NO18G01460.1, NO18G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01460.1
Unique NameNO18G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2341
Alignment locationchr18:481933..484881 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:481933..484881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO18G01460.1 vs.
Match: EWM23351.1 (asparagine synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1053.9 bits (2724), Expect = 1.800e-304
Identity = 500/585 (85.47%), Postives = 548/585 (93.68%), Query Frame = 0
Query:    1 MCGILAIFRSNLSEADLRKILIQNALKLRHRGPDWSGYKVYGNNAIAHERLAIIDPDSGSQPLVSPDGNVIVAANGEIYNYKELYEEMGGTDFYTPKTGSDCEVVIPLYLKHGRNFPNLLRGMFSFVLYDKQEDSFFVLRDHMGITPLYVGYGADGSVWFASEMKALTDVVARVEVFPPGHAYDSKAGGEGGNGGFVQWYDPVWYNPGYLPTEKVELLNVRNSFEMAVKRRMMSDVPWGVLLSGGLDSSLVASIASRLSKRDPHCEWPRLHSFSVGLENSPDLAAASEVAQFVGTVHHSYVFTIQEGLDAVREVIYHLETYDVTTIRAATPMFLMSRKIKARGVKMVLSGEGADEIFGGYLYFHKAPNSKELHMETVDKLKGLYQFDCLRANKATSAWGVEVRVPFLDRDFLDVAMTLDPQDKMIIKGGGAGASGGEGQGGRRIEKWILRKAFDDPADPYLPNKILWRQKEQFSDGVGYGWIDALRDHANAEVSDQQFAAAGNRFPHNAPQTKEAYFYRSIFEQYYASPSAAATVPGGPTIACSTPRAMAWDASFRGRADPSGRAVAAVHESAYVEGFTPQENGK 586
            MCGILAIFRS+LSEADLRKI+IQNALKLRHRGPDWSGYKVYG+NAIAHERLAIIDPDSGSQPLVSPDGN+IVAANGEIYNYKELYEE+GG DFY PKTGSDCEV+IPLYLKHGR+FP  LRGMFSFVLYD+++DSFFVLRDHMGITPLY GYGADGS+WFASEMKALTDVVARV+VFPPGHAYDS+  G+G   GFVQWY+PVWY+  YLPTE+VELLN+RN+FEMAVKRRMMSDVPWGVLLSGGLDSSLVASIASRLS+RDP+ EWPRLHSFS+GLENSPDLAAA+EVA+FVGTVHHSYVFT+QEG+DAVREVIYHLETYDVTT+RAATPMFLMSRKIKARGVKMVLSGEGADEIFGGYLYFHKAP+SKE H ETVDKL+GL+Q+DCLRANKATSAWGVEVRVPFLD+DFLDVAMT++P+DKMI+K G           GRR+EKWILRKAFDDPADPYLP KILWRQKEQFSDGVGYGWIDALRDHANA+VSD+ F+AA NRFP+N P TKEAY+YR IF++++ SPSAAATVPGGP+IACSTPRAM WDASFRGRADPSGRAVAAVHESAYVEGFTPQ  G+
Sbjct:    1 MCGILAIFRSSLSEADLRKIMIQNALKLRHRGPDWSGYKVYGSNAIAHERLAIIDPDSGSQPLVSPDGNIIVAANGEIYNYKELYEELGGIDFYPPKTGSDCEVIIPLYLKHGRDFPRFLRGMFSFVLYDRRDDSFFVLRDHMGITPLYAGYGADGSIWFASEMKALTDVVARVDVFPPGHAYDSELEGKG---GFVQWYNPVWYDSTYLPTERVELLNIRNAFEMAVKRRMMSDVPWGVLLSGGLDSSLVASIASRLSRRDPNNEWPRLHSFSIGLENSPDLAAAAEVAKFVGTVHHSYVFTVQEGMDAVREVIYHLETYDVTTVRAATPMFLMSRKIKARGVKMVLSGEGADEIFGGYLYFHKAPDSKEFHAETVDKLRGLFQYDCLRANKATSAWGVEVRVPFLDQDFLDVAMTINPEDKMIVKDG----------EGRRMEKWILRKAFDDPADPYLPAKILWRQKEQFSDGVGYGWIDALRDHANADVSDKVFSAAENRFPYNTPLTKEAYYYRDIFDRFFPSPSAAATVPGGPSIACSTPRAMEWDASFRGRADPSGRAVAAVHESAYVEGFTPQAEGE 572          
The following BLAST results are available for this feature:
BLAST of NO18G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23351.11.800e-30485.47asparagine synthetase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01460NO18G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01460.1NO18G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01460.1.cds1NO18G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01460.1.cds2NO18G01460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01460.1.cds3NO18G01460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01460.1.cds4NO18G01460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01460.1.cds5NO18G01460.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01460.1 ID=NO18G01460.1|Name=NO18G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2341bp
ACAGGAAAGGCTTCCCCACCCTGTTGTAAGACCGGTTGTCATCATTTCCT
CCCTCCCGATCCGGTGTCTGGAATCCTCGTACGCCAAGTGAGGCACCTCC
TTCGCCATTCCTTCATCAAACCGGACTCGCAGCAGCACCAGCAGCTCGGG
GTCACATCAAGTAATCATACAGTTAGAACACTATGTGCGGGATTCTAGCC
ATCTTTCGCTCTAATCTCTCTGAGGCAGATCTTCGCAAAATTCTGATCCA
GAATGCCCTCAAGCTGCGACATCGTGGCCCAGATTGGAGCGGCTACAAGG
TGTACGGCAATAACGCCATTGCCCACGAGCGCCTAGCTATCATCGACCCC
GACTCAGGCTCGCAGCCTTTGGTGAGCCCAGACGGCAACGTGATCGTGGC
TGCCAACGGCGAGATCTACAATTACAAGGAACTGTACGAAGAAATGGGAG
GCACCGATTTTTATACTCCCAAGACCGGCTCAGACTGCGAGGTGGTCATT
CCCCTCTACCTCAAGCACGGCCGCAACTTCCCCAATCTTCTTCGAGGGAT
GTTTTCATTCGTCCTCTACGATAAGCAGGAGGACTCGTTTTTTGTGCTGA
GAGACCATATGGGGATCACCCCTCTTTATGTCGGATATGGCGCTGATGGC
TCGGTGTGGTTCGCGAGTGAGATGAAGGCCCTAACGGACGTTGTGGCGCG
GGTGGAAGTTTTCCCACCGGGTCACGCCTATGACAGCAAGGCAGGTGGGG
AGGGAGGGAATGGGGGGTTTGTGCAGTGGTACGACCCTGTGTGGTACAAC
CCCGGGTACTTGCCGACGGAAAAGGTGGAGCTGTTAAACGTGAGGAACTC
GTTCGAGATGGCAGTGAAGAGGAGGATGATGTCGGACGTCCCCTGGGGGG
TCCTCCTGAGTGGGGGCTTGGACTCGTCGTTGGTGGCCTCGATTGCGAGC
AGGCTGAGTAAGAGGGACCCGCACTGCGAGTGGCCGCGGCTGCACTCGTT
CTCCGTGGGGCTGGAGAACTCTCCGGACTTGGCCGCTGCGAGCGAGGTGG
CACAGTTTGTGGGAACAGTGCACCACTCGTATGTGTTTACGATCCAGGAG
GGGCTGGATGCGGTCAGGGAGGTCATATACCACTTGGAGACGTATGATGT
GACCACGATTCGGGCGGCCACGCCCATGTTCTTGATGAGCCGGAAGATCA
AGGCGAGGGGGGTGAAGATGGTCTTGTCCGGGGAGGGGGCGGATGAGATT
TTTGGAGGGTACCTATATTTCCATAAGGCGCCCAACAGCAAGGAACTTCA
CATGGAGACAGTGGACAAGCTCAAGGGCCTTTACCAGTTCGACTGCCTGC
GCGCCAACAAGGCCACCTCTGCGTGGGGGGTCGAAGTTCGCGTCCCCTTC
CTCGACCGTGACTTCCTCGACGTGGCCATGACGCTTGACCCTCAGGACAA
AATGATCATCAAGGGAGGAGGAGCAGGTGCCAGTGGAGGAGAGGGCCAGG
GGGGTCGACGGATCGAAAAATGGATCTTGAGGAAGGCGTTCGATGATCCT
GCCGACCCGTACTTGCCCAACAAAATCCTGTGGCGGCAGAAGGAGCAGTT
TTCGGATGGGGTGGGGTATGGGTGGATTGATGCCTTGAGGGACCACGCGA
ATGCTGAAGTGTCTGACCAACAGTTTGCTGCGGCTGGGAATAGGTTCCCC
CACAACGCCCCCCAGACGAAGGAGGCGTACTTTTATCGCTCTATTTTCGA
GCAATACTACGCGAGTCCATCGGCTGCCGCCACCGTTCCGGGGGGGCCCA
CCATTGCGTGTTCAACGCCCAGGGCGATGGCGTGGGATGCTTCCTTCAGA
GGAAGGGCGGACCCGAGTGGACGCGCGGTGGCTGCCGTTCACGAGAGTGC
GTACGTGGAGGGCTTCACGCCGCAGGAAAATGGAAAAGTGGTGGGAAAGT
AAAGGGTGGAGGGAAAGCAGGGTGGTGGGGGAGCTTGACTGTGGCGAATG
AGAGGGGGGGAAAGCAAGCAGTGCCTGCAGTGCACGAGGAGACGAGAAGA
ATGGGCGCAGTCTGCGGATCGGGCTAGGTGACTGGCTGGGCGCTTAGATA
AGAGAGTGCAGGAGTAGAGGCGTGGCGTTCCGATGCTGGATGGGTTGTTT
TGCCCGTGTGCGTCGCGGTGTGTTTGTTTGTTTCGGGTGGATGCGTGAAG
AGAAGGTAGGGAGCCAGATATATTTTTTGATGGGGAGGGATGGAGAATAA
TTATGACAGGAGGAGAAGAAGAAGTAAGGAGAGAAGGAGTGAGCAAGAAA
AATTCCGAGGAGAGATGAAGAAAAAAGATGTTAGAAAGGAA
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protein sequence of NO18G01460.1

>NO18G01460.1-protein ID=NO18G01460.1-protein|Name=NO18G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MCGILAIFRSNLSEADLRKILIQNALKLRHRGPDWSGYKVYGNNAIAHER
LAIIDPDSGSQPLVSPDGNVIVAANGEIYNYKELYEEMGGTDFYTPKTGS
DCEVVIPLYLKHGRNFPNLLRGMFSFVLYDKQEDSFFVLRDHMGITPLYV
GYGADGSVWFASEMKALTDVVARVEVFPPGHAYDSKAGGEGGNGGFVQWY
DPVWYNPGYLPTEKVELLNVRNSFEMAVKRRMMSDVPWGVLLSGGLDSSL
VASIASRLSKRDPHCEWPRLHSFSVGLENSPDLAAASEVAQFVGTVHHSY
VFTIQEGLDAVREVIYHLETYDVTTIRAATPMFLMSRKIKARGVKMVLSG
EGADEIFGGYLYFHKAPNSKELHMETVDKLKGLYQFDCLRANKATSAWGV
EVRVPFLDRDFLDVAMTLDPQDKMIIKGGGAGASGGEGQGGRRIEKWILR
KAFDDPADPYLPNKILWRQKEQFSDGVGYGWIDALRDHANAEVSDQQFAA
AGNRFPHNAPQTKEAYFYRSIFEQYYASPSAAATVPGGPTIACSTPRAMA
WDASFRGRADPSGRAVAAVHESAYVEGFTPQENGKVVGK*
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mRNA from alignment at chr18:481933..484881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01460.1 ID=NO18G01460.1|Name=NO18G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2949bp|location=Sequence derived from alignment at chr18:481933..484881+ (Nannochloropsis oceanica)
ACAGGAAAGGCTTCCCCACCCTGTTGTAAGACCGGTTGTCATCATTTCCT CCCTCCCGATCCGGTGTCTGGAATCCTCGTACGCCAAGTGAGGCACCTCC TTCGCCATTCCTTCATCAAACCGGACTCGCAGCAGCACCAGCAGCTCGGG GTCACATCAAGTAATCATACAGTTAGAACACTATGTGCGGGATTCTAGCC ATCTTTCGCTCTAATCTCTCTGAGGCAGATCTTCGCAAAATTCTGATCCA GAATGCCCTCAAGTAAGAGTGTAGTCTGCGTGTATTGGGGGGGATATGGG AGGGAAGTCGTGCGAGACACCATCTCTTTTGCATGCGCACTCTCCAAACA TGCATGTTGTTATTATGATAGTCCAGAGCAGGGCGATTGAGGAATACGAA AGAGAGAGAATTTAACATTTGCTGCCTCCTGTCTGCTTTTCCCTCCCACA AAACACACAGGCTGCGACATCGTGGCCCAGATTGGAGCGGCTACAAGGTA CAACACCGCTCTCTCCATCCCTCACTTTTTGCTTTTTCCATCGCTTCCTT TCTGCCTTGCCCACGTTTTCACCACCTTTCCTCATACATTCCAAAATCCT CACCCATAGGTGTACGGCAATAACGCCATTGCCCACGAGCGCCTAGCTAT CATCGACCCCGACTCAGGCTCGCAGCCTTTGGTGAGCCCAGACGGCAACG GTACGTACACCTTGTGACTGCATCTCTCCAGCATTTAAGCGAATGGGTAA TGGGTGTACACTGAGTCCATCGCGTCCCTGTTTCCTAACCTCTCCCTTTC CCCCCCTTCCATCCTTCCCCTCCTCTCCCTCAGTGATCGTGGCTGCCAAC GGCGAGATCTACAATTACAAGGAACTGTACGAAGAAATGGGAGGCACCGA TTTTTATACTCCCAAGACCGGCTCAGACTGCGAGGTGGTCATTCCCCTCT ACCTCAAGCACGGCCGCAACTTCCCCAATCTTCTTCGAGGGATGTTTTCA TTCGTCCTCTACGATAAGCAGGAGGACTCGTTTTTTGTGCTGAGAGACCA TATGGGGATCACCCCTCTTTATGTCGGATATGGCGCTGATGGCTCGGTGT GGTTCGCGAGTGAGATGAAGGCCCTAACGGACGTTGTGGCGCGGGTGGAA GTTTTCCCACCGGGTCACGCCTATGACAGCAAGGCAGGTGGGGAGGGAGG GAATGGGGGGTTTGTGCAGTGGTACGACCCTGTGTGGTACAACCCCGGGT ACTTGCCGACGGAAAAGGTGGAGCTGTTAAACGTGAGGAACTCGTTCGAG ATGGCAGTGAAGAGGAGGATGATGTCGGACGTCCCCTGGGGGGTCCTCCT GAGTGGGGGCTTGGACTCGTCGTTGGTGGCCTCGATTGCGAGCAGGCTGA GTAAGAGGGACCCGCACTGCGAGTGGCCGCGGCTGCACTCGTTCTCCGTG GGGCTGGAGAACTCTCCGGACTTGGCCGCTGCGAGCGAGGTGGCACAGTT TGTGGGAACAGTGCACCACTCGTATGTGTTTACGATCCAGGAGGGGCTGG ATGCGGTCAGGGAGGTCATATACCACTTGGAGACGTATGATGTGACCACG ATTCGGGCGGCCACGCCCATGTTCTTGATGAGCCGGAAGATCAAGGCGAG GGGGGTGAAGATGGTCTTGTCCGGGGAGGGGGCGGATGAGATTTTTGGAG GGTACCTATATTTCCATAAGGCGCCCAACAGCAAGGTAAGTTTCTCTCTC TCTCATCCCTGACCCTCCCTCCCTCCCATCTGCCATGTTTGTGATTAGTC GGAAGATTAAGGCCTAGGAAGTCGACCAATTGGACGGCCTGCGCGCCAAC AAGGTTTCGCTCTGGCACCTGACCCTCCCTCATTCCCTCCCTCTCTGTAG GAACTTCACATGGAGACAGTGGACAAGCTCAAGGGCCTTTACCAGTTCGA CTGCCTGCGCGCCAACAAGGCCACCTCTGCGTGGGGGGTCGAAGTTCGCG TCCCCTTCCTCGACCGTGACTTCCTCGACGTGGCCATGACGCTTGACCCT CAGGACAAAATGATCATCAAGGGAGGAGGAGCAGGTGCCAGTGGAGGAGA GGGCCAGGGGGGTCGACGGATCGAAAAATGGATCTTGAGGAAGGCGTTCG ATGATCCTGCCGACCCGTACTTGCCCAACAAAATCCTGTGGCGGCAGAAG GAGCAGTTTTCGGATGGGGTGGGGTATGGGTGGATTGATGCCTTGAGGGA CCACGCGAATGCTGAAGTGTCTGACCAACAGTTTGCTGCGGCTGGGAATA GGTTCCCCCACAACGCCCCCCAGACGAAGGAGGCGTACTTTTATCGCTCT ATTTTCGAGCAATACTACGCGAGTCCATCGGCTGCCGCCACCGTTCCGGG GGGGCCCACCATTGCGTGTTCAACGCCCAGGGCGATGGCGTGGGATGCTT CCTTCAGAGGAAGGGCGGACCCGAGTGGACGCGCGGTGGCTGCCGTTCAC GAGAGTGCGTACGTGGAGGGCTTCACGCCGCAGGAAAATGGAAAAGTGGT GGGAAAGTAAAGGGTGGAGGGAAAGCAGGGTGGTGGGGGAGCTTGACTGT GGCGAATGAGAGGGGGGGAAAGCAAGCAGTGCCTGCAGTGCACGAGGAGA CGAGAAGAATGGGCGCAGTCTGCGGATCGGGCTAGGTGACTGGCTGGGCG CTTAGATAAGAGAGTGCAGGAGTAGAGGCGTGGCGTTCCGATGCTGGATG GGTTGTTTTGCCCGTGTGCGTCGCGGTGTGTTTGTTTGTTTCGGGTGGAT GCGTGAAGAGAAGGTAGGGAGCCAGATATATTTTTTGATGGGGAGGGATG GAGAATAATTATGACAGGAGGAGAAGAAGAAGTAAGGAGAGAAGGAGTGA GCAAGAAAAATTCCGAGGAGAGATGAAGAAAAAAGATGTTAGAAAGGAA
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Coding sequence (CDS) from alignment at chr18:481933..484881+

>NO18G01460.1 ID=NO18G01460.1|Name=NO18G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr18:481933..484881+ (Nannochloropsis oceanica)
ATGTGCGGGATTCTAGCCATCTTTCGCTCTAATCTCTCTGAGGCAGATCT
TCGCAAAATTCTGATCCAGAATGCCCTCAAGCTGCGACATCGTGGCCCAG
ATTGGAGCGGCTACAAGGTGTACGGCAATAACGCCATTGCCCACGAGCGC
CTAGCTATCATCGACCCCGACTCAGGCTCGCAGCCTTTGGTGAGCCCAGA
CGGCAACGTGATCGTGGCTGCCAACGGCGAGATCTACAATTACAAGGAAC
TGTACGAAGAAATGGGAGGCACCGATTTTTATACTCCCAAGACCGGCTCA
GACTGCGAGGTGGTCATTCCCCTCTACCTCAAGCACGGCCGCAACTTCCC
CAATCTTCTTCGAGGGATGTTTTCATTCGTCCTCTACGATAAGCAGGAGG
ACTCGTTTTTTGTGCTGAGAGACCATATGGGGATCACCCCTCTTTATGTC
GGATATGGCGCTGATGGCTCGGTGTGGTTCGCGAGTGAGATGAAGGCCCT
AACGGACGTTGTGGCGCGGGTGGAAGTTTTCCCACCGGGTCACGCCTATG
ACAGCAAGGCAGGTGGGGAGGGAGGGAATGGGGGGTTTGTGCAGTGGTAC
GACCCTGTGTGGTACAACCCCGGGTACTTGCCGACGGAAAAGGTGGAGCT
GTTAAACGTGAGGAACTCGTTCGAGATGGCAGTGAAGAGGAGGATGATGT
CGGACGTCCCCTGGGGGGTCCTCCTGAGTGGGGGCTTGGACTCGTCGTTG
GTGGCCTCGATTGCGAGCAGGCTGAGTAAGAGGGACCCGCACTGCGAGTG
GCCGCGGCTGCACTCGTTCTCCGTGGGGCTGGAGAACTCTCCGGACTTGG
CCGCTGCGAGCGAGGTGGCACAGTTTGTGGGAACAGTGCACCACTCGTAT
GTGTTTACGATCCAGGAGGGGCTGGATGCGGTCAGGGAGGTCATATACCA
CTTGGAGACGTATGATGTGACCACGATTCGGGCGGCCACGCCCATGTTCT
TGATGAGCCGGAAGATCAAGGCGAGGGGGGTGAAGATGGTCTTGTCCGGG
GAGGGGGCGGATGAGATTTTTGGAGGGTACCTATATTTCCATAAGGCGCC
CAACAGCAAGGAACTTCACATGGAGACAGTGGACAAGCTCAAGGGCCTTT
ACCAGTTCGACTGCCTGCGCGCCAACAAGGCCACCTCTGCGTGGGGGGTC
GAAGTTCGCGTCCCCTTCCTCGACCGTGACTTCCTCGACGTGGCCATGAC
GCTTGACCCTCAGGACAAAATGATCATCAAGGGAGGAGGAGCAGGTGCCA
GTGGAGGAGAGGGCCAGGGGGGTCGACGGATCGAAAAATGGATCTTGAGG
AAGGCGTTCGATGATCCTGCCGACCCGTACTTGCCCAACAAAATCCTGTG
GCGGCAGAAGGAGCAGTTTTCGGATGGGGTGGGGTATGGGTGGATTGATG
CCTTGAGGGACCACGCGAATGCTGAAGTGTCTGACCAACAGTTTGCTGCG
GCTGGGAATAGGTTCCCCCACAACGCCCCCCAGACGAAGGAGGCGTACTT
TTATCGCTCTATTTTCGAGCAATACTACGCGAGTCCATCGGCTGCCGCCA
CCGTTCCGGGGGGGCCCACCATTGCGTGTTCAACGCCCAGGGCGATGGCG
TGGGATGCTTCCTTCAGAGGAAGGGCGGACCCGAGTGGACGCGCGGTGGC
TGCCGTTCACGAGAGTGCGTACGTGGAGGGCTTCACGCCGCAGGAAAATG
GAAAAGTGGTGGGAAAGTAA
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Synonyms
Publications