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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:481933..484881 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01460.1 vs.
Match: EWM23351.1 (asparagine synthetase [Nannochloropsis gaditana]) HSP 1 Score: 1053.9 bits (2724), Expect = 1.800e-304 Identity = 500/585 (85.47%), Postives = 548/585 (93.68%), Query Frame = 0
Query: 1 MCGILAIFRSNLSEADLRKILIQNALKLRHRGPDWSGYKVYGNNAIAHERLAIIDPDSGSQPLVSPDGNVIVAANGEIYNYKELYEEMGGTDFYTPKTGSDCEVVIPLYLKHGRNFPNLLRGMFSFVLYDKQEDSFFVLRDHMGITPLYVGYGADGSVWFASEMKALTDVVARVEVFPPGHAYDSKAGGEGGNGGFVQWYDPVWYNPGYLPTEKVELLNVRNSFEMAVKRRMMSDVPWGVLLSGGLDSSLVASIASRLSKRDPHCEWPRLHSFSVGLENSPDLAAASEVAQFVGTVHHSYVFTIQEGLDAVREVIYHLETYDVTTIRAATPMFLMSRKIKARGVKMVLSGEGADEIFGGYLYFHKAPNSKELHMETVDKLKGLYQFDCLRANKATSAWGVEVRVPFLDRDFLDVAMTLDPQDKMIIKGGGAGASGGEGQGGRRIEKWILRKAFDDPADPYLPNKILWRQKEQFSDGVGYGWIDALRDHANAEVSDQQFAAAGNRFPHNAPQTKEAYFYRSIFEQYYASPSAAATVPGGPTIACSTPRAMAWDASFRGRADPSGRAVAAVHESAYVEGFTPQENGK 586
MCGILAIFRS+LSEADLRKI+IQNALKLRHRGPDWSGYKVYG+NAIAHERLAIIDPDSGSQPLVSPDGN+IVAANGEIYNYKELYEE+GG DFY PKTGSDCEV+IPLYLKHGR+FP LRGMFSFVLYD+++DSFFVLRDHMGITPLY GYGADGS+WFASEMKALTDVVARV+VFPPGHAYDS+ G+G GFVQWY+PVWY+ YLPTE+VELLN+RN+FEMAVKRRMMSDVPWGVLLSGGLDSSLVASIASRLS+RDP+ EWPRLHSFS+GLENSPDLAAA+EVA+FVGTVHHSYVFT+QEG+DAVREVIYHLETYDVTT+RAATPMFLMSRKIKARGVKMVLSGEGADEIFGGYLYFHKAP+SKE H ETVDKL+GL+Q+DCLRANKATSAWGVEVRVPFLD+DFLDVAMT++P+DKMI+K G GRR+EKWILRKAFDDPADPYLP KILWRQKEQFSDGVGYGWIDALRDHANA+VSD+ F+AA NRFP+N P TKEAY+YR IF++++ SPSAAATVPGGP+IACSTPRAM WDASFRGRADPSGRAVAAVHESAYVEGFTPQ G+
Sbjct: 1 MCGILAIFRSSLSEADLRKIMIQNALKLRHRGPDWSGYKVYGSNAIAHERLAIIDPDSGSQPLVSPDGNIIVAANGEIYNYKELYEELGGIDFYPPKTGSDCEVIIPLYLKHGRDFPRFLRGMFSFVLYDRRDDSFFVLRDHMGITPLYAGYGADGSIWFASEMKALTDVVARVDVFPPGHAYDSELEGKG---GFVQWYNPVWYDSTYLPTERVELLNIRNAFEMAVKRRMMSDVPWGVLLSGGLDSSLVASIASRLSRRDPNNEWPRLHSFSIGLENSPDLAAAAEVAKFVGTVHHSYVFTVQEGMDAVREVIYHLETYDVTTVRAATPMFLMSRKIKARGVKMVLSGEGADEIFGGYLYFHKAPDSKEFHAETVDKLRGLFQYDCLRANKATSAWGVEVRVPFLDQDFLDVAMTINPEDKMIVKDG----------EGRRMEKWILRKAFDDPADPYLPAKILWRQKEQFSDGVGYGWIDALRDHANADVSDKVFSAAENRFPYNTPLTKEAYYYRDIFDRFFPSPSAAATVPGGPSIACSTPRAMEWDASFRGRADPSGRAVAAVHESAYVEGFTPQAEGE 572
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01460.1 ID=NO18G01460.1|Name=NO18G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2341bp ACAGGAAAGGCTTCCCCACCCTGTTGTAAGACCGGTTGTCATCATTTCCT CCCTCCCGATCCGGTGTCTGGAATCCTCGTACGCCAAGTGAGGCACCTCC TTCGCCATTCCTTCATCAAACCGGACTCGCAGCAGCACCAGCAGCTCGGG GTCACATCAAGTAATCATACAGTTAGAACACTATGTGCGGGATTCTAGCC ATCTTTCGCTCTAATCTCTCTGAGGCAGATCTTCGCAAAATTCTGATCCA GAATGCCCTCAAGCTGCGACATCGTGGCCCAGATTGGAGCGGCTACAAGG TGTACGGCAATAACGCCATTGCCCACGAGCGCCTAGCTATCATCGACCCC GACTCAGGCTCGCAGCCTTTGGTGAGCCCAGACGGCAACGTGATCGTGGC TGCCAACGGCGAGATCTACAATTACAAGGAACTGTACGAAGAAATGGGAG GCACCGATTTTTATACTCCCAAGACCGGCTCAGACTGCGAGGTGGTCATT CCCCTCTACCTCAAGCACGGCCGCAACTTCCCCAATCTTCTTCGAGGGAT GTTTTCATTCGTCCTCTACGATAAGCAGGAGGACTCGTTTTTTGTGCTGA GAGACCATATGGGGATCACCCCTCTTTATGTCGGATATGGCGCTGATGGC TCGGTGTGGTTCGCGAGTGAGATGAAGGCCCTAACGGACGTTGTGGCGCG GGTGGAAGTTTTCCCACCGGGTCACGCCTATGACAGCAAGGCAGGTGGGG AGGGAGGGAATGGGGGGTTTGTGCAGTGGTACGACCCTGTGTGGTACAAC CCCGGGTACTTGCCGACGGAAAAGGTGGAGCTGTTAAACGTGAGGAACTC GTTCGAGATGGCAGTGAAGAGGAGGATGATGTCGGACGTCCCCTGGGGGG TCCTCCTGAGTGGGGGCTTGGACTCGTCGTTGGTGGCCTCGATTGCGAGC AGGCTGAGTAAGAGGGACCCGCACTGCGAGTGGCCGCGGCTGCACTCGTT CTCCGTGGGGCTGGAGAACTCTCCGGACTTGGCCGCTGCGAGCGAGGTGG CACAGTTTGTGGGAACAGTGCACCACTCGTATGTGTTTACGATCCAGGAG GGGCTGGATGCGGTCAGGGAGGTCATATACCACTTGGAGACGTATGATGT GACCACGATTCGGGCGGCCACGCCCATGTTCTTGATGAGCCGGAAGATCA AGGCGAGGGGGGTGAAGATGGTCTTGTCCGGGGAGGGGGCGGATGAGATT TTTGGAGGGTACCTATATTTCCATAAGGCGCCCAACAGCAAGGAACTTCA CATGGAGACAGTGGACAAGCTCAAGGGCCTTTACCAGTTCGACTGCCTGC GCGCCAACAAGGCCACCTCTGCGTGGGGGGTCGAAGTTCGCGTCCCCTTC CTCGACCGTGACTTCCTCGACGTGGCCATGACGCTTGACCCTCAGGACAA AATGATCATCAAGGGAGGAGGAGCAGGTGCCAGTGGAGGAGAGGGCCAGG GGGGTCGACGGATCGAAAAATGGATCTTGAGGAAGGCGTTCGATGATCCT GCCGACCCGTACTTGCCCAACAAAATCCTGTGGCGGCAGAAGGAGCAGTT TTCGGATGGGGTGGGGTATGGGTGGATTGATGCCTTGAGGGACCACGCGA ATGCTGAAGTGTCTGACCAACAGTTTGCTGCGGCTGGGAATAGGTTCCCC CACAACGCCCCCCAGACGAAGGAGGCGTACTTTTATCGCTCTATTTTCGA GCAATACTACGCGAGTCCATCGGCTGCCGCCACCGTTCCGGGGGGGCCCA CCATTGCGTGTTCAACGCCCAGGGCGATGGCGTGGGATGCTTCCTTCAGA GGAAGGGCGGACCCGAGTGGACGCGCGGTGGCTGCCGTTCACGAGAGTGC GTACGTGGAGGGCTTCACGCCGCAGGAAAATGGAAAAGTGGTGGGAAAGT AAAGGGTGGAGGGAAAGCAGGGTGGTGGGGGAGCTTGACTGTGGCGAATG AGAGGGGGGGAAAGCAAGCAGTGCCTGCAGTGCACGAGGAGACGAGAAGA ATGGGCGCAGTCTGCGGATCGGGCTAGGTGACTGGCTGGGCGCTTAGATA AGAGAGTGCAGGAGTAGAGGCGTGGCGTTCCGATGCTGGATGGGTTGTTT TGCCCGTGTGCGTCGCGGTGTGTTTGTTTGTTTCGGGTGGATGCGTGAAG AGAAGGTAGGGAGCCAGATATATTTTTTGATGGGGAGGGATGGAGAATAA TTATGACAGGAGGAGAAGAAGAAGTAAGGAGAGAAGGAGTGAGCAAGAAA AATTCCGAGGAGAGATGAAGAAAAAAGATGTTAGAAAGGAA back to topprotein sequence of NO18G01460.1 >NO18G01460.1-protein ID=NO18G01460.1-protein|Name=NO18G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp MCGILAIFRSNLSEADLRKILIQNALKLRHRGPDWSGYKVYGNNAIAHER LAIIDPDSGSQPLVSPDGNVIVAANGEIYNYKELYEEMGGTDFYTPKTGS DCEVVIPLYLKHGRNFPNLLRGMFSFVLYDKQEDSFFVLRDHMGITPLYV GYGADGSVWFASEMKALTDVVARVEVFPPGHAYDSKAGGEGGNGGFVQWY DPVWYNPGYLPTEKVELLNVRNSFEMAVKRRMMSDVPWGVLLSGGLDSSL VASIASRLSKRDPHCEWPRLHSFSVGLENSPDLAAASEVAQFVGTVHHSY VFTIQEGLDAVREVIYHLETYDVTTIRAATPMFLMSRKIKARGVKMVLSG EGADEIFGGYLYFHKAPNSKELHMETVDKLKGLYQFDCLRANKATSAWGV EVRVPFLDRDFLDVAMTLDPQDKMIIKGGGAGASGGEGQGGRRIEKWILR KAFDDPADPYLPNKILWRQKEQFSDGVGYGWIDALRDHANAEVSDQQFAA AGNRFPHNAPQTKEAYFYRSIFEQYYASPSAAATVPGGPTIACSTPRAMA WDASFRGRADPSGRAVAAVHESAYVEGFTPQENGKVVGK* back to topmRNA from alignment at chr18:481933..484881+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01460.1 ID=NO18G01460.1|Name=NO18G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2949bp|location=Sequence derived from alignment at chr18:481933..484881+ (Nannochloropsis oceanica) ACAGGAAAGGCTTCCCCACCCTGTTGTAAGACCGGTTGTCATCATTTCCT
CCCTCCCGATCCGGTGTCTGGAATCCTCGTACGCCAAGTGAGGCACCTCC
TTCGCCATTCCTTCATCAAACCGGACTCGCAGCAGCACCAGCAGCTCGGG
GTCACATCAAGTAATCATACAGTTAGAACACTATGTGCGGGATTCTAGCC
ATCTTTCGCTCTAATCTCTCTGAGGCAGATCTTCGCAAAATTCTGATCCA
GAATGCCCTCAAGTAAGAGTGTAGTCTGCGTGTATTGGGGGGGATATGGG
AGGGAAGTCGTGCGAGACACCATCTCTTTTGCATGCGCACTCTCCAAACA
TGCATGTTGTTATTATGATAGTCCAGAGCAGGGCGATTGAGGAATACGAA
AGAGAGAGAATTTAACATTTGCTGCCTCCTGTCTGCTTTTCCCTCCCACA
AAACACACAGGCTGCGACATCGTGGCCCAGATTGGAGCGGCTACAAGGTA
CAACACCGCTCTCTCCATCCCTCACTTTTTGCTTTTTCCATCGCTTCCTT
TCTGCCTTGCCCACGTTTTCACCACCTTTCCTCATACATTCCAAAATCCT
CACCCATAGGTGTACGGCAATAACGCCATTGCCCACGAGCGCCTAGCTAT
CATCGACCCCGACTCAGGCTCGCAGCCTTTGGTGAGCCCAGACGGCAACG
GTACGTACACCTTGTGACTGCATCTCTCCAGCATTTAAGCGAATGGGTAA
TGGGTGTACACTGAGTCCATCGCGTCCCTGTTTCCTAACCTCTCCCTTTC
CCCCCCTTCCATCCTTCCCCTCCTCTCCCTCAGTGATCGTGGCTGCCAAC
GGCGAGATCTACAATTACAAGGAACTGTACGAAGAAATGGGAGGCACCGA
TTTTTATACTCCCAAGACCGGCTCAGACTGCGAGGTGGTCATTCCCCTCT
ACCTCAAGCACGGCCGCAACTTCCCCAATCTTCTTCGAGGGATGTTTTCA
TTCGTCCTCTACGATAAGCAGGAGGACTCGTTTTTTGTGCTGAGAGACCA
TATGGGGATCACCCCTCTTTATGTCGGATATGGCGCTGATGGCTCGGTGT
GGTTCGCGAGTGAGATGAAGGCCCTAACGGACGTTGTGGCGCGGGTGGAA
GTTTTCCCACCGGGTCACGCCTATGACAGCAAGGCAGGTGGGGAGGGAGG
GAATGGGGGGTTTGTGCAGTGGTACGACCCTGTGTGGTACAACCCCGGGT
ACTTGCCGACGGAAAAGGTGGAGCTGTTAAACGTGAGGAACTCGTTCGAG
ATGGCAGTGAAGAGGAGGATGATGTCGGACGTCCCCTGGGGGGTCCTCCT
GAGTGGGGGCTTGGACTCGTCGTTGGTGGCCTCGATTGCGAGCAGGCTGA
GTAAGAGGGACCCGCACTGCGAGTGGCCGCGGCTGCACTCGTTCTCCGTG
GGGCTGGAGAACTCTCCGGACTTGGCCGCTGCGAGCGAGGTGGCACAGTT
TGTGGGAACAGTGCACCACTCGTATGTGTTTACGATCCAGGAGGGGCTGG
ATGCGGTCAGGGAGGTCATATACCACTTGGAGACGTATGATGTGACCACG
ATTCGGGCGGCCACGCCCATGTTCTTGATGAGCCGGAAGATCAAGGCGAG
GGGGGTGAAGATGGTCTTGTCCGGGGAGGGGGCGGATGAGATTTTTGGAG
GGTACCTATATTTCCATAAGGCGCCCAACAGCAAGGTAAGTTTCTCTCTC
TCTCATCCCTGACCCTCCCTCCCTCCCATCTGCCATGTTTGTGATTAGTC
GGAAGATTAAGGCCTAGGAAGTCGACCAATTGGACGGCCTGCGCGCCAAC
AAGGTTTCGCTCTGGCACCTGACCCTCCCTCATTCCCTCCCTCTCTGTAG
GAACTTCACATGGAGACAGTGGACAAGCTCAAGGGCCTTTACCAGTTCGA
CTGCCTGCGCGCCAACAAGGCCACCTCTGCGTGGGGGGTCGAAGTTCGCG
TCCCCTTCCTCGACCGTGACTTCCTCGACGTGGCCATGACGCTTGACCCT
CAGGACAAAATGATCATCAAGGGAGGAGGAGCAGGTGCCAGTGGAGGAGA
GGGCCAGGGGGGTCGACGGATCGAAAAATGGATCTTGAGGAAGGCGTTCG
ATGATCCTGCCGACCCGTACTTGCCCAACAAAATCCTGTGGCGGCAGAAG
GAGCAGTTTTCGGATGGGGTGGGGTATGGGTGGATTGATGCCTTGAGGGA
CCACGCGAATGCTGAAGTGTCTGACCAACAGTTTGCTGCGGCTGGGAATA
GGTTCCCCCACAACGCCCCCCAGACGAAGGAGGCGTACTTTTATCGCTCT
ATTTTCGAGCAATACTACGCGAGTCCATCGGCTGCCGCCACCGTTCCGGG
GGGGCCCACCATTGCGTGTTCAACGCCCAGGGCGATGGCGTGGGATGCTT
CCTTCAGAGGAAGGGCGGACCCGAGTGGACGCGCGGTGGCTGCCGTTCAC
GAGAGTGCGTACGTGGAGGGCTTCACGCCGCAGGAAAATGGAAAAGTGGT
GGGAAAGTAAAGGGTGGAGGGAAAGCAGGGTGGTGGGGGAGCTTGACTGT
GGCGAATGAGAGGGGGGGAAAGCAAGCAGTGCCTGCAGTGCACGAGGAGA
CGAGAAGAATGGGCGCAGTCTGCGGATCGGGCTAGGTGACTGGCTGGGCG
CTTAGATAAGAGAGTGCAGGAGTAGAGGCGTGGCGTTCCGATGCTGGATG
GGTTGTTTTGCCCGTGTGCGTCGCGGTGTGTTTGTTTGTTTCGGGTGGAT
GCGTGAAGAGAAGGTAGGGAGCCAGATATATTTTTTGATGGGGAGGGATG
GAGAATAATTATGACAGGAGGAGAAGAAGAAGTAAGGAGAGAAGGAGTGA
GCAAGAAAAATTCCGAGGAGAGATGAAGAAAAAAGATGTTAGAAAGGAA back to topCoding sequence (CDS) from alignment at chr18:481933..484881+ >NO18G01460.1 ID=NO18G01460.1|Name=NO18G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr18:481933..484881+ (Nannochloropsis oceanica) ATGTGCGGGATTCTAGCCATCTTTCGCTCTAATCTCTCTGAGGCAGATCT TCGCAAAATTCTGATCCAGAATGCCCTCAAGCTGCGACATCGTGGCCCAG ATTGGAGCGGCTACAAGGTGTACGGCAATAACGCCATTGCCCACGAGCGC CTAGCTATCATCGACCCCGACTCAGGCTCGCAGCCTTTGGTGAGCCCAGA CGGCAACGTGATCGTGGCTGCCAACGGCGAGATCTACAATTACAAGGAAC TGTACGAAGAAATGGGAGGCACCGATTTTTATACTCCCAAGACCGGCTCA GACTGCGAGGTGGTCATTCCCCTCTACCTCAAGCACGGCCGCAACTTCCC CAATCTTCTTCGAGGGATGTTTTCATTCGTCCTCTACGATAAGCAGGAGG ACTCGTTTTTTGTGCTGAGAGACCATATGGGGATCACCCCTCTTTATGTC GGATATGGCGCTGATGGCTCGGTGTGGTTCGCGAGTGAGATGAAGGCCCT AACGGACGTTGTGGCGCGGGTGGAAGTTTTCCCACCGGGTCACGCCTATG ACAGCAAGGCAGGTGGGGAGGGAGGGAATGGGGGGTTTGTGCAGTGGTAC GACCCTGTGTGGTACAACCCCGGGTACTTGCCGACGGAAAAGGTGGAGCT GTTAAACGTGAGGAACTCGTTCGAGATGGCAGTGAAGAGGAGGATGATGT CGGACGTCCCCTGGGGGGTCCTCCTGAGTGGGGGCTTGGACTCGTCGTTG GTGGCCTCGATTGCGAGCAGGCTGAGTAAGAGGGACCCGCACTGCGAGTG GCCGCGGCTGCACTCGTTCTCCGTGGGGCTGGAGAACTCTCCGGACTTGG CCGCTGCGAGCGAGGTGGCACAGTTTGTGGGAACAGTGCACCACTCGTAT GTGTTTACGATCCAGGAGGGGCTGGATGCGGTCAGGGAGGTCATATACCA CTTGGAGACGTATGATGTGACCACGATTCGGGCGGCCACGCCCATGTTCT TGATGAGCCGGAAGATCAAGGCGAGGGGGGTGAAGATGGTCTTGTCCGGG GAGGGGGCGGATGAGATTTTTGGAGGGTACCTATATTTCCATAAGGCGCC CAACAGCAAGGAACTTCACATGGAGACAGTGGACAAGCTCAAGGGCCTTT ACCAGTTCGACTGCCTGCGCGCCAACAAGGCCACCTCTGCGTGGGGGGTC GAAGTTCGCGTCCCCTTCCTCGACCGTGACTTCCTCGACGTGGCCATGAC GCTTGACCCTCAGGACAAAATGATCATCAAGGGAGGAGGAGCAGGTGCCA GTGGAGGAGAGGGCCAGGGGGGTCGACGGATCGAAAAATGGATCTTGAGG AAGGCGTTCGATGATCCTGCCGACCCGTACTTGCCCAACAAAATCCTGTG GCGGCAGAAGGAGCAGTTTTCGGATGGGGTGGGGTATGGGTGGATTGATG CCTTGAGGGACCACGCGAATGCTGAAGTGTCTGACCAACAGTTTGCTGCG GCTGGGAATAGGTTCCCCCACAACGCCCCCCAGACGAAGGAGGCGTACTT TTATCGCTCTATTTTCGAGCAATACTACGCGAGTCCATCGGCTGCCGCCA CCGTTCCGGGGGGGCCCACCATTGCGTGTTCAACGCCCAGGGCGATGGCG TGGGATGCTTCCTTCAGAGGAAGGGCGGACCCGAGTGGACGCGCGGTGGC TGCCGTTCACGAGAGTGCGTACGTGGAGGGCTTCACGCCGCAGGAAAATG GAAAAGTGGTGGGAAAGTAA back to top
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