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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr14 | genome | chr14:607395..610167 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01990.2 vs.
Match: EWM24650.1 (Nitrogen permease regulator 3 [Nannochloropsis gaditana]) HSP 1 Score: 331.3 bits (848), Expect = 4.300e-87 Identity = 198/390 (50.77%), Postives = 247/390 (63.33%), Query Frame = 0
Query: 9 EGVPMLLGIALVVDDANKGQRLVFRYPALREYGLRHGKSGGLVMSWALQRCAAEFHQLTPEVFARLFRPKAPLCGRPFRVCIDRVHYLSYPVLTASATKETATDDVLLFNIILAIARLPPTAQHSNQPQPQESSSAIAVAAARRRLLVWRRVGQKAT----AAHWMKEDDRGDKERQLQHLENVLELLTKALLHEERRCRYVSKEVRRLLDIGEDAQGGEGLGTAEDAQTMLDTMMEESALASDLKEAFHGLEDGGGLDVAVNGWIRLSLPGWLPTRRGRGGQEKEDEDKEEDEEEDELVLVDARPERVQPDHTLLLLMSEETILAKLPKDGSEQLAMFVQAANPLKTLKEISAATRIALPQLRLLTAHLVHWRLARVIRTISLQSIYAV 395
+G+ LLGIALVVDDANKGQRLVFRYP L S AL RCA +F LTPEVFARLFRPK+ LCG P R+ IDRV YLSYPVLT+SATKE ATDDVLLFN+ILA+ R PPTA + ++ ++ AAAR+R + G+++ A + D ++ R + HLE+VL L++ALLHEERRC YVS EV LLDI E A+ AQTMLDTMMEESALA+DLK +H L +G +DV +N W+RLS+PG P + D+ E + QP TLLLLM EE IL KLP+ GS++L V+AA+PLKTL+E SAA + LP + L AHL W LAR +RTI+L+S+YA+
Sbjct: 9 DGISTLLGIALVVDDANKGQRLVFRYPPLPRLSPYSATGKSTSTSLALYRCAKDFLNLTPEVFARLFRPKSVLCGHPLRISIDRVRYLSYPVLTSSATKEIATDDVLLFNVILAMGRTPPTAL-TRDSLIEQCLPTMSRAAARQRSVACNHSGERSVKLLPTATTCERLDAVERSRGVHHLEDVLGRLSRALLHEERRCGYVSLEVGTLLDIAERMH-------AKGAQTMLDTMMEESALAADLKRIYHSLREGEDVDVIINDWLRLSIPGSFP---------RHDDQVEVGNSTSHTSGIGP----FQPSQTLLLLMDEEDILTKLPERGSQKLRDLVRAASPLKTLEETSAAIHVDLPHMYTLAAHLQFWGLARAMRTITLESVYAL 377
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01990.2 ID=NO14G01990.2|Name=NO14G01990.2|organism=Nannochloropsis oceanica|type=mRNA|length=2631bp
ACATTTGTCGCTTATTCTTTCAAGTCACTCACGTCGCCTACAAAAAAGTC
TCGTTGTTTTTAGAGACAGTGAAGTAGCAGGGAAGGCCGAGATCTTAGAC
CGTGGTTCCACCTGTGCTAAAGCCATCGCTGCCGCTGCAGCCGAGAAAGA
TTCGACTGTTGGAGGCTCTCGCGGCCCGGGACTCGACATGAAAAAGCGTA
TGTGCCGCCTCCGTTGCGTGGCATTTCTTTTCGCCCACTGCTTCCCTCGA
ACCAGTAAAGACGAAGCTGCATAGTCACCGAAGAAGCACGTCATGTAGTC
CAGCCGCAAGACGAGAGAGGCCGCGGCCCCATCCGACGTTTCCGGTCTTA
TGGAGCACCAGCCGTGGGCTGAAGAGGGAGTCCCCGTGCTACTATGCATC
TTTTTTCAATTGGTAACCGTTGTTTCCTTATCTTGCACGTCTATTTGTAA
AAAAAGGCACCACGCTCTTACCTGACTTAAAATATAATGCTCACGAAAAA
GCGCCAGAGGGCAAACAAAGACACCCCTATACTATATGATTGTTACTTGT
TCTCATCACCTGTCTTACATCGCACACACTCACATTAAGACCTCCAGCGC
TGCGGCTGGTGTAGAAGTGGCCCGGTGCAGCTCGCGCGACATCCTCGGAT
TCCAAGCCCTACCTTACAGAACGCCCCATCCGACTTTTCCGGTCTTATGG
ATCACCAGCCGCGGGCTAAAGAGGGCGTCCCCATGCTACTAGGCATCGCC
TTGGTGGTGGATGATGCCAACAAAGGTCAGCGGCTCGTATTCCGGTACCC
AGCTCTGCGGGAATATGGGCTTCGGCATGGCAAATCAGGGGGGCTTGTGA
TGAGCTGGGCACTCCAGCGGTGCGCAGCTGAATTTCACCAGTTGACCCCC
GAGGTTTTTGCACGACTCTTCCGGCCAAAGGCTCCCTTGTGCGGTCGGCC
TTTCCGGGTGTGCATTGATCGCGTGCACTACTTGAGTTATCCTGTGCTTA
CGGCCAGCGCCACCAAGGAGACGGCGACGGACGACGTCCTCCTGTTTAAT
ATCATCCTCGCCATCGCCCGCCTGCCGCCCACCGCTCAGCATTCAAACCA
ACCACAGCCCCAGGAATCATCGTCAGCAATCGCTGTGGCAGCTGCACGCA
GGCGATTGTTGGTTTGGCGCCGCGTGGGCCAGAAAGCGACAGCGGCGCAT
TGGATGAAAGAGGATGACAGGGGCGACAAAGAAAGGCAGCTGCAGCACTT
GGAAAATGTATTGGAGCTTCTGACCAAGGCTTTGTTGCATGAAGAGCGTC
GCTGTCGATATGTGAGCAAAGAGGTCCGGAGGCTGTTGGATATTGGAGAG
GATGCACAGGGGGGGGAGGGCCTTGGCACGGCGGAGGACGCCCAGACGAT
GCTTGACACGATGATGGAGGAAAGCGCTCTGGCAAGTGATCTAAAAGAGG
CCTTTCATGGGCTTGAGGACGGTGGGGGACTTGATGTTGCCGTAAATGGT
TGGATCCGCCTTAGCTTGCCGGGGTGGCTGCCCACCCGGCGAGGCAGAGG
AGGCCAGGAGAAGGAGGACGAGGACAAGGAGGAGGACGAGGAGGAGGACG
AGCTGGTCTTGGTGGATGCGAGGCCGGAGCGTGTTCAGCCCGACCATACC
CTGCTTCTGCTAATGAGTGAGGAGACTATTCTGGCGAAGCTACCTAAGGA
CGGGTCAGAGCAGCTGGCTATGTTTGTGCAAGCTGCCAACCCACTAAAGA
CGCTGAAGGAGATCTCGGCAGCGACCCGCATTGCCCTACCACAACTGCGC
CTGTTGACGGCCCACCTCGTGCATTGGCGACTTGCACGTGTCATTCGTAC
CATTTCATTGCAAAGTATTTATGCGGTGAGTGGGTGGTTTGAGTGTTGAC
GGCCATGAGTGTGTGGATCGACGGGAATCGTCTTGTGATGCCTATGTGGC
CTCACAAAAAAATAACACAACAATTTCCTACCACAGTAGAGTCAGTAAAT
GAGCAATACGCTAATTTCAAAGCTAACCCTCAGAACGACCTTCACGCTCT
CTCTATTTCCTTGTCCACTGCTCAATGTGCAATAGATCAAACCCACGGCG
CCGACGCAGGTGTTTTCCATGCATGCCATGGCATTTGAGCAGCGTTTCCC
CATCTCCTCCTTTTTTAGCGTGCTCGGCTCGTTCGGGGCGGGTAAGAGTC
TGCAAGGTCTCCTGGAAGGCTTAACTGAGGACGGCCAAGTCGAGCGCCTG
GCGCAACTGGTGTGGCTCCTACAGCAGGATATTGTACATGAGATTGAGCT
TTTTGAGGGACAGGGGCTGGAAAAGATGTGATGAGCATGGGAAAGAAGTT
GTGACGCTCTCATCGATTATCAACATGGTGGGCGGCGTGTACTATACATG
AACGTGTACAGAAGATTCGAATCAAGAGATGAGAAGAAATGAAACGAAAG
CGCAGGCATTTGCATGATGCGTAGGAATTGATTTACGTATCCTTTTCATT
GTATGATTTCTACACGTCTGGAGAGTGGATGAATATTCGACCATGTAATG
TAAAAAATGCTACACGGCGAGAGTCGACGACTCCGATAATATGGAATGAA
AACAAAGACCATTTTGGTCTCGATCCGAGCT back to topprotein sequence of NO14G01990.2 >NO14G01990.2-protein ID=NO14G01990.2-protein|Name=NO14G01990.2|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MDHQPRAKEGVPMLLGIALVVDDANKGQRLVFRYPALREYGLRHGKSGGL
VMSWALQRCAAEFHQLTPEVFARLFRPKAPLCGRPFRVCIDRVHYLSYPV
LTASATKETATDDVLLFNIILAIARLPPTAQHSNQPQPQESSSAIAVAAA
RRRLLVWRRVGQKATAAHWMKEDDRGDKERQLQHLENVLELLTKALLHEE
RRCRYVSKEVRRLLDIGEDAQGGEGLGTAEDAQTMLDTMMEESALASDLK
EAFHGLEDGGGLDVAVNGWIRLSLPGWLPTRRGRGGQEKEDEDKEEDEEE
DELVLVDARPERVQPDHTLLLLMSEETILAKLPKDGSEQLAMFVQAANPL
KTLKEISAATRIALPQLRLLTAHLVHWRLARVIRTISLQSIYAVSGWFEC
* back to topmRNA from alignment at chr14:607395..610167+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01990.2 ID=NO14G01990.2|Name=NO14G01990.2|organism=Nannochloropsis oceanica|type=mRNA|length=2773bp|location=Sequence derived from alignment at chr14:607395..610167+ (Nannochloropsis oceanica)
ACATTTGTCGCTTATTCTTTCAAGTCACTCACGTCGCCTACAAAAAAGTC
TCGTTGTTTTTAGAGACAGTGAAGTAGCAGGGAAGGCCGAGATCTTAGAC
CGTGGTTCCACCTGTGCTAAAGCCATCGCTGCCGCTGCAGCCGAGAAAGA
TTCGACTGTTGGAGGCTCTCGCGGCCCGGGACTCGACATGAAAAAGCGTA
TGTGCCGCCTCCGTTGCGTGGCATTTCTTTTCGCCCACTGCTTCCCTCGA
ACCAGTAAAGACGAAGCTGCATAGTCACCGAAGAAGCACGTCATGTAGTC
CAGCCGCAAGACGAGAGAGGCCGCGGCCCCATCCGACGTTTCCGGTCTTA
TGGAGCACCAGCCGTGGGCTGAAGAGGGAGTCCCCGTGCTACTATGCATC
TTTTTTCAATTGGTAACCGTTGTTTCCTTATCTTGCACGTCTATTTGTAA
AAAAAGGCACCACGCTCTTACCTGACTTAAAATATAATGCTCACGAAAAA
GCGCCAGAGGGCAAACAAAGACACCCCTATACTATATGATTGTTACTTGT
TCTCATCACCTGTCTTACATCGCACACACTCACATTAAGACCTCCAGCGC
TGCGGCTGGTGTAGAAGTGGCCCGGTGCAGCTCGCGCGACATCCTCGGAT
TCCAAGCCCTACCTTACAGAACGCCCCATCCGACTTTTCCGGTCTTATGG
ATCACCAGCCGCGGGCTAAAGAGGGCGTCCCCATGCTACTAGGCATCGCC
TTGGTGGTGGATGATGCCAACAAAGGTCAGCGGCTCGTATTCCGGTACCC
AGCTCTGCGGGAATATGGGCTTCGGCATGGCAAATCAGGGGGGCTTGTGA
TGAGCTGGGCACTCCAGCGGTGCGCAGCTGAATTTCACCAGTTGACCCCC
GAGGTTTTTGCACGACTCTTCCGGCCAAAGGCTCCCTTGTGCGGTCGGCC
TTTCCGGGTGTGCATTGATCGCGTGCACTACTTGAGTTATCCTGTGCTTA
CGGCCAGCGCCACCAAGGAGACGGCGACGGACGACGTCCTCCTGTTTAAT
ATCATCCTCGCCATCGCCCGCCTGCCGCCCACCGCTCAGCATTCAAACCA
ACCACAGCCCCAGGAATCATCGTCAGCAATCGCTGTGGCAGCTGCACGCA
GGCGATTGTTGGTTTGGCGCCGCGTGGGCCAGAAAGCGACAGCGGCGCAT
TGGATGAAAGAGGATGACAGGGGCGACAAAGAAAGGCAGCTGCAGCACTT
GGAAAATGTATTGGAGCTTCTGACCAAGGCTTTGTTGCATGAAGAGCGTC
GCTGTCGATATGTGAGCAAAGAGGTCCGGAGGCTGTTGGATATTGGAGAG
GATGCACAGGGGGGGGAGGGCCTTGGCACGGCGGAGGACGCCCAGACGAT
GCTTGACACGATGATGGAGGAAAGCGCTCTGGCAAGTGATCTAAAAGAGG
CCTTTCATGGGCTTGAGGACGGTGGGGGACTTGATGTTGCCGTAAATGGT
TGGATCCGCCTTAGCTTGCCGGGGTGGCTGCCCACCCGGCGAGGCAGAGG
AGGCCAGGAGAAGGAGGACGAGGACAAGGAGGAGGACGAGGAGGAGGACG
AGCTGGTCTTGGTGGATGCGAGGCCGGAGCGTGTTCAGCCCGACCATACC
CTGCTTCTGCTAATGAGTGAGGAGACTATTCTGGCGAAGCTACCTAAGGA
CGGGTCAGAGCAGCTGGCTATGTTTGTGCAAGCTGCCAACCCACTAAAGA
CGCTGAAGGAGATCTCGGCAGCGACCCGCATTGCCCTACCACAACTGCGC
CTGTTGACGGCCCACCTCGTGCATTGGCGACTTGCACGTGTCATTCGTAC
CATTTCATTGCAAAGTATTTATGCGGTGAGTGGGTGGTTTGAGTGTTGAC
GGCCATGAGTGTGTGGATCGACGGGAATCGTCTTGTGATGCCTATGTGGC
CTCACAAAAAAATAACACAACAATTTCCTACCACAGTAGAGTCAGTAAAT
GAGCAATACGCTAATTTCAAAGCTAACCCTCAGAACGACCTTCACGCTCT
CTCTATTTCCTTGTCCACTGCTCAATGTGCAATAGATCAAACCCACGGCG
CCGACGCAGGTGTTTTCCATGCATGCCATGGCATTTGAGCAGCGTTTCCC
CATCTCCTCCTTTTTTAGCGTGCTCGGCTCGTTCGGGGCGGGTAAGAGTC
TGCAAGGTCTCCTGGAAGGCTTAACTGAGGTAAAAAGAGGCCGCGGGATG
ATGGTTTGAAAAGGAGAAGGCGATGTGCCATGACTTAGTCGGCTGGAATA
TGGAAGGAGGGTAGCATTCTATAGCTATCCGCTGCTTTTAATCACACTCC
AATTATTGTCCTACCGTCCAGGACGGCCAAGTCGAGCGCCTGGCGCAACT
GGTGTGGCTCCTACAGCAGGATATTGTACATGAGATTGAGCTTTTTGAGG
GACAGGGGCTGGAAAAGATGTGATGAGCATGGGAAAGAAGTTGTGACGCT
CTCATCGATTATCAACATGGTGGGCGGCGTGTACTATACATGAACGTGTA
CAGAAGATTCGAATCAAGAGATGAGAAGAAATGAAACGAAAGCGCAGGCA
TTTGCATGATGCGTAGGAATTGATTTACGTATCCTTTTCATTGTATGATT
TCTACACGTCTGGAGAGTGGATGAATATTCGACCATGTAATGTAAAAAAT
GCTACACGGCGAGAGTCGACGACTCCGATAATATGGAATGAAAACAAAGA
CCATTTTGGTCTCGATCCGAGCT back to topCoding sequence (CDS) from alignment at chr14:607395..610167+ >NO14G01990.2 ID=NO14G01990.2|Name=NO14G01990.2|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr14:607395..610167+ (Nannochloropsis oceanica)
ATGGATCACCAGCCGCGGGCTAAAGAGGGCGTCCCCATGCTACTAGGCAT
CGCCTTGGTGGTGGATGATGCCAACAAAGGTCAGCGGCTCGTATTCCGGT
ACCCAGCTCTGCGGGAATATGGGCTTCGGCATGGCAAATCAGGGGGGCTT
GTGATGAGCTGGGCACTCCAGCGGTGCGCAGCTGAATTTCACCAGTTGAC
CCCCGAGGTTTTTGCACGACTCTTCCGGCCAAAGGCTCCCTTGTGCGGTC
GGCCTTTCCGGGTGTGCATTGATCGCGTGCACTACTTGAGTTATCCTGTG
CTTACGGCCAGCGCCACCAAGGAGACGGCGACGGACGACGTCCTCCTGTT
TAATATCATCCTCGCCATCGCCCGCCTGCCGCCCACCGCTCAGCATTCAA
ACCAACCACAGCCCCAGGAATCATCGTCAGCAATCGCTGTGGCAGCTGCA
CGCAGGCGATTGTTGGTTTGGCGCCGCGTGGGCCAGAAAGCGACAGCGGC
GCATTGGATGAAAGAGGATGACAGGGGCGACAAAGAAAGGCAGCTGCAGC
ACTTGGAAAATGTATTGGAGCTTCTGACCAAGGCTTTGTTGCATGAAGAG
CGTCGCTGTCGATATGTGAGCAAAGAGGTCCGGAGGCTGTTGGATATTGG
AGAGGATGCACAGGGGGGGGAGGGCCTTGGCACGGCGGAGGACGCCCAGA
CGATGCTTGACACGATGATGGAGGAAAGCGCTCTGGCAAGTGATCTAAAA
GAGGCCTTTCATGGGCTTGAGGACGGTGGGGGACTTGATGTTGCCGTAAA
TGGTTGGATCCGCCTTAGCTTGCCGGGGTGGCTGCCCACCCGGCGAGGCA
GAGGAGGCCAGGAGAAGGAGGACGAGGACAAGGAGGAGGACGAGGAGGAG
GACGAGCTGGTCTTGGTGGATGCGAGGCCGGAGCGTGTTCAGCCCGACCA
TACCCTGCTTCTGCTAATGAGTGAGGAGACTATTCTGGCGAAGCTACCTA
AGGACGGGTCAGAGCAGCTGGCTATGTTTGTGCAAGCTGCCAACCCACTA
AAGACGCTGAAGGAGATCTCGGCAGCGACCCGCATTGCCCTACCACAACT
GCGCCTGTTGACGGCCCACCTCGTGCATTGGCGACTTGCACGTGTCATTC
GTACCATTTCATTGCAAAGTATTTATGCGGTGAGTGGGTGGTTTGAGTGT
TGA back to top
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