NO17G02940.3, NO17G02940.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G02940.3
Unique Name	NO17G02940.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2571
Alignment location	chr17:862621..866632 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:862621..866632 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO17G02940.3 vs.
Match: EWM24107.1 (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 302.4 bits (773), Expect = 1.300e-78
Identity = 155/255 (60.78%), Postives = 191/255 (74.90%), Query Frame = 0

Query:    1 MARLFRSAVALAIFAFAGLATAESPMRRRQQMT---TGALKDM----LPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGNPLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNYAANRRFRF 249
            MAR+ RS   +A+  FA LA AESPMRR Q +T   +GA KD+    LPAYKPDAELTMMQD W+NGLD+M +F ++F S GMKA+LD+ E QH IME LPLLAAFDGFK+ITGRRLD  GT AGF AG+N+++  LPDMLKTMKDP+ISTR LSELLA+DA+  SE F  AS+GD  AM  V  A+N+KL+PG+NT  LK VS  +PL  +  N E+MRLI+ DP+ + AL    P ++D FVK+YAA+RRFRF
Sbjct:    1 MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRF 255

The following BLAST results are available for this feature:

BLAST of NO17G02940.3 vs.

BLAST of NO17G02940.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24107.1	1.300e-78	60.78	hypothetical protein Naga_100286g4 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02940	NO17G02940	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02940.3	NO17G02940.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02940.3.cds1	NO17G02940.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02940.3.cds2	NO17G02940.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02940.3.cds3	NO17G02940.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02940.3.cds4	NO17G02940.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02940.3.cds5	NO17G02940.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02940.3.cds6	NO17G02940.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02940.3.cds7	NO17G02940.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02940.3.cds8	NO17G02940.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02940.3.cds9	NO17G02940.3.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:862621..866632+
coding sequence from alignment at chr17:862621..866632+

mRNA sequence

>NO17G02940.3 ID=NO17G02940.3|Name=NO17G02940.3|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp
CCCGAGCCACACCCAAACGACCGCCTTTGGCAGTTATTACTCCCAACGCC
TCTCACGAGCACCGTACTGCTCCCAAAACTCGTTCGTGCTCTACTCCTCC
CGAAATAAAAAACACCCATAAAAATGGGGCTTTATGTCTTGATCCTCTTC
CCCCTGCCTCGCTTTGTCATACCTATTTTTGGGGGTCCATGCCCAGTTCT
TCTTGGTTGCATTGACAAGAAACGCCTGGTTTGGCAGGGCTTGCTGAGAA
CATGAAGTTATGGGCCTACCTAGGCATTCTTCTTTGCGCATCCGGCGCGC
TTTCTCAGGGGCGGTCATTGTTGGGCGCGAGATTACTGCTCGCGGAGAGA
GGCTCGCGGAGTTGTGCTTGGGCTTGGCCTCTTCCTTCATTTTAGAGGCT
CCTCGCAGCTATCAATCCAAAGATGGTATTTGTCTCTCGAGCATCCTCCC
CACTCCCCTTTGCTTGCTCCCTCTCTCCAAAGGTGCAGCACACTGATCGG
AGGGCTTAGCTCACCAAGCGATTGGTAGCTGTTGACACTGCCTACCTATC
CGACTGTGTTTTGGAGGAAAATTAGCACTCATAGAGCCGCCAGGGAGATT
AGGGCGGCTCCACACAACGTAAGCTATCTGTCACAAGTGTCTTGCCCTTA
CTGGCAAGCCGTCGTGATAGCAGCCATGTTTCTTGTCAATGAATGGGCTC
TGGGGAGGCTAGGCCATACACACTCAGACACACATCCTCCCATACCGGGT
CTCACCCAACTCCCTTTCGTTCCACCCCTCCGCAGCAAGACACGCTACCC
ATCATCCACAAGCTACATATACAATGGCTCGTCTGTTTCGTTCCGCGGTC
GCTCTGGCCATATTCGCCTTTGCTGGCCTCGCCACTGCCGAGAGCCCCAT
GCGCCGCAGGCAGCAAATGACCACCGGTGCCCTGAAGGACATGCTCCCCG
CCTACAAGCCCGACGCCGAGCTCACCATGATGCAGGACGCCTGGCGCAAC
GGCCTGGATGTCATGTCCGTGTTCACGAGCAACTTCCAGTCGGAGGGGAT
GAAGGCCGTCCTCGACAACGCCGAGATCCAGCACACGATCATGGAGAAGC
TGCCCCTCCTCGCGGCCTTCGACGGTTTCAAGCAGATCACCGGCCGCCGC
CTTGATGCCGAAGGGACCAAGGCGGGCTTTGCCGCTGGCATCAATGCGAT
GATGACTGCCTTGCCTGACATGCTCAAGACCATGAAGGACCCCACCATCT
CCACCCGCGTCTTGTCCGAGTTGCTGGCCGACGACGCCGACGGCTTCAGT
GAGGTCTTCAACGACGCCTCCTCGGGCGACAAGGAGGCCATGGCCAAGGT
CGAGGCTGCGGTCAACGAGAAGCTCTTCCCCGGCATTAACACCAGCGCGC
TCAAGGCCGTGTCCGAAGGCAACCCCCTCAAGTCCCTTCTCGACAACAAG
GAGGTCATGCGCCTCATCGACTCTGATCCAGTCACGTCCATGGCCCTCCG
CGCGAACTCCCCCGAAGAGATGGATGAATTTGTAAAGAATTACGCCGCCA
ACCGCCGCTTCCGATTCTAAACTCGTGAACGAGGGCCACGAGAATGGGAA
GAGATGGAGGGAGAGATGGCTCTGTGATGGAGCGTGCCGATGGACGGCAC
CCACTCCTGTGTATTTTATGAGGGCAAGCAGGAAGGGAGGGAGGGAAAGA
CAAGACCATGTACCATCATTTCCTAACGTTTTGATTTGTACGTTCGTGGA
TGGAGGGTGCTCGGACGGGGGGAGGGAGGATGAGGCGGAGGGCTGGCTAA
TTGTGACGTGTCACTCACTACTCAAACAGTACGATTACGATGGAAAGGCG
ACCGGACGGAGGGAGGGAGGGACGGAGAGAAGAGGAGCTATGGACCATGA
CAGCGGGAAGGATGGAGGGAGGGACGGAGGATTGCGTCTCTAGTAGGCGC
ATCAACGCGTGCTCTCCCTTTTCCTCCTCTGCCTCTTTCCGTTTCAGAAT
CTCTTGTCCTGCGCTTCTTTATGTGATAAATAAATTTCGATACAATTACG
TACATACGTCTATATATTTATAATGTGCGCTCAGGGAGGGAGGGAGGGAG
AAAGTGTCCGCTGGCCTCTTGCTCGGTCTCCTTGTGAGACGGGAGGGAGG
TCGGCGTGTCGGCCACTGGCGAAGGCGAAAGAGGGAGGAGTAAGACGGAA
AGGATCAAAGAAACAAGGGATAGTGAGAGTACACACACACACGCGCGCTG
ATTTCTATAGTGGCTCTGGCTGCGAGAAAACGACACGGTCTGTCGATCTT
TGATTTGTCACAGCCGTTGTTGCTGCTGCGACTTTTTCCTAATTCCTTCC
GGAACGGCCTCTGGGGCCTGTTGGGGTTTCTTTTTCTTTAAGGGGGAGGC
TCCTTCTCAATAAGGCTTAAAGGCGTGAATGGAAAATATCTTCCTTCTTC
CCACCTCCTCACTCTTCCCTCCATCCTCCTACTCTCCCTCCCCCTCTGCT
GTGGGGGATACGAAATGTTACCTTGACTCAATGGAATGTGTAGCGCTTGT
TGATCGCCTCAGTCACGTCCC

protein sequence of NO17G02940.3

>NO17G02940.3-protein ID=NO17G02940.3-protein|Name=NO17G02940.3|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MARLFRSAVALAIFAFAGLATAESPMRRRQQMTTGALKDMLPAYKPDAEL
TMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFD
GFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSEL
LADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGN
PLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNYAANRRFRF*

mRNA from alignment at chr17:862621..866632+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G02940.3 ID=NO17G02940.3|Name=NO17G02940.3|organism=Nannochloropsis oceanica|type=mRNA|length=4012bp|location=Sequence derived from alignment at chr17:862621..866632+ (Nannochloropsis oceanica)
CCCGAGCCACACCCAAACGACCGCCTTTGGCAGTTATTACTCCCAACGCC
TCTCACGAGCACCGTACTGCTCCCAAAACTCGTTCGTGCTCTACTCCTCC
CGAAATAAAAAACACCCATAAAAATGGGGCTTTATGTCTTGATCCTCTTC
CCCCTGCCTCGCTTTGTCATACCTATTTTTGGGGGTCCATGCCCAGTTCT
TCTTGGTTGCATTGACAAGAAACGCCTGGTTTGGCAGGGCTTGCTGAGAA
CATGAAGTTATGGGCCTACCTAGGCATTCTTCTTTGCGCATCCGGCGCGC
TTTCTCAGGGGCGGTCATTGTTGGGCGCGAGATTACTGCTCGCGGAGAGA
GGCTCGCGGAGTTGTGCTTGGGCTTGGCCTCTTCCTTCATTTTAGAGGCT
CCTCGCAGCTATCAATCCAAAGATGGTATTTGTCTCTCGAGCATCCTCCC
CACTCCCCTTTGCTTGCTCCCTCTCTCCAAAGGTGCAGCACACTGATCGG
AGGGCTTAGCTCACCAAGCGATTGGTAGCTGTTGACACTGCCTACCTATC
CGACTGTGTTTTGGAGGAAAATTAGCACTCATAGAGCCGCCAGGGAGATT
AGGGCGGCTCCACACAACGTAAGCTATCTGTCACAAGTGTCTTGCCCTTA
CTGGCAAGCCGTCGTGATAGCAGCCATGTTTCTTGTCAATGAATGGGCTC
TGGGGAGGCTAGGCCATACACACTCAGACACACATCCTCCCATACCGGGT
CTCACCCAACTCCCTTTCGTTCCACCCCTCCGCAGCAAGACACGCTACCC
ATCATCCACAAGCTACATATACAATGGCTCGTCTGTTTCGTTCCGCGGTC
GCTCTGGCCATATTCGCCTTTGCTGGCCTCGCCACTGCCGAGAGCCCCAT
GCGCCGCAGGCAGGTAAAGAAAAAGAGGGACAAGGAGGAAGGGAATAGGA
ACGGAGGAAGATAGAAATGCATGTCATTAAAGACGATTTGTTTTGACACG
CTGGCGTCATCAGGAACTGTATTAAATCAGGCGTTATTTGGGTGAGATGC
ATATGTACACTCACCGAAATCTTCCTTCTCCCTCTCTGCCCTCCTCTTTC
CTGCCTGCTCGTTCGCTCGTCTAAGACATTCATCAAAAACGGGCTCTTCT
CTCAGGTGCCGTGCCCTAGAAGGACGGACATCCATCGCACCGACAATCCC
ATTCACTCCTCTTCCTCCGTCCCTCCCATTCTCTCTTCCATAGCAAATGA
CCACCGGTGCCCTGAAGGACATGCTCCCCGCCTACAAGCCCGACGCCGAG
CTCACCATGATGCAGGTAGGAGGATGACGTAGAAATGCAGTCGGAAGGTG
AAACGATATCCTGTCTGTGGAGAGCCCTGTCAAACATCGCCTTATTATTG
AATGAATGTAGAAAAGCTCACGCCTGTCGTTTCTCTCCACCTCCCTTCTT
TCATACGTAGGACGCCTGGCGCAACGGCCTGGATGTCATGTCCGTGTTCA
CGAGCAACTTCCAGTCGGAGGGGATGAAGGTAAGTGGAACGGAGGTGGGT
CCTCTTCTAGACCGCGCCGAGATTCGGCAACACCTCTCTCATGAAATGAC
TTCCTCCCTCCGTCGCCTTAGGCCGTCCTCGACAACGCCGAGATCCAGCA
CACGATCATGGAGAAGCTGCCCCTCCTCGCGGCCTTCGACGGTTTCAAGC
AGATCACCGGCCGCCGCCTTGATGCCGAAGGGGTAAGGAAATAGAATGAG
GGAGGAAAACGTTCTGGTCTGATTCCTTCTCAAGAAATATACATGCGTCC
AGCTTACACCTACCCTCCCTCCCATCCCTCCCTCCTCCCTCCCTCCCCTA
GACCAAGGCGGGCTTTGCCGCTGGCATCAATGCGATGATGACTGCCTTGC
CTGACATGCTCAAGACCATGAAGGACCCCACCATCTCCACCCGCGTCTTG
TCCGAGTTGCTGGCCGACGACGCCGACGGCTTCAGTGTATGGAGGGAGGG
AGGGAGGAAGGGGTGACACGAATCTTGAGAGATTTCTAGTTCTACTGGCC
GTGGCTGCCTCTCCCCTTTGCGAGAGAAGATGTTGATTTCTTGATGTTTT
GGACTCTTTGGTCTTTTCCGTAGGAGCTGGATACCACAAGTCCCTTGTAA
ATGTATGGACGCCACCCTTTTATGTGTGTGTTCATCTCTCTTTTTTATCC
TCTGCCATTCCTGCTTTTTCTCCTCACAGGAGGTCTTCAACGACGCCTCC
TCGGGCGACAAGGAGGCCATGGCCAAGGTCGAGGCTGCGGTCAACGAGAA
GCTCTTCCCCGGCATTAACACCAGCGCGCTCAAGGTAAGCAACAAAACCT
TCAGACACGGGGGAGGGAGGGAGAAAGTTGTGTCGACTCATGTTTCCAAT
ACCCGTTGAATATCGTCGAGGCCTGAGGCATGAAATGAAAGTACAGAAAG
ACCGTGTGCGCTGTGTGTATGGGGAGGCATTACCTTTATCATCACTACTC
TCGTCCTTTTTGCAATGAAGAAAATAGGATGAAGAAAGCTTGTTCTAGCT
ACCCCGTCCCTTACGCCTCTCATTCCTCCGCCTTATTCCTTCTCCCTTCC
CACCACAGGCCGTGTCCGAAGGCAACCCCCTCAAGTCCCTTCTCGACAAC
AAGGAGGTACGAGGAAGAGAGGAAGAAAAGAAGGGGAACTGGAGAAGACT
GTCTTTATTTTCCATTTAATCACTCAAAACAATCACGTGCTGATCCCTCC
CTCCCTCCCTCTTCCTCCTCCCAGGTCATGCGCCTCATCGACTCTGATCC
AGTCACGTCCATGGCCCTCCGCGCGAACTCCCCCGAAGAGATGGATGAAT
TTGTAAAGAATTACGCCGCCAACCGCCGCTTCCGATTCTGTGCGTAGTCT
TTTTTCCTGCCCACCTTCCTCCTCTCCCTCCCTTCCTTTTCTTTTCGGCT
TGTCTACCGTCGGCTCACCTGCCCTCCATGTCTTTCTCGCTCTTTCCCTC
CAACCACAGAAACTCGTGAACGAGGGCCACGAGAATGGGAAGAGATGGAG
GGAGAGATGGCTCTGTGATGGAGCGTGCCGATGGACGGCACCCACTCCTG
TGTATTTTATGAGGGCAAGCAGGAAGGGAGGGAGGGAAAGACAAGACCAT
GTACCATCATTTCCTAACGTTTTGATTTGTACGTTCGTGGATGGAGGGTG
CTCGGACGGGGGGAGGGAGGATGAGGCGGAGGGCTGGCTAATTGTGACGT
GTCACTCACTACTCAAACAGTACGATTACGATGGAAAGGCGACCGGACGG
AGGGAGGGAGGGACGGAGAGAAGAGGAGCTATGGACCATGACAGCGGGAA
GGATGGAGGGAGGGACGGAGGATTGCGTCTCTAGTAGGCGCATCAACGCG
TGCTCTCCCTTTTCCTCCTCTGCCTCTTTCCGTTTCAGAATCTCTTGTCC
TGCGCTTCTTTATGTGATAAATAAATTTCGATACAATTACGTACATACGT
CTATATATTTATAATGTGCGCTCAGGGAGGGAGGGAGGGAGAAAGTGTCC
GCTGGCCTCTTGCTCGGTCTCCTTGTGAGACGGGAGGGAGGTCGGCGTGT
CGGCCACTGGCGAAGGCGAAAGAGGGAGGAGTAAGACGGAAAGGATCAAA
GAAACAAGGGATAGTGAGAGTACACACACACACGCGCGCTGATTTCTATA
GTGGCTCTGGCTGCGAGAAAACGACACGGTCTGTCGATCTTTGATTTGTC
ACAGCCGTTGTTGCTGCTGCGACTTTTTCCTAATTCCTTCCGGAACGGCC
TCTGGGGCCTGTTGGGGTTTCTTTTTCTTTAAGGGGGAGGCTCCTTCTCA
ATAAGGCTTAAAGGCGTGAATGGAAAATATCTTCCTTCTTCCCACCTCCT
CACTCTTCCCTCCATCCTCCTACTCTCCCTCCCCCTCTGCTGTGGGGGAT
ACGAAATGTTACCTTGACTCAATGGAATGTGTAGCGCTTGTTGATCGCCT
CAGTCACGTCCC

Coding sequence (CDS) from alignment at chr17:862621..866632+

>NO17G02940.3 ID=NO17G02940.3|Name=NO17G02940.3|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr17:862621..866632+ (Nannochloropsis oceanica)
ATGGCTCGTCTGTTTCGTTCCGCGGTCGCTCTGGCCATATTCGCCTTTGC
TGGCCTCGCCACTGCCGAGAGCCCCATGCGCCGCAGGCAGCAAATGACCA
CCGGTGCCCTGAAGGACATGCTCCCCGCCTACAAGCCCGACGCCGAGCTC
ACCATGATGCAGGACGCCTGGCGCAACGGCCTGGATGTCATGTCCGTGTT
CACGAGCAACTTCCAGTCGGAGGGGATGAAGGCCGTCCTCGACAACGCCG
AGATCCAGCACACGATCATGGAGAAGCTGCCCCTCCTCGCGGCCTTCGAC
GGTTTCAAGCAGATCACCGGCCGCCGCCTTGATGCCGAAGGGACCAAGGC
GGGCTTTGCCGCTGGCATCAATGCGATGATGACTGCCTTGCCTGACATGC
TCAAGACCATGAAGGACCCCACCATCTCCACCCGCGTCTTGTCCGAGTTG
CTGGCCGACGACGCCGACGGCTTCAGTGAGGTCTTCAACGACGCCTCCTC
GGGCGACAAGGAGGCCATGGCCAAGGTCGAGGCTGCGGTCAACGAGAAGC
TCTTCCCCGGCATTAACACCAGCGCGCTCAAGGCCGTGTCCGAAGGCAAC
CCCCTCAAGTCCCTTCTCGACAACAAGGAGGTCATGCGCCTCATCGACTC
TGATCCAGTCACGTCCATGGCCCTCCGCGCGAACTCCCCCGAAGAGATGG
ATGAATTTGTAAAGAATTACGCCGCCAACCGCCGCTTCCGATTCTAA

Synonyms

Publications