NO18G01600.1, NO18G01600.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01600.1
Unique Name	NO18G01600.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1833
Alignment location	chr18:514981..516813 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:514981..516813 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO18G01600.1 vs.
Match: EWM23366.1 (dynamin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 743.4 bits (1918), Expect = 5.500e-211
Identity = 392/590 (66.44%), Postives = 470/590 (79.66%), Query Frame = 0

Query:    2 ASVLSAETKGAVSLRRLSWGSQSGKDAFDTSGRERKGSVDAAMGWELDVLEAPLQAKTDFIDDLSILWPLNKQVKAPGIIVMGAHGAGKSSILHALTGMPFPHSSASDSTRRPIKMQISSDPTTEATYALVSTVDPACSPDKTSTQRVSKLEDLSRVLAKLNGDTERRIGEEERGQAIYVKVVRPSGTAYTVVDLPGVDEKDPESVRVAEEFMRDEPNSLILVVLPLVDVFERAFPMALAKRVDPESRRTIGVVTKTDLVQKEMEAVEKLQMTSHTGVSLPLGYIAVRLANEKEKHKTRKQLLEKEHALFTTNPLLAGLRPERWGSVTLKKLIVDYQCNAIGHLVPDVCRRLHAELRELEKEEEEEAAA---EPEGKKGMGGKLLSDHQEFFRKLCTDANSLGFEIGELALSSDTRKDRQLNLGARLTGAIKKHEEEARRALPAAVAGKVGPWLNPSEGEVEG-TTTEPRVYVSRETMSHDLFRKSVREVCGPVLRAYATALLGEATLQLKEVTHVLVQEKFQEFPWLVESVKHEINLLLQKKKGEAERVLGRIVASEMNWCFLNEADLNAVEREVALNMAGKSGGGWGL 588
            A+  + E+K A  +RRLSW S          G + K SV++ + WELDVLEAPL+ KTD IDDLSILWPLN+Q+KAPGI+V+GA GAGKSS+L  LTGMPF + + SDST+RPIKM I++DPTT+ TY LVSTVDP CSP+  +T+ V KLE+LSR+LA LN + E     E R Q IYVKVVRPSG AY+V+DLPG++E+DPESVR  E+ +  +P+ +ILVVLPL D+F+RAFP+ALAKRVDPE RRTIGVVTKTDLVQK+M+AVEK+QMTS  GV+LPLGYIAVR A EKEK+++R+Q+L++E A FT+NPLLAGLRPERWGS TLK+L+VD Q NAIG  +P V R LH EL+EL+ EEE+ A A   +  G+     K LSDHQ+FF KLC DAN+LGFEIGELALSS TR++R LNLGARL  AI  HE EARRALPA+VA KVG WL     +VEG  ++EPR+YVSRETMSHD+FRKS+REVCGPVL  YATALL E   QL+EVTHVLVQEKF  FPWLV+S+KHE+NLLL KKK + E+VL RIV SEMNWCFL+EADLNAVEREVALNMAGKS GG G+
Sbjct:   50 AATGAGESKTAKLVRRLSWSSLK-------DGAKLKKSVESLVDWELDVLEAPLKVKTDLIDDLSILWPLNQQIKAPGIVVIGAQGAGKSSVLQLLTGMPFIYCTGSDSTKRPIKMNITTDPTTDETYTLVSTVDPECSPEDGNTKHVKKLEELSRLLAHLNENPEHS-EVEARKQPIYVKVVRPSGAAYSVMDLPGINEEDPESVRFTEDILHQDPSCVILVVLPLTDIFDRAFPVALAKRVDPEGRRTIGVVTKTDLVQKDMDAVEKVQMTSQPGVNLPLGYIAVRSAAEKEKNESRRQILQREQAFFTSNPLLAGLRPERWGSTTLKRLVVDCQSNAIGQSIPKVTRLLHKELQELDNEEEKAAEALGWKDRGQSQGRAKPLSDHQDFFTKLCLDANTLGFEIGELALSSSTRQERHLNLGARLAAAITFHENEARRALPASVAEKVGSWL-----DVEGFASSEPRIYVSRETMSHDVFRKSIREVCGPVLMHYATALLTETGQQLEEVTHVLVQEKFTGFPWLVQSLKHEVNLLLGKKKVDTEKVLQRIVTSEMNWCFLSEADLNAVEREVALNMAGKSSGGLGM 626

The following BLAST results are available for this feature:

BLAST of NO18G01600.1 vs.

BLAST of NO18G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23366.1	5.500e-211	66.44	dynamin-like protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01600	NO18G01600	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01600.1	NO18G01600.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01600.1.cds1	NO18G01600.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:514981..516813-
coding sequence from alignment at chr18:514981..516813-

mRNA sequence

>NO18G01600.1 ID=NO18G01600.1|Name=NO18G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp
ATGGCATCGGTACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCG
GCTTTCCTGGGGCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGC
GCGAACGTAAGGGCTCCGTCGACGCGGCAATGGGATGGGAACTTGACGTA
CTCGAGGCCCCCCTCCAGGCCAAGACAGACTTCATCGACGACCTCTCCAT
CCTCTGGCCTCTTAACAAACAAGTCAAAGCCCCGGGAATCATCGTCATGG
GTGCCCACGGTGCCGGCAAATCTTCGATCCTGCATGCCTTGACAGGGATG
CCTTTCCCGCATTCCTCTGCCTCGGACAGCACTAGGCGCCCCATCAAGAT
GCAGATCTCCTCCGATCCCACCACCGAGGCAACCTACGCCCTGGTCAGCA
CCGTCGATCCTGCTTGCTCCCCGGACAAGACCAGCACCCAGCGTGTCTCT
AAGCTGGAGGACCTGTCCCGTGTGCTCGCCAAATTGAACGGAGACACAGA
GAGGCGGATTGGGGAAGAGGAGAGGGGACAGGCGATCTATGTCAAGGTGG
TACGGCCTTCGGGAACGGCGTATACGGTGGTGGATTTGCCGGGAGTGGAT
GAAAAAGATCCGGAATCCGTCCGTGTGGCGGAGGAGTTTATGCGTGATGA
ACCCAACAGCCTGATTTTGGTGGTACTGCCCTTGGTAGATGTGTTTGAGC
GGGCGTTTCCCATGGCGTTGGCCAAGAGGGTTGACCCGGAGAGTCGGCGA
ACCATCGGGGTGGTGACCAAGACAGACCTTGTTCAAAAAGAGATGGAGGC
AGTGGAGAAGCTTCAAATGACCAGCCATACAGGCGTAAGTCTTCCTTTAG
GGTATATTGCTGTGCGTTTGGCCAACGAGAAGGAGAAGCATAAGACTCGC
AAGCAATTATTGGAGAAGGAGCATGCCCTTTTCACGACCAACCCGTTGCT
GGCAGGCTTGAGGCCGGAAAGATGGGGCTCGGTGACATTGAAGAAATTAA
TTGTGGATTACCAGTGCAATGCCATCGGGCACCTTGTTCCGGATGTCTGT
CGTCGGCTGCATGCAGAGCTACGGGAGCTGGAGAAAGAGGAGGAGGAGGA
GGCTGCGGCAGAGCCGGAAGGGAAGAAGGGGATGGGAGGAAAGCTGCTGT
CCGACCATCAAGAATTCTTCAGGAAGCTTTGCACGGATGCGAATAGCCTG
GGTTTTGAAATTGGGGAGTTGGCTCTGAGCAGTGACACCCGGAAGGATCG
ACAGCTCAACTTAGGTGCCCGTCTGACAGGTGCGATCAAAAAGCATGAAG
AGGAGGCGCGGAGAGCCTTGCCGGCAGCTGTTGCAGGCAAGGTGGGCCCT
TGGTTGAACCCGTCAGAGGGGGAGGTAGAAGGGACGACTACTGAGCCGCG
GGTATATGTGAGCCGGGAGACGATGTCGCATGATTTGTTTCGGAAGTCGG
TGAGGGAGGTGTGCGGCCCTGTGCTGCGTGCGTATGCCACTGCCCTGCTT
GGAGAGGCGACCCTGCAGTTGAAGGAAGTGACGCATGTGCTGGTGCAGGA
GAAATTCCAGGAGTTCCCGTGGTTGGTCGAGAGTGTGAAGCATGAGATTA
ACTTGCTCTTGCAGAAGAAGAAAGGGGAAGCAGAGAGGGTGCTTGGTCGG
ATTGTGGCCTCCGAGATGAACTGGTGCTTCTTGAATGAGGCGGATCTGAA
TGCCGTCGAACGAGAAGTAGCTCTTAATATGGCGGGTAAGTCCGGGGGGG
GCTGGGGTTTGGAAAGGTGGCGCCGTCGGGAGAGCAGCCAAATCAACAGT
TGCACTGGTCGGCGGAGATGTCGGAGGTGCTGA

protein sequence of NO18G01600.1

>NO18G01600.1-protein ID=NO18G01600.1-protein|Name=NO18G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=611bp
MASVLSAETKGAVSLRRLSWGSQSGKDAFDTSGRERKGSVDAAMGWELDV
LEAPLQAKTDFIDDLSILWPLNKQVKAPGIIVMGAHGAGKSSILHALTGM
PFPHSSASDSTRRPIKMQISSDPTTEATYALVSTVDPACSPDKTSTQRVS
KLEDLSRVLAKLNGDTERRIGEEERGQAIYVKVVRPSGTAYTVVDLPGVD
EKDPESVRVAEEFMRDEPNSLILVVLPLVDVFERAFPMALAKRVDPESRR
TIGVVTKTDLVQKEMEAVEKLQMTSHTGVSLPLGYIAVRLANEKEKHKTR
KQLLEKEHALFTTNPLLAGLRPERWGSVTLKKLIVDYQCNAIGHLVPDVC
RRLHAELRELEKEEEEEAAAEPEGKKGMGGKLLSDHQEFFRKLCTDANSL
GFEIGELALSSDTRKDRQLNLGARLTGAIKKHEEEARRALPAAVAGKVGP
WLNPSEGEVEGTTTEPRVYVSRETMSHDLFRKSVREVCGPVLRAYATALL
GEATLQLKEVTHVLVQEKFQEFPWLVESVKHEINLLLQKKKGEAERVLGR
IVASEMNWCFLNEADLNAVEREVALNMAGKSGGGWGLERWRRRESSQINS
CTGRRRCRRC*

mRNA from alignment at chr18:514981..516813-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01600.1 ID=NO18G01600.1|Name=NO18G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at chr18:514981..516813- (Nannochloropsis oceanica)
ATGGCATCGGTACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCG
GCTTTCCTGGGGCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGC
GCGAACGTAAGGGCTCCGTCGACGCGGCAATGGGATGGGAACTTGACGTA
CTCGAGGCCCCCCTCCAGGCCAAGACAGACTTCATCGACGACCTCTCCAT
CCTCTGGCCTCTTAACAAACAAGTCAAAGCCCCGGGAATCATCGTCATGG
GTGCCCACGGTGCCGGCAAATCTTCGATCCTGCATGCCTTGACAGGGATG
CCTTTCCCGCATTCCTCTGCCTCGGACAGCACTAGGCGCCCCATCAAGAT
GCAGATCTCCTCCGATCCCACCACCGAGGCAACCTACGCCCTGGTCAGCA
CCGTCGATCCTGCTTGCTCCCCGGACAAGACCAGCACCCAGCGTGTCTCT
AAGCTGGAGGACCTGTCCCGTGTGCTCGCCAAATTGAACGGAGACACAGA
GAGGCGGATTGGGGAAGAGGAGAGGGGACAGGCGATCTATGTCAAGGTGG
TACGGCCTTCGGGAACGGCGTATACGGTGGTGGATTTGCCGGGAGTGGAT
GAAAAAGATCCGGAATCCGTCCGTGTGGCGGAGGAGTTTATGCGTGATGA
ACCCAACAGCCTGATTTTGGTGGTACTGCCCTTGGTAGATGTGTTTGAGC
GGGCGTTTCCCATGGCGTTGGCCAAGAGGGTTGACCCGGAGAGTCGGCGA
ACCATCGGGGTGGTGACCAAGACAGACCTTGTTCAAAAAGAGATGGAGGC
AGTGGAGAAGCTTCAAATGACCAGCCATACAGGCGTAAGTCTTCCTTTAG
GGTATATTGCTGTGCGTTTGGCCAACGAGAAGGAGAAGCATAAGACTCGC
AAGCAATTATTGGAGAAGGAGCATGCCCTTTTCACGACCAACCCGTTGCT
GGCAGGCTTGAGGCCGGAAAGATGGGGCTCGGTGACATTGAAGAAATTAA
TTGTGGATTACCAGTGCAATGCCATCGGGCACCTTGTTCCGGATGTCTGT
CGTCGGCTGCATGCAGAGCTACGGGAGCTGGAGAAAGAGGAGGAGGAGGA
GGCTGCGGCAGAGCCGGAAGGGAAGAAGGGGATGGGAGGAAAGCTGCTGT
CCGACCATCAAGAATTCTTCAGGAAGCTTTGCACGGATGCGAATAGCCTG
GGTTTTGAAATTGGGGAGTTGGCTCTGAGCAGTGACACCCGGAAGGATCG
ACAGCTCAACTTAGGTGCCCGTCTGACAGGTGCGATCAAAAAGCATGAAG
AGGAGGCGCGGAGAGCCTTGCCGGCAGCTGTTGCAGGCAAGGTGGGCCCT
TGGTTGAACCCGTCAGAGGGGGAGGTAGAAGGGACGACTACTGAGCCGCG
GGTATATGTGAGCCGGGAGACGATGTCGCATGATTTGTTTCGGAAGTCGG
TGAGGGAGGTGTGCGGCCCTGTGCTGCGTGCGTATGCCACTGCCCTGCTT
GGAGAGGCGACCCTGCAGTTGAAGGAAGTGACGCATGTGCTGGTGCAGGA
GAAATTCCAGGAGTTCCCGTGGTTGGTCGAGAGTGTGAAGCATGAGATTA
ACTTGCTCTTGCAGAAGAAGAAAGGGGAAGCAGAGAGGGTGCTTGGTCGG
ATTGTGGCCTCCGAGATGAACTGGTGCTTCTTGAATGAGGCGGATCTGAA
TGCCGTCGAACGAGAAGTAGCTCTTAATATGGCGGGTAAGTCCGGGGGGG
GCTGGGGTTTGGAAAGGTGGCGCCGTCGGGAGAGCAGCCAAATCAACAGT
TGCACTGGTCGGCGGAGATGTCGGAGGTGCTGA

Coding sequence (CDS) from alignment at chr18:514981..516813-

>NO18G01600.1 ID=NO18G01600.1|Name=NO18G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1833bp|location=Sequence derived from alignment at chr18:514981..516813- (Nannochloropsis oceanica)
ATGGCATCGGTACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCG
GCTTTCCTGGGGCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGC
GCGAACGTAAGGGCTCCGTCGACGCGGCAATGGGATGGGAACTTGACGTA
CTCGAGGCCCCCCTCCAGGCCAAGACAGACTTCATCGACGACCTCTCCAT
CCTCTGGCCTCTTAACAAACAAGTCAAAGCCCCGGGAATCATCGTCATGG
GTGCCCACGGTGCCGGCAAATCTTCGATCCTGCATGCCTTGACAGGGATG
CCTTTCCCGCATTCCTCTGCCTCGGACAGCACTAGGCGCCCCATCAAGAT
GCAGATCTCCTCCGATCCCACCACCGAGGCAACCTACGCCCTGGTCAGCA
CCGTCGATCCTGCTTGCTCCCCGGACAAGACCAGCACCCAGCGTGTCTCT
AAGCTGGAGGACCTGTCCCGTGTGCTCGCCAAATTGAACGGAGACACAGA
GAGGCGGATTGGGGAAGAGGAGAGGGGACAGGCGATCTATGTCAAGGTGG
TACGGCCTTCGGGAACGGCGTATACGGTGGTGGATTTGCCGGGAGTGGAT
GAAAAAGATCCGGAATCCGTCCGTGTGGCGGAGGAGTTTATGCGTGATGA
ACCCAACAGCCTGATTTTGGTGGTACTGCCCTTGGTAGATGTGTTTGAGC
GGGCGTTTCCCATGGCGTTGGCCAAGAGGGTTGACCCGGAGAGTCGGCGA
ACCATCGGGGTGGTGACCAAGACAGACCTTGTTCAAAAAGAGATGGAGGC
AGTGGAGAAGCTTCAAATGACCAGCCATACAGGCGTAAGTCTTCCTTTAG
GGTATATTGCTGTGCGTTTGGCCAACGAGAAGGAGAAGCATAAGACTCGC
AAGCAATTATTGGAGAAGGAGCATGCCCTTTTCACGACCAACCCGTTGCT
GGCAGGCTTGAGGCCGGAAAGATGGGGCTCGGTGACATTGAAGAAATTAA
TTGTGGATTACCAGTGCAATGCCATCGGGCACCTTGTTCCGGATGTCTGT
CGTCGGCTGCATGCAGAGCTACGGGAGCTGGAGAAAGAGGAGGAGGAGGA
GGCTGCGGCAGAGCCGGAAGGGAAGAAGGGGATGGGAGGAAAGCTGCTGT
CCGACCATCAAGAATTCTTCAGGAAGCTTTGCACGGATGCGAATAGCCTG
GGTTTTGAAATTGGGGAGTTGGCTCTGAGCAGTGACACCCGGAAGGATCG
ACAGCTCAACTTAGGTGCCCGTCTGACAGGTGCGATCAAAAAGCATGAAG
AGGAGGCGCGGAGAGCCTTGCCGGCAGCTGTTGCAGGCAAGGTGGGCCCT
TGGTTGAACCCGTCAGAGGGGGAGGTAGAAGGGACGACTACTGAGCCGCG
GGTATATGTGAGCCGGGAGACGATGTCGCATGATTTGTTTCGGAAGTCGG
TGAGGGAGGTGTGCGGCCCTGTGCTGCGTGCGTATGCCACTGCCCTGCTT
GGAGAGGCGACCCTGCAGTTGAAGGAAGTGACGCATGTGCTGGTGCAGGA
GAAATTCCAGGAGTTCCCGTGGTTGGTCGAGAGTGTGAAGCATGAGATTA
ACTTGCTCTTGCAGAAGAAGAAAGGGGAAGCAGAGAGGGTGCTTGGTCGG
ATTGTGGCCTCCGAGATGAACTGGTGCTTCTTGAATGAGGCGGATCTGAA
TGCCGTCGAACGAGAAGTAGCTCTTAATATGGCGGGTAAGTCCGGGGGGG
GCTGGGGTTTGGAAAGGTGGCGCCGTCGGGAGAGCAGCCAAATCAACAGT
TGCACTGGTCGGCGGAGATGTCGGAGGTGCTGA

Synonyms

Publications