NO20G02130.2, NO20G02130.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02130.2
Unique NameNO20G02130.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1406
Alignment locationchr20:637000..638714 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:637000..638714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02130.2 vs.
Match: EWM22022.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 5.500e-53
Identity = 114/154 (74.03%), Postives = 130/154 (84.42%), Query Frame = 0 
Query:    1 MALSRF---DPFGSMLTERDPFADFFSTGGGWLAPSGVGGGALTSGGMGRGQAIVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAE 152
            MALSR+   DP GS L ERDPFADFFSTGGGWL PS   GGAL++G   RGQ +VP+L+LDVKEKNNEF+VA+DAPGMKKEDFDVTF+NNVLRVACERKEEKEEEDARWHISERRWGS SRSVRLPR A  + I AEYD+GVLK+   + +++E
Sbjct:    1 MALSRYWRDDPLGSNLIERDPFADFFSTGGGWLTPSV--GGALSTG-TSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESE 151
The following BLAST results are available for this feature:
BLAST of NO20G02130.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22022.15.500e-5374.03heat shock protein hsp20 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02130NO20G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02130.2NO20G02130.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02130.2.cds1NO20G02130.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02130.2.cds2NO20G02130.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02130.2.cds3NO20G02130.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02130.2 ID=NO20G02130.2|Name=NO20G02130.2|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
GTTTGTTTGTTTGTTTGTTTGTTTTGTGAGTGTATGGCATGGCTTTCTTT
CACCCCCGGGACCTTTAATGAAAGCACGACATAGTTTGTAATCTTTTTCC
CCCAGACACCACATGACTGGGCACACATTTTCCCAGCCTTTCCTTCTGTC
CTGGTGTGCCTATTCTGTGTATCTTTTGGACCAACCGAATGTTCTGTTCT
ACATTGTGCATGTGTAGGCTGTCTCATTGACTTCGTGCTCCTCGCCACCC
ACACTCACGTCCTATACATTGTACCATCGCGCCATAGCACCGCCCCTCGT
TTGTTGGGCTTTTGTCGCAAGACGGAGACAGACACGATTTTACTCCCACA
AGCCACTATGGCTCCAGAAATACCCCCACACCACACGGGTGTGTCTTCTC
ACTGGACGTCCACAGCACCCACGGGCGTCTCATTTCTTCCCTTTCCCTCC
CTTTCATTTCCCGTGCACATGCCCATGCCCACCACAGCAGAACCCGAAGT
CTCAAGACTCAAGAACAAATCAACCAAGCCTACAACCCAACAACCATGGC
TCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGACCCGT
TTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCGGCGTG
GGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCTATCGT
GCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGAGGTCG
CTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGTTCGAG
AACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAGGAAGA
GGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTCCCGCT
CTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCGAATAC
GACGCGGGCGTTCTTAAGGTAAAGAGGATGAGAGGGAAGAAGGCAGAGAG
GGAGGGAGGGAAGAAGGGAGAGAGACAGGATGAAGCCTTTGATTCTCACA
CCACTTTCGAATTCTTTCCTCCCATTCCCTCTTTCCCCCCCTCTAGATCC
ACGTGCCTAAGACGCAGAAGAGCGAGACCCGCAAGGCCATTCGTGTGGAG
TAGAGAAGAGAATGAGAGAAGAGAGAGAGAGAGAGGGGAGAGAGAGAAAG
AGAGAGGGAGAGGGAGAGGGCGCAGGGGGAAGGGAGGAGAAAAATCTTCG
AGTTCCCAGTCCAGAGAGTGTGCAGTGTAAAACTCGTGGCCTAGATTTGT
AAACCCCTCCTAAAAGTGAAGGAAAATATTACATAGTCCTCCTTGTACGT
AGTGAGCGAGAAGAAAAGAGATCAATCGGGGAAGTAGAAGTAAGGAGCAG
GAGCAG
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protein sequence of NO20G02130.2

>NO20G02130.2-protein ID=NO20G02130.2-protein|Name=NO20G02130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MALSRFDPFGSMLTERDPFADFFSTGGGWLAPSGVGGGALTSGGMGRGQA
IVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKE
EEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKA
EREGGKKGERQDEAFDSHTTFEFFPPIPSFPPSRSTCLRRRRARPARPFV
WSREENERRERERGEREKERGRGRGRRGKGGEKSSSSQSRECAV*
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mRNA from alignment at chr20:637000..638714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02130.2 ID=NO20G02130.2|Name=NO20G02130.2|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp|location=Sequence derived from alignment at chr20:637000..638714+ (Nannochloropsis oceanica)
GTTTGTTTGTTTGTTTGTTTGTTTTGTGAGTGTATGGCATGGCTTTCTTT
CACCCCCGGGACCTTTAATGAAAGCACGACATAGTTTGTAATCTTTTTCC
CCCAGACACCACATGACTGGGCACACATTTTCCCAGCCTTTCCTTCTGTC
CTGGTGTGCCTATTCTGTGTATCTTTTGGACCAACCGAATGTTCTGTTCT
ACATTGTGCATGTGTAGGCTGTCTCATTGACTTCGTGCTCCTCGCCACCC
ACACTCACGTCCTATACATTGTACCATCGCGCCATAGCACCGCCCCTCGT
TTGTTGGGCTTTTGTCGCAAGACGGAGACAGACACGATTTTACTCCCACA
AGCCACTATGGCTCCAGAAATACCCCCACACCACACGGGTGTGTCTTCTC
ACTGGACGTCCACAGCACCCACGGGCGTCTCATTTCTTCCCTTTCCCTCC
CTTTCATTTCCCGTGCACATGCCCATGCCCACCACAGCAGAACCCGAAGT
CTCAAGACTCAAGAACAAATCAACCAAGCCTACAACCCAACAACCATGGC
TCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGACCCGT
TTGCCGACTTCTTTAGCACCGGAGGTAAGTATTCAGGAGGGAAGGAAGGT
GGAAGTGGAGAGGAGGCGGCGGTAGACAGGGATGGATGGCGGGAGGAAGA
TCTTGAAACTGAAGGAAGAGGTCACCTTTCTTTCTATAGCTGACCAGGCA
CCGGCCTCACATCCATCTTCCACCTCTCCTACACCCACCTACCCTCTCTT
TCTACACAGGCGGGTGGCTTGCCCCCAGCGGCGTGGGAGGCGGGGCTTTG
ACCAGTGGTGGCATGGGCCGCGGACAAGCTATCGTGCCCAACCTGAGCCT
GGATGTGAAGGAGAAAAACAACGAGTTTGAGGTCGCTGTTGATGCGCCGG
GCATGAAGAAGGAAGGTATGTTGGCGTTGTGGCTGAAGGGAGTGGTGAGG
ATGCTGTCTTGCCTGTTGTCTTCCTTCTGTCGTTCTTTCCTTATATCCTT
ACACCCACCCTCGCTTTCTCCCTTCCACTCTGCTTCCAGACTTCGATGTG
ACGTTCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAA
GGAGGAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTT
GCTCCCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAG
GCCGAATACGACGCGGGCGTTCTTAAGGTAAAGAGGATGAGAGGGAAGAA
GGCAGAGAGGGAGGGAGGGAAGAAGGGAGAGAGACAGGATGAAGCCTTTG
ATTCTCACACCACTTTCGAATTCTTTCCTCCCATTCCCTCTTTCCCCCCC
TCTAGATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCAAGGCCATT
CGTGTGGAGTAGAGAAGAGAATGAGAGAAGAGAGAGAGAGAGAGGGGAGA
GAGAGAAAGAGAGAGGGAGAGGGAGAGGGCGCAGGGGGAAGGGAGGAGAA
AAATCTTCGAGTTCCCAGTCCAGAGAGTGTGCAGTGTAAAACTCGTGGCC
TAGATTTGTAAACCCCTCCTAAAAGTGAAGGAAAATATTACATAGTCCTC
CTTGTACGTAGTGAGCGAGAAGAAAAGAGATCAATCGGGGAAGTAGAAGT
AAGGAGCAGGAGCAG
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Coding sequence (CDS) from alignment at chr20:637000..638714+

>NO20G02130.2 ID=NO20G02130.2|Name=NO20G02130.2|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr20:637000..638714+ (Nannochloropsis oceanica)
ATGGCTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGA
CCCGTTTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCG
GCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCT
ATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGA
GGTCGCTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGT
TCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAG
GAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTC
CCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCG
AATACGACGCGGGCGTTCTTAAGGTAAAGAGGATGAGAGGGAAGAAGGCA
GAGAGGGAGGGAGGGAAGAAGGGAGAGAGACAGGATGAAGCCTTTGATTC
TCACACCACTTTCGAATTCTTTCCTCCCATTCCCTCTTTCCCCCCCTCTA
GATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCAAGGCCATTCGTG
TGGAGTAGAGAAGAGAATGAGAGAAGAGAGAGAGAGAGAGGGGAGAGAGA
GAAAGAGAGAGGGAGAGGGAGAGGGCGCAGGGGGAAGGGAGGAGAAAAAT
CTTCGAGTTCCCAGTCCAGAGAGTGTGCAGTGTAA
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Synonyms
Publications