NO14G02080.1, NO14G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02080.1
Unique NameNO14G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length993
Alignment locationchr14:629253..631113 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:629253..631113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02080.1 vs.
Match: EWM24573.1 (mediator of rna polymerase ii transcription [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 1.100e-80
Identity = 207/372 (55.65%), Postives = 234/372 (62.90%), Query Frame = 0 
Query:    1 MASETTSEVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGTEGGQEAGWGGGGGGGGGGGGGGGGGGGGAGSDMYRVAR---KVGKAAKRARAAAAAAAVETSELNAEMNPPTAHYHGYPSSPHSHHHVYQQHPHHQYLQQQHSEGEPMY-------------------QQHQQHQEEE--------------------PRFTSRYPGSSPLAGLLTDHHPEDSAAVDRALGILRMEEVAGGPSGRKDD 331
            MASE+T+EVATRE  EQQPF D HWL Y+GPLR D VLEYF+ SKFYDR SCNEELRMQGA D+R E L  MRG+QYLAEEVPG  PE+PIFVI+KVLRT+ E+PQV+DVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKT+ RAV+Y   GG +E                  G G G  G GGGG  GSDMYRVAR   K GKA KRARAAA  A       +AEM PP++  +G+P  P+S              Q Q+SEGEP+                      H   +                       PRF SRYPG SPLA  +T  HPE+S AVDRA+GILRMEEVAGGP G K+D
Sbjct:   70 MASESTTEVATRETAEQQPFTDPHWLYYHGPLRRDNVLEYFAHSKFYDRCSCNEELRMQGAIDVRQEHLAGMRGVQYLAEEVPGPVPEDPIFVIRKVLRTDSEQPQVMDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTLNRAVSYDCTGGGME------------------GEGAGTAGSGGGGKGGSDMYRVARRASKEGKANKRARAAAVTA-------SAEMYPPSSPQYGFP--PYS-------------WQPQYSEGEPLVLVDGLDPSYALPPMMPPPPLPHLLIEPSSPTASSPPSKSPQQQPQSEERPRFASRYPGPSPLAAAMTHPHPENSVAVDRAMGILRMEEVAGGPRGHKED 401
The following BLAST results are available for this feature:
BLAST of NO14G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24573.11.100e-8055.65mediator of rna polymerase ii transcription [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02080NO14G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02080.1NO14G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02080.1.cds1NO14G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02080.1.cds2NO14G02080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02080.1.cds3NO14G02080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02080.1.cds4NO14G02080.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02080.1.cds5NO14G02080.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02080.1 ID=NO14G02080.1|Name=NO14G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
ATGGCATCCGAGACCACTTCGGAAGTTGCCACGCGCGAGGCACTTGAACA
ACAGCCCTTTATCGACAATCACTGGCTCCTCTACAATGGCCCGTTACGTC
TTGACACTGTCCTCGAGTACTTTTCCCTCAGTAAATTTTATGACCGGCGT
TCGTGCAATGAGGAGCTGCGGATGCAAGGCGCAGAGGACATTCGTCTGGA
AGATTTGGAGATGATGCGTGGTCTGCAATATTTAGCGGAGGAGGTTCCGG
GGCTCAAGCCAGAGAATCCAATTTTTGTTATTAAGAAGGTCCTCCGCACT
GAAAAGGAGGAACCTCAGGTTCTAGACGTGTACTATGTTTTGCAAAACAT
GGTCTACCAAGCCCCTACCATCTTCTCGGTTCTCAACGCGAGGCTGCGTC
GTTGCGCCCACATGCTGAACAAGGCGCAAAAGACCATGAAGCGCGCCGTA
GCCTATGGAGGAGAAGGAGGAACCATAGAGGAGGGAGGGACGGAGGGAGG
ACAGGAAGCAGGATGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGCAGGTAGCGACATGTACCGCGTC
GCTCGCAAGGTAGGAAAGGCGGCTAAGAGGGCCAGGGCTGCTGCGGCGGC
GGCCGCGGTGGAGACATCGGAATTGAATGCAGAGATGAATCCTCCAACGG
CTCATTACCATGGCTATCCTTCATCTCCTCATTCACACCACCACGTCTAC
CAGCAGCACCCGCATCACCAGTACCTGCAGCAGCAGCACTCAGAAGGAGA
ACCGATGTACCAGCAGCATCAGCAGCATCAAGAAGAGGAGCCACGCTTTA
CGTCGAGGTACCCCGGGTCGAGTCCGCTGGCTGGTTTGTTGACCGACCAC
CACCCGGAAGACAGCGCAGCGGTGGATCGGGCGCTTGGAATCTTGCGGAT
GGAGGAAGTGGCTGGCGGACCTAGTGGTCGCAAGGACGATTAG
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protein sequence of NO14G02080.1

>NO14G02080.1-protein ID=NO14G02080.1-protein|Name=NO14G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MASETTSEVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRR
SCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRT
EKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAV
AYGGEGGTIEEGGTEGGQEAGWGGGGGGGGGGGGGGGGGGGGAGSDMYRV
ARKVGKAAKRARAAAAAAAVETSELNAEMNPPTAHYHGYPSSPHSHHHVY
QQHPHHQYLQQQHSEGEPMYQQHQQHQEEEPRFTSRYPGSSPLAGLLTDH
HPEDSAAVDRALGILRMEEVAGGPSGRKDD*
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mRNA from alignment at chr14:629253..631113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02080.1 ID=NO14G02080.1|Name=NO14G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp|location=Sequence derived from alignment at chr14:629253..631113- (Nannochloropsis oceanica)
ATGGCATCCGAGACCACTTCGGAAGTTGCCACGCGCGAGGTGAGTGGTCT
TCGAGAGAGTACGGCAGACGCTGTGTGGGGAGGAATAAATAGCGGCACGA
CGAAAATGTCTGGGGCCGCACTTATCCCCTACTTCATTCGACCAAGTCCG
CAAATATTGCCAGACGCATCTAGCTGTAGACACACAAGCCGTTCATGCCC
CCCGCATAGATAGTACCTGTTATCTGGATTGAGATGCCAGTGAAAATTCT
GTTTAACAGGGAGCCCATATGTGCCCCCCTCCCCCCCCCCTTGCCTTTGC
ACACCGAATTGTTTCTATAAGCACATACATCGTATATCTTTCCATGCTAG
TTATAGCATCATGTTGTTTTCAATTAACATTTACCCATGAAATAAGAATC
GTGTCTCCACTCCTTTCACGTGAACAGCAACGCTTGATTCTACGAAAAGA
TCTGAAACCCCTCCTCCCTCTCTCCCTGCCTCCCTCCATCCCCTCCCTGC
TCCAGGCACTTGAACAACAGCCCTTTATCGACAATCACTGGCTCCTCTAC
AATGGCCCGTTACGTCTTGACACTGTCCTCGAGTACTTTTCCCTCAGTAA
ATTTTATGACCGGCGTTCGTGCAATGAGGAGCTGCGGATGCAAGGCGCAG
AGGACATTCGTCTGGAAGATTTGGAGATGATGCGTGGTCTGCAATATTTA
GCGGAGGAGGTTCCGGGGCTCAAGCCAGAGAATCCAATTTTTGTTATTAA
GAAGGTACGGGGAGGGAGAAGGGTTGGAAGGGAGAGTAAAGTATGTCTAT
GACGTTTTTTTACCTCGTAGTATTAATCATCAAGTGGCTTATCCTCTGTC
CATCCCTGCTTCCTTCAGGTCCTCCGCACTGAAAAGGAGGAACCTCAGGT
TCTAGACGTGTACTATGTTTTGCAAAACATGGTCTACCAAGCCCCTACCA
TCTTCTCGGTTCTCAACGCGAGGCTGCGTCGTTGCGCCCACATGCTGAAC
AAGGCGCAAAAGACCATGAAGCGCGCCGTAGCCTATGGAGGAGAAGGAGG
AACCATAGAGGAGGGAGGGACGGAGGGAGGACAGGAAGCAGGATGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGCAGGTAGCGACATGTACCGCGTCGCTCGCAAGGTAGGAAAGGC
GGCTAAGAGGGCCAGGGCTGCTGCGGCGGCGGCCGCGGTGGAGACATCGG
AATTGAATGCAGAGATGAATCCTCCAACGGCTCATTACCATGGCTATCCT
TCATCTCCTCATTCACACCACCACGTCTACCAGCAGCACCCGCATCACCA
GTACCTGCAGCAGCAGCACTCAGAAGGAGAACCGATGGTGATGGTGGAAG
GAGTCGACGACCACCATCACTATTCTCTTCCCCCCTTGATGATGCCCCCC
CCTCCCCCCCCCTCCCTCATCTGCTCATCGAGCCCTGCTCCCCCTCCGCT
GCCAATTCCCCCTCCTCTCCGTCAGCGGCCCTGCTCCAACAACAGTACCA
GCAGCATCAGCAGCATCAAGAAGAGGAGCCACGCTTTACGTCGAGGTACC
CCGGGTCGAGTCCGCTGGCTGGTTTGTTGACCGACCACCACCCGGAAGAC
AGCGCAGCGGTGGATCGGGCGCTTGGAATCTTGGTAGGTAGAGAATAGGG
GAGGATGCAGGGAGGGTAAGGCGGAAGGAATTGGGAGTTGCCTTTGGGTG
GTGCACTTATTTATACGCATACTCACGTGCGTACATACGCACACTTTTAA
ATGTACAACACAGCGGATGGAGGAAGTGGCTGGCGGACCTAGTGGTCGCA
AGGACGATTAG
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Coding sequence (CDS) from alignment at chr14:629253..631113-

>NO14G02080.1 ID=NO14G02080.1|Name=NO14G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr14:629253..631113- (Nannochloropsis oceanica)
ATGGCATCCGAGACCACTTCGGAAGTTGCCACGCGCGAGGCACTTGAACA
ACAGCCCTTTATCGACAATCACTGGCTCCTCTACAATGGCCCGTTACGTC
TTGACACTGTCCTCGAGTACTTTTCCCTCAGTAAATTTTATGACCGGCGT
TCGTGCAATGAGGAGCTGCGGATGCAAGGCGCAGAGGACATTCGTCTGGA
AGATTTGGAGATGATGCGTGGTCTGCAATATTTAGCGGAGGAGGTTCCGG
GGCTCAAGCCAGAGAATCCAATTTTTGTTATTAAGAAGGTCCTCCGCACT
GAAAAGGAGGAACCTCAGGTTCTAGACGTGTACTATGTTTTGCAAAACAT
GGTCTACCAAGCCCCTACCATCTTCTCGGTTCTCAACGCGAGGCTGCGTC
GTTGCGCCCACATGCTGAACAAGGCGCAAAAGACCATGAAGCGCGCCGTA
GCCTATGGAGGAGAAGGAGGAACCATAGAGGAGGGAGGGACGGAGGGAGG
ACAGGAAGCAGGATGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGCAGGTAGCGACATGTACCGCGTC
GCTCGCAAGGTAGGAAAGGCGGCTAAGAGGGCCAGGGCTGCTGCGGCGGC
GGCCGCGGTGGAGACATCGGAATTGAATGCAGAGATGAATCCTCCAACGG
CTCATTACCATGGCTATCCTTCATCTCCTCATTCACACCACCACGTCTAC
CAGCAGCACCCGCATCACCAGTACCTGCAGCAGCAGCACTCAGAAGGAGA
ACCGATGTACCAGCAGCATCAGCAGCATCAAGAAGAGGAGCCACGCTTTA
CGTCGAGGTACCCCGGGTCGAGTCCGCTGGCTGGTTTGTTGACCGACCAC
CACCCGGAAGACAGCGCAGCGGTGGATCGGGCGCTTGGAATCTTGCGGAT
GGAGGAAGTGGCTGGCGGACCTAGTGGTCGCAAGGACGATTAG
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Synonyms
Publications