGCAGTTGGCATCGGGCACGCTGCTTGTGACTGGCCCCTACTCT
TTGAATGGCGTGCCTCTGCGACGCGTGAACCAAGCCTACGTCATCGTCAC
CTCCCAAGCGGTCGACATCTCGGCCGTCAAGGTGCCTGCCACCATGGACG
ACAATTACTTCGCGCGTCCGGCGGATGCGGAGGAGGGGGATATCCTGGCA
GCAGGAACGGGAAAGAAAGCCACAGTAGTATCTGAGGGAAGGAAGAAGGA
CCAGGAGGCCGTGGACACACAGGTGCTTGCGGCGATCAAGAAGGTGCCGC
AGTTAGACGGCTACGTGAAGGCCCGCTTTTCGTTGAAGAAGGGGGTGAAG
CCCCACGAGATCAAGTTCTGA
back to top
Synonyms
Publications