NO14G01910.1, NO14G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01910.1
Unique NameNO14G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1154
Alignment locationchr14:589941..591094 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:589941..591094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01910.1 vs.
Match: EWM24622.1 (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 317.4 bits (812), Expect = 3.400e-83
Identity = 168/214 (78.50%), Postives = 187/214 (87.38%), Query Frame = 0 
Query:    1 MQVENIQGLYEYEVLEAEGSYKAAMDELKTRLLDTMEQRVKRLEEDRERVMKQLERVGQTRMLRSKSVFRADGHLEAEGLNRAGARAGVGEGGGEVVGGNVSMFLSDGEIKDDLRQISTDLAERARSYYDSQSDVMVEVSVEDNCLHYNDHCLLKGESIIFTSMLSGEDFVGRIASVRPHEILVKLSDGTKARIHMSYLRNGRIKLKCEGDATE 215
            MQVENI+GLYEYEV+EAE +YK AMDELKTRLLDTMEQRVKRLEEDRERV+KQLERVGQTR+LRSK+V RA+   +     + GA   VG  GG    GNVSMFLSDGEIKDDLR IS DLAERAR+YYD+QSD MVEVSVEDNCLHY +HCLLKGESI+FTSMLSGEDFVGRIASVRPHE+LV+LSDGTKARIH++YLRNGRIKLK + D+TE
Sbjct:  138 MQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAE---DPGDPLQGGA---VGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTE 345
The following BLAST results are available for this feature:
BLAST of NO14G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24622.13.400e-8378.50Nucleic acid-binding protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01910NO14G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01910.1NO14G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01910.1.cds1NO14G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01910.1 ID=NO14G01910.1|Name=NO14G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
ATGCAGGTGGAGAATATTCAGGGGTTGTATGAGTATGAGGTGCTGGAGGC
GGAGGGGTCTTACAAGGCTGCGATGGATGAGTTGAAGACGCGGTTGCTCG
ACACGATGGAGCAGCGGGTGAAGAGGTTGGAAGAGGATAGAGAGAGGGTG
ATGAAGCAATTGGAGAGGGTGGGACAGACGCGTATGTTGCGGAGCAAGAG
TGTCTTCCGGGCAGACGGCCACCTGGAAGCGGAGGGTTTGAATAGGGCGG
GAGCACGGGCGGGAGTAGGGGAGGGAGGTGGGGAGGTAGTGGGGGGGAAT
GTGAGCATGTTTTTGAGTGATGGGGAGATTAAGGATGACTTGAGGCAGAT
TTCGACGGATTTGGCGGAGAGGGCTCGGTCGTATTATGACTCCCAGTCTG
ATGTAATGGTGGAGGTGAGTGTGGAGGATAACTGCTTGCATTACAACGAC
CACTGTCTATTGAAGGGGGAATCGATAATTTTTACGTCCATGCTGAGTGG
GGAGGATTTCGTGGGGCGGATTGCCTCCGTAAGGCCGCACGAGATTTTGG
TGAAGCTTTCGGATGGGACCAAGGCTAGGATCCACATGAGTTATTTGAGG
AATGGGCGGATTAAATTGAAATGCGAGGGGGATGCCACGGAGGCATAGAG
ACGGGAGGGGGAAGGTGGGTGGAGGGAGTAATGGTTGGAGGGTGAGGGAG
GGAAGGAGCAAGATCATTGAAAGGATGATACGGAGCACGAATCTGCTATT
TGAGAGACGCGAGGGAGGGTGGTATGTGGTTGGAGAACGGAGGAGGATTC
CGAAATGTTTGGGCACAGAAGATAGAAGAGGGAAAGCAAAAGGAAATGTC
TTCTCCTTCTGAGTGGATGATAGAGCGAATTTGTGAGTGGGTGCGGTTGA
TCAAATTAGCAAATCAAAAGGAATGTACGTGTCTATGTGCTACTGTTGTG
TGGGCAGCATTCAGGGAATAGAAAAATGGCCACTTGACGATGGGGCGAAG
GAGAGTGAGAAGAGACAGGGAGAATGAATGACATATGAGGACACGCAAAT
AAATACTCAACAACGAGAGAAGGAAAGAAAGAGAGGACACGAGAATAACC
CCAGCCTGTCTTCCTTCCACGTCTCTCAAAGCAAAACAGCGAGCTTGAAA
GAGA
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protein sequence of NO14G01910.1

>NO14G01910.1-protein ID=NO14G01910.1-protein|Name=NO14G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MQVENIQGLYEYEVLEAEGSYKAAMDELKTRLLDTMEQRVKRLEEDRERV
MKQLERVGQTRMLRSKSVFRADGHLEAEGLNRAGARAGVGEGGGEVVGGN
VSMFLSDGEIKDDLRQISTDLAERARSYYDSQSDVMVEVSVEDNCLHYND
HCLLKGESIIFTSMLSGEDFVGRIASVRPHEILVKLSDGTKARIHMSYLR
NGRIKLKCEGDATEA*
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mRNA from alignment at chr14:589941..591094+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01910.1 ID=NO14G01910.1|Name=NO14G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp|location=Sequence derived from alignment at chr14:589941..591094+ (Nannochloropsis oceanica)
ATGCAGGTGGAGAATATTCAGGGGTTGTATGAGTATGAGGTGCTGGAGGC
GGAGGGGTCTTACAAGGCTGCGATGGATGAGTTGAAGACGCGGTTGCTCG
ACACGATGGAGCAGCGGGTGAAGAGGTTGGAAGAGGATAGAGAGAGGGTG
ATGAAGCAATTGGAGAGGGTGGGACAGACGCGTATGTTGCGGAGCAAGAG
TGTCTTCCGGGCAGACGGCCACCTGGAAGCGGAGGGTTTGAATAGGGCGG
GAGCACGGGCGGGAGTAGGGGAGGGAGGTGGGGAGGTAGTGGGGGGGAAT
GTGAGCATGTTTTTGAGTGATGGGGAGATTAAGGATGACTTGAGGCAGAT
TTCGACGGATTTGGCGGAGAGGGCTCGGTCGTATTATGACTCCCAGTCTG
ATGTAATGGTGGAGGTGAGTGTGGAGGATAACTGCTTGCATTACAACGAC
CACTGTCTATTGAAGGGGGAATCGATAATTTTTACGTCCATGCTGAGTGG
GGAGGATTTCGTGGGGCGGATTGCCTCCGTAAGGCCGCACGAGATTTTGG
TGAAGCTTTCGGATGGGACCAAGGCTAGGATCCACATGAGTTATTTGAGG
AATGGGCGGATTAAATTGAAATGCGAGGGGGATGCCACGGAGGCATAGAG
ACGGGAGGGGGAAGGTGGGTGGAGGGAGTAATGGTTGGAGGGTGAGGGAG
GGAAGGAGCAAGATCATTGAAAGGATGATACGGAGCACGAATCTGCTATT
TGAGAGACGCGAGGGAGGGTGGTATGTGGTTGGAGAACGGAGGAGGATTC
CGAAATGTTTGGGCACAGAAGATAGAAGAGGGAAAGCAAAAGGAAATGTC
TTCTCCTTCTGAGTGGATGATAGAGCGAATTTGTGAGTGGGTGCGGTTGA
TCAAATTAGCAAATCAAAAGGAATGTACGTGTCTATGTGCTACTGTTGTG
TGGGCAGCATTCAGGGAATAGAAAAATGGCCACTTGACGATGGGGCGAAG
GAGAGTGAGAAGAGACAGGGAGAATGAATGACATATGAGGACACGCAAAT
AAATACTCAACAACGAGAGAAGGAAAGAAAGAGAGGACACGAGAATAACC
CCAGCCTGTCTTCCTTCCACGTCTCTCAAAGCAAAACAGCGAGCTTGAAA
GAGA
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Coding sequence (CDS) from alignment at chr14:589941..591094+

>NO14G01910.1 ID=NO14G01910.1|Name=NO14G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at chr14:589941..591094+ (Nannochloropsis oceanica)
ATGCAGGTGGAGAATATTCAGGGGTTGTATGAGTATGAGGTGCTGGAGGC
GGAGGGGTCTTACAAGGCTGCGATGGATGAGTTGAAGACGCGGTTGCTCG
ACACGATGGAGCAGCGGGTGAAGAGGTTGGAAGAGGATAGAGAGAGGGTG
ATGAAGCAATTGGAGAGGGTGGGACAGACGCGTATGTTGCGGAGCAAGAG
TGTCTTCCGGGCAGACGGCCACCTGGAAGCGGAGGGTTTGAATAGGGCGG
GAGCACGGGCGGGAGTAGGGGAGGGAGGTGGGGAGGTAGTGGGGGGGAAT
GTGAGCATGTTTTTGAGTGATGGGGAGATTAAGGATGACTTGAGGCAGAT
TTCGACGGATTTGGCGGAGAGGGCTCGGTCGTATTATGACTCCCAGTCTG
ATGTAATGGTGGAGGTGAGTGTGGAGGATAACTGCTTGCATTACAACGAC
CACTGTCTATTGAAGGGGGAATCGATAATTTTTACGTCCATGCTGAGTGG
GGAGGATTTCGTGGGGCGGATTGCCTCCGTAAGGCCGCACGAGATTTTGG
TGAAGCTTTCGGATGGGACCAAGGCTAGGATCCACATGAGTTATTTGAGG
AATGGGCGGATTAAATTGAAATGCGAGGGGGATGCCACGGAGGCATAG
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Synonyms
Publications