NO18G01680.1, NO18G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01680.1
Unique NameNO18G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1545
Alignment locationchr18:536450..538573 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:536450..538573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01680NO18G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01680.1NO18G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01680.1.cds1NO18G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01680.1.cds2NO18G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01680.1 ID=NO18G01680.1|Name=NO18G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp
ATGAATTCCTTCGCCAGAACCAGCCCCTCACTTGTCATCTGCGTTGCCCC
CCACGGAGCTGGCGGCCGCTGGCGCGACCCGCACCTCGTGTCCGCTCCCT
CTTCCTTCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCT
CTTCACAATAGCACCGGTCAAGTGGCGGGGTGGAGCTTGCCAGTGCAACA
TCAGCACCAGCACCAACACCGGCAGTGGGAGGAGGTGGAGGAGGAGGGGG
AGGAAGAAGAGGGAAAAGAACCCGGGCTGCGGAAGCAGCAGCAGCCGCCC
GGATGCGGCATGGCAGTCGCAGAAGCACCAGCCCGGGCAGCTGCAGGAGG
AGGAGGAGGGGGAAGGGATAGCAGGATGGATACAGGAGGGGATTCTGGAA
GGGTAGGATTGGGAGGAGTCGGGGCGGCCGAAGCGGGAACAGGAGGAGGA
GGAGAGGGAACGAGAGGAATACCTACTTTGCTCTCTTTACCCGGAGAAAA
TGCAACACGAGCACTAGAAATCATTGCTAGAATTCGTGCGGCACTTGCAA
GAGGAAGGGAGAAGGGAAAGAGAAAGATAGTGAGGGCGCTCCGACGAGGA
GGAAGAGGGGGAGGGGAAGGAGGGGGAGGACGAGGGGAAGGACGAGGGGA
AAGAGGGGCAGGAGGACGAGGGGAAAAAGGGGCAGGAGGACGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAGGAGGAAGAA
GAGGTAGAGGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGA
GGAAGAAAAAGACGAACAAAAAGAAGAAGGAGGAGAGGAAGAAGAGGAAG
AAGAAGACGAACAAGAAAAAGAAGGAGGAGAGGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGG
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGGGGAGGAGGAGGAG
GGGGAGGAGGAGGAAGACGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGA
AGGGGAGGAGGAGGAGGAGGCGGTGGAAGCAGAGGAGGAGGGGGGGGGAA
TGAGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGAGG
GGGCGGAGGCGGTGGAAGCAGAGGAGGCGGAGGCGGAGGCGGAGGAGGCG
GAGGAGGACGAGGACGAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCGA
GGACTTTGTTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGACGGCAA
TGGGGCACGCAACATCCTGCGGGTGTACAGGAGTATGGTCCGTGGGGAAG
CTCGTCTCCATGATCTTCGGTTTGGTCAACCGCGGCAAGATATGCGGACA
CTCTATGTGTAGCGTTCCCGCTGACCTCCTCTTTTATCCTCCTCCCCCTT
CTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGATCGAAAAA
CCTGTCAAAGTCGCTAGAAAAACTCGGACAAGAAATAAGGGGTGA
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protein sequence of NO18G01680.1

>NO18G01680.1-protein ID=NO18G01680.1-protein|Name=NO18G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MNSFARTSPSLVICVAPHGAGGRWRDPHLVSAPSSFTADASSGPSTTTTA
LHNSTGQVAGWSLPVQHQHQHQHRQWEEVEEEGEEEEGKEPGLRKQQQPP
GCGMAVAEAPARAAAGGGGGGRDSRMDTGGDSGRVGLGGVGAAEAGTGGG
GEGTRGIPTLLSLPGENATRALEIIARIRAALARGREKGKRKIVRALRRG
GRGGGEGGGGRGEGRGERGAGGRGEKGAGGRGGGGGGGGGGGGGGEEEEE
EVEEEEEEEEEEEEEEEEEKDEQKEEGGEEEEEEEDEQEKEGGEEEEEEE
EEEEEEEEEEEEEEEEGEEEEEEEEEEGGGGGGGGGGGRRGGRRGGGGRG
RGGGGGGGGSRGGGGGNEEEEEKGEEEEGKGEEGAEAVEAEEAEAEAEEA
EEDEDEAEEEVMGGPSEDFVGVTPVNSSCLGTAMGHATSCGCTGVWSVGK
LVSMIFGLVNRGKICGHSMCSVPADLLFYPPPPSPPGPVWAVRGLCLIEK
PVKVARKTRTRNKG*
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mRNA from alignment at chr18:536450..538573+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01680.1 ID=NO18G01680.1|Name=NO18G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp|location=Sequence derived from alignment at chr18:536450..538573+ (Nannochloropsis oceanica)
ATGAATTCCTTCGCCAGAACCAGCCCCTCACTTGTCATCTGCGTTGCCCC
CCACGGAGCTGGCGGCCGCTGGCGCGACCCGCACCTCGTGTCCGCTCCCT
CTTCCTTCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCT
CTTCACAATAGCACCGGTGCTTCCTCTCTTCCACCATCGCCCTCCCTGAT
GCTGGGCGTGGATAGCACGATTTCTCTTATGAAATTTATTACGTGCAACT
CCTCTCAAGGGAGCATGACACGCATGACGGAGCAGAACACTTCATGATAT
CCATTGTCAAACATATTCCTGGGATTGCAAGTCAGGAGAAGAGGGTAGAG
GCTTTATCAAGACAATTACAAAAACGCTCTTTCTTCCCGCGTCCACGAAA
ATGGTCATGCTCCCTTTACATACAATACCGCAATAAGGATTGTTACTCTT
TCTAGAGCTTAAATTATTTTTATGGCAGTATATGTGGTTTATTTGTTTGT
GGCAAAGGTTTGTCCACAAAAACCTCCTAACCCCCAAATGGTGCTCCTCT
TGTCTTGGCGTCCTGGTTCTCGACGTTCATGGTTTTATTTTCAATTTAAA
AATCAAGATAGAAATAATATGAGGCGACGACCACCTGGGAAGAAATTACT
TGGGAACGCCAAATGCACAACACGGAGGAAAAAGACACATTAAGTCACGT
AGTGAAATATGTAGACCTGATTCTTCTTTATCTTTTGTGCGACAGGTCAA
GTGGCGGGGTGGAGCTTGCCAGTGCAACATCAGCACCAGCACCAACACCG
GCAGTGGGAGGAGGTGGAGGAGGAGGGGGAGGAAGAAGAGGGAAAAGAAC
CCGGGCTGCGGAAGCAGCAGCAGCCGCCCGGATGCGGCATGGCAGTCGCA
GAAGCACCAGCCCGGGCAGCTGCAGGAGGAGGAGGAGGGGGAAGGGATAG
CAGGATGGATACAGGAGGGGATTCTGGAAGGGTAGGATTGGGAGGAGTCG
GGGCGGCCGAAGCGGGAACAGGAGGAGGAGGAGAGGGAACGAGAGGAATA
CCTACTTTGCTCTCTTTACCCGGAGAAAATGCAACACGAGCACTAGAAAT
CATTGCTAGAATTCGTGCGGCACTTGCAAGAGGAAGGGAGAAGGGAAAGA
GAAAGATAGTGAGGGCGCTCCGACGAGGAGGAAGAGGGGGAGGGGAAGGA
GGGGGAGGACGAGGGGAAGGACGAGGGGAAAGAGGGGCAGGAGGACGAGG
GGAAAAAGGGGCAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGAAGAGGAGGAAGAAGAGGTAGAGGAAGAAGAGGAA
GAAGAAGAGGAAGAGGAAGAGGAAGAAGAGGAAGAAAAAGACGAACAAAA
AGAAGAAGGAGGAGAGGAAGAAGAGGAAGAAGAAGACGAACAAGAAAAAG
AAGGAGGAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGGAGGGGGAGGAGGAGGAGGGGGAGGAGGAGGAAGACGAG
GAGGGAGACGAGGAGGGGGTGGAAGGGGAAGGGGAGGAGGAGGAGGAGGC
GGTGGAAGCAGAGGAGGAGGGGGGGGGAATGAGGAGGAGGAGGAGAAGGG
GGAGGAGGAGGAAGGGAAAGGGGAGGAGGGGGCGGAGGCGGTGGAAGCAG
AGGAGGCGGAGGCGGAGGCGGAGGAGGCGGAGGAGGACGAGGACGAGGCA
GAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTTTGTTGGTGTGACACC
TGTGAACAGTTCGTGTCTCGGGACGGCAATGGGGCACGCAACATCCTGCG
GGTGTACAGGAGTATGGTCCGTGGGGAAGCTCGTCTCCATGATCTTCGGT
TTGGTCAACCGCGGCAAGATATGCGGACACTCTATGTGTAGCGTTCCCGC
TGACCTCCTCTTTTATCCTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGG
CCGTCCGGGGACTTTGCCTGATCGAAAAACCTGTCAAAGTCGCTAGAAAA
ACTCGGACAAGAAATAAGGGGTGA
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Coding sequence (CDS) from alignment at chr18:536450..538573+

>NO18G01680.1 ID=NO18G01680.1|Name=NO18G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1545bp|location=Sequence derived from alignment at chr18:536450..538573+ (Nannochloropsis oceanica)
ATGAATTCCTTCGCCAGAACCAGCCCCTCACTTGTCATCTGCGTTGCCCC
CCACGGAGCTGGCGGCCGCTGGCGCGACCCGCACCTCGTGTCCGCTCCCT
CTTCCTTCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCT
CTTCACAATAGCACCGGTCAAGTGGCGGGGTGGAGCTTGCCAGTGCAACA
TCAGCACCAGCACCAACACCGGCAGTGGGAGGAGGTGGAGGAGGAGGGGG
AGGAAGAAGAGGGAAAAGAACCCGGGCTGCGGAAGCAGCAGCAGCCGCCC
GGATGCGGCATGGCAGTCGCAGAAGCACCAGCCCGGGCAGCTGCAGGAGG
AGGAGGAGGGGGAAGGGATAGCAGGATGGATACAGGAGGGGATTCTGGAA
GGGTAGGATTGGGAGGAGTCGGGGCGGCCGAAGCGGGAACAGGAGGAGGA
GGAGAGGGAACGAGAGGAATACCTACTTTGCTCTCTTTACCCGGAGAAAA
TGCAACACGAGCACTAGAAATCATTGCTAGAATTCGTGCGGCACTTGCAA
GAGGAAGGGAGAAGGGAAAGAGAAAGATAGTGAGGGCGCTCCGACGAGGA
GGAAGAGGGGGAGGGGAAGGAGGGGGAGGACGAGGGGAAGGACGAGGGGA
AAGAGGGGCAGGAGGACGAGGGGAAAAAGGGGCAGGAGGACGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAGGAGGAAGAA
GAGGTAGAGGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGA
GGAAGAAAAAGACGAACAAAAAGAAGAAGGAGGAGAGGAAGAAGAGGAAG
AAGAAGACGAACAAGAAAAAGAAGGAGGAGAGGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGG
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGGGGAGGAGGAGGAG
GGGGAGGAGGAGGAAGACGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGA
AGGGGAGGAGGAGGAGGAGGCGGTGGAAGCAGAGGAGGAGGGGGGGGGAA
TGAGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGAGG
GGGCGGAGGCGGTGGAAGCAGAGGAGGCGGAGGCGGAGGCGGAGGAGGCG
GAGGAGGACGAGGACGAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCGA
GGACTTTGTTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGACGGCAA
TGGGGCACGCAACATCCTGCGGGTGTACAGGAGTATGGTCCGTGGGGAAG
CTCGTCTCCATGATCTTCGGTTTGGTCAACCGCGGCAAGATATGCGGACA
CTCTATGTGTAGCGTTCCCGCTGACCTCCTCTTTTATCCTCCTCCCCCTT
CTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGATCGAAAAA
CCTGTCAAAGTCGCTAGAAAAACTCGGACAAGAAATAAGGGGTGA
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Synonyms
Publications