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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr14 | genome | chr14:545940..548905 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01770.1 vs.
Match: EWM24615.1 (protein transport protein sec61 subunit alpha [Nannochloropsis gaditana]) HSP 1 Score: 893.6 bits (2308), Expect = 2.600e-256 Identity = 456/462 (98.70%), Postives = 460/462 (99.57%), Query Frame = 0
Query: 1 MVRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKARALKEAFYRQNLPNITNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMSEILSDPFHAIFYLVFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFV 463
MVRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDK RALKEAFYRQNLPN+TNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSM+EILSDPFHA+FYL FILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMF+
Sbjct: 1 MVRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFM 462
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01770.1 ID=NO14G01770.1|Name=NO14G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2611bp
CTCAGAGAGCCTCATTCATCACACCCGACCAACTTCTTCGTCGTGCTTGG
TTTGTGCTTGTCTGTCCTCTTTATGCGTGGCAGAATGCCATCTACTTCAG
GCTCCGTTCGTCAACTGATGTTGGCTTCAGGTTGTCACGGGGCTTTCTGC
CGACCCAGTGGCCTAGCTAACGAGCAAGCCCCGCCTCGGTTGTGAGTGAC
CATCATTCCTCCAGTCAACTGCTATTCTGGCTAGCGTGGGCACACACCCA
ACAACCGATCACCCCAGGAACTAGATTTGTAAAAAGCCTGTGATGGGGGA
TTCTGGAAAGGAAGGCCCGGTTCTTGTCCGAAGTCGCACACTGGATGCAG
GCGCCCGCCCCTCCTTATGCCTCTTCGCTCAGACTCCTATTTCAAACGAC
AGGGTGTGTGGCTCCCGCCGTTGCACCCTTACGCGGTCTCGAATACACGC
GCCCTCGACATACCCACACGCCTCACATTTATCAACAACACAGGTGGTGC
ATTGTCTTGCGCGGCCTGAGCAGAGCAAGCGGCGGAGACGAGAACTTCAC
GACCAAGCCCATACCTCGTGAGAGAAGGAGCAGCGCGGCAACCCTCAGTA
AGCAACCATGGTCCGCTTCTTGCACCTCATTCGCCCGGTGCTCTGCATCG
TCCCTGAGGTGGCAGCACCTGTGGATAGGAAGATTCCGTTCCGTGAGAAG
GTCCTGTGGACGGTCGTTACCCTCTTCATCTTCCTAGTCTGTTGTCAGAT
TCCGATTTACGGCGTGCAGTCCGCCAAGTCCTCCGACCCCTTCTACTGGA
TGCGCGTCATCTTGGCGTCTAATAGAGGCACGCTGATGGAGCTTGGCATC
TCCCCCATCGTCACTTCCGGTCTGGTCATGCAGCTCCTGGCTGGCTCCCG
CATTATTGAGGTCAACCAGTCTTTGAAGGAAGATCGTGCCCTCTTTTCGG
GCGCGCAGAAGTTGTTCGGGATTTTGATCACGATTGGTGAGGCAGTCGCA
TACGTTTTTTCTGGCATGTATGGTGACTTGAACTCGCTTGGGTGGGGAAA
TGCGATTTTGATCATTGCCCAGTTGTTCATTGCGGGGATGATTGTGATCA
CGCTGGATGAGTTACTGCAGAAGGGCTACGGACTTGGAAGCGGGATTTCC
CTATTTATTGCCACTAACATTTGCGAGAATATTATTTGGAAGGCGTTCAG
TCCCACGACGATCAACACGGGACGAGGAACGGAGTTCGAGGGGGCGATTA
TCGCCTTGTTCCATCTGTTGATTACCCGAAGCGATAAAGCGCGTGCCTTG
AAGGAAGCTTTCTATCGTCAAAACCTGCCAAATATCACCAATCTACTCGC
AACGGTTTTAGTCTTCATCATCGTCATCTACTTTCAAGGCTGGCGTGTCG
ACCTCCCCGTCAAGTCCCAGCGTTATCGCGGCCAGCAAGGCACCTACCCC
ATAAAGCTCTTCTACACGTCGAACATGCCTATCATCCTCCAAACCGCCTT
GGTATCCAACCTGTACTTCCTCTCACAGCTTCTCCACAAGCGTTTCAGCG
GGAACATCCTGGTGCGTCTCCTCGGTCGATGGCAGGAGGTCGAAGGCCAG
CAAGGGCAGTCCGTGCCTGTCGGTGGAATTGCTTATTACATCTCCCCCCC
TCATTCCATGAGTGAAATTCTGTCCGATCCCTTTCATGCCATCTTCTACC
TGGTGTTTATTTTGTCTTCGTGTGCGTTGTTTTCCAAGACCTGGATTGAG
GTGTCCGGGTCCAGTGCGAAGGACGTGGCGAAGCAGCTCCGCGACTCCAA
GATGGTGATGAAGGGGCACCGTGACTCTGCCCTTGTGCATGAATTGAATC
GTTACATTCCCGTGGCGGCGGCCTTCGGTGGCATGTGTATTGGCGCCCTG
ACGGTGGTGGCTGATTTCCTTGGGGCGATTGGCTCGGGGACCGGCATCTT
GCTGGCTGTGACGATTATTTACCAGTACTACGAGATGTTTGTCTCGCAGA
CGGCCAACCCGGATGCTGGGTTTTAAGATGAAAGTGCAGAGAGAGAAGCA
GGAGGTTAGAGAGGCTGGGGGTAGGCATAAAAGAGAGGAAGGAGAAAGAG
GTGTGGTGAGCCAAGCTTCCTTAAGGAGAGGGAATGCGTCGTGAGAGAAA
GGGCAAGGGGAGGAGATGAGTGAACGGCGGCAGAAAGAAGGGGAGAGATA
GAGAACAGAAAACATGGATGGAGAAATGAAATGTTACTTGCTTTCAATCG
AAAGTGAAGGAGAGAAGAGAATGACGGATTGGTTGGGAGAGATTTTGTGT
GCGTGTGGCTGATGATGAGAGGCATGCAGCTAAGTTGACCCTTGAGAGAC
CTCATGCTGAGGAAAGGGAAGGAGGGAGGGGAAAAGGATAGAGACTGGAT
AATAGGGAAAAGGCTGCCAGGAAGCTGTTGTAGACGGACCGGTTTTCTTG
GGCAGGCACTAACCATCAGACATCAGAACGAACGGGTGAAAGAAATATTA
ACTCAACCAAAAAAATAAGTGGAGAAGCGGTCAAGAGCACAAAAGCAAGA
CAAACTGACTTCCAAAAACGCGTTTGAAAAACGGAGAGGAAGAAAAGGAC
GAGATCTCAAG back to topprotein sequence of NO14G01770.1 >NO14G01770.1-protein ID=NO14G01770.1-protein|Name=NO14G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MVRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPI
YGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRII
EVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAI
LIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPT
TINTGRGTEFEGAIIALFHLLITRSDKARALKEAFYRQNLPNITNLLATV
LVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVS
NLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHS
MSEILSDPFHAIFYLVFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMV
MKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLA
VTIIYQYYEMFVSQTANPDAGF* back to topmRNA from alignment at chr14:545940..548905- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01770.1 ID=NO14G01770.1|Name=NO14G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2966bp|location=Sequence derived from alignment at chr14:545940..548905- (Nannochloropsis oceanica)
CTCAGAGAGCCTCATTCATCACACCCGACCAACTTCTTCGTCGTGCTTGG
TTTGTGCTTGTCTGTCCTCTTTATGCGTGGCAGAATGCCATCTACTTCAG
GCTCCGTTCGTCAACTGATGTTGGCTTCAGGTTGTCACGGGGCTTTCTGC
CGACCCAGTGGCCTAGCTAACGAGCAAGCCCCGCCTCGGTTGTGAGTGAC
CATCATTCCTCCAGTCAACTGCTATTCTGGCTAGCGTGGGCACACACCCA
ACAACCGATCACCCCAGGAACTAGATTTGTAAAAAGCCTGTGATGGGGGA
TTCTGGAAAGGAAGGCCCGGTTCTTGTCCGAAGTCGCACACTGGATGCAG
GCGCCCGCCCCTCCTTATGCCTCTTCGCTCAGACTCCTATTTCAAACGAC
AGGGTGTGTGGCTCCCGCCGTTGCACCCTTACGCGGTCTCGAATACACGC
GCCCTCGACATACCCACACGCCTCACATTTATCAACAACACAGGTGGTGC
ATTGTCTTGCGCGGCCTGAGCAGAGCAAGCGGCGGAGACGAGAACTTCAC
GACCAAGCCCATACCTCGTGAGAGAAGGAGCAGCGCGGCAACCCTCAGTA
AGCAACCATGGTCCGCTTCTTGCACCTCATTCGCCCGGTGCTCTGCATCG
TCCCTGAGGTGGCAGCACCTGTGGATAGGAAGATTCCGTTCCGTGAGAAG
GTCCTGTGGACGGTCGTTACCCTCTTCATCTTCCTAGTCTGTTGTCAGAT
TCCGATTTACGGCGTGCAGTCCGCCAAGTCCTCCGACCCCTTCTACTGGA
TGCGCGTCATCTTGGCGTCTAATAGGTAAGTTTTCGTGCGAGGTACAGTA
CCAGTTGTGATATGTGTGGGTTGACATGCTGGCAGATCGGTGGGCATGAT
TGGTGGGCTTAATTTCACCAAATTTCTGCTTAGCCCGACTCTATTCTTTC
ACGTCGTCACTGGCCTGTGGCACAATTTTTTCTCATTTGTCATATGTTCT
GCAGGGGTGTAAGTGCGGGTTACCGTGCACTACTGCTGGGCATTGCATTC
AGATTTCTTTTTCAGCCTGCCCCTTATGGATGGGGATGATGACCCCTCGC
TCTGTACCGCACCACTTCATCACACACGCCCTTACTCCTGCCTACCTTCC
TCCCTCCCTGTCCCTTTTCTTCCAAAATAGAGGCACGCTGATGGAGCTTG
GCATCTCCCCCATCGTCACTTCCGGTCTGGTCATGCAGCTCCTGGCTGGC
TCCCGCATTATTGAGGTCAACCAGTCTTTGAAGGAAGATCGTGCCCTCTT
TTCGGGCGCGCAGAAGTTGTTCGGGATTTTGATCACGATTGGTGAGGCAG
TCGCATACGTTTTTTCTGGCATGTATGGTGACTTGAACTCGCTTGGGTGG
GGAAATGCGATTTTGATCATTGCCCAGTTGTTCATTGCGGGGATGATTGT
GATCACGCTGGATGAGTTACTGCAGAAGGGCTACGGACTTGGAAGCGGGA
TTTCCCTATTTATTGCCACTAACATTTGCGAGAATATTATTTGGAAGGCG
TTCAGTCCCACGACGATCAACACGGGACGAGGAACGGAGTTCGAGGGGGC
GATTATCGCCTTGTTCCATCTGTTGATTACCCGAAGCGATAAAGCGCGTG
CCTTGAAGGAAGCTTTCTATCGTCAAAACCTGCCAAATATCACCAATCTA
CTCGCAACGGTTTTAGTCTTCATCATCGTCATCTACTTTCAAGGCTGGCG
TGTCGACCTCCCCGTCAAGTCCCAGCGTTATCGCGGCCAGCAAGGCACCT
ACCCCATAAAGCTCTTCTACACGTCGAACATGCCTATCATCCTCCAAACC
GCCTTGGTATCCAACCTGTACTTCCTCTCACAGCTTCTCCACAAGCGTTT
CAGCGGGAACATCCTGGTGCGTCTCCTCGGTCGATGGCAGGAGGTCGAAG
GCCAGCAAGGGCAGTCCGTGCCTGTCGGTGGAATTGCTTATTACATCTCC
CCCCCTCATTCCATGAGTGAAATTCTGTCCGATCCCTTTCATGCCATCTT
CTACCTGGTGTTTATTTTGTCTTCGTGTGCGTTGTTTTCCAAGACCTGGA
TTGAGGTGTCCGGGTCCAGTGCGAAGGACGTGGCGAAGCAGCTCCGCGAC
TCCAAGATGGTGATGAAGGGGCACCGTGACTCTGCCCTTGTGCATGAATT
GAATCGTTACATTCCCGTGGCGGCGGCCTTCGGTGGCATGTGTATTGGCG
CCCTGACGGTGGTGGCTGATTTCCTTGGGGCGATTGGCTCGGGGACCGGC
ATCTTGCTGGCTGTGACGATTATTTACCAGTACTACGAGATGTTTGTCTC
GCAGACGGCCAACCCGGATGCTGGGTTTTAAGATGAAAGTGCAGAGAGAG
AAGCAGGAGGTTAGAGAGGCTGGGGGTAGGCATAAAAGAGAGGAAGGAGA
AAGAGGTGTGGTGAGCCAAGCTTCCTTAAGGAGAGGGAATGCGTCGTGAG
AGAAAGGGCAAGGGGAGGAGATGAGTGAACGGCGGCAGAAAGAAGGGGAG
AGATAGAGAACAGAAAACATGGATGGAGAAATGAAATGTTACTTGCTTTC
AATCGAAAGTGAAGGAGAGAAGAGAATGACGGATTGGTTGGGAGAGATTT
TGTGTGCGTGTGGCTGATGATGAGAGGCATGCAGCTAAGTTGACCCTTGA
GAGACCTCATGCTGAGGAAAGGGAAGGAGGGAGGGGAAAAGGATAGAGAC
TGGATAATAGGGAAAAGGCTGCCAGGAAGCTGTTGTAGACGGACCGGTTT
TCTTGGGCAGGCACTAACCATCAGACATCAGAACGAACGGGTGAAAGAAA
TATTAACTCAACCAAAAAAATAAGTGGAGAAGCGGTCAAGAGCACAAAAG
CAAGACAAACTGACTTCCAAAAACGCGTTTGAAAAACGGAGAGGAAGAAA
AGGACGAGATCTCAAG back to topCoding sequence (CDS) from alignment at chr14:545940..548905- >NO14G01770.1 ID=NO14G01770.1|Name=NO14G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr14:545940..548905- (Nannochloropsis oceanica)
ATGGTCCGCTTCTTGCACCTCATTCGCCCGGTGCTCTGCATCGTCCCTGA
GGTGGCAGCACCTGTGGATAGGAAGATTCCGTTCCGTGAGAAGGTCCTGT
GGACGGTCGTTACCCTCTTCATCTTCCTAGTCTGTTGTCAGATTCCGATT
TACGGCGTGCAGTCCGCCAAGTCCTCCGACCCCTTCTACTGGATGCGCGT
CATCTTGGCGTCTAATAGAGGCACGCTGATGGAGCTTGGCATCTCCCCCA
TCGTCACTTCCGGTCTGGTCATGCAGCTCCTGGCTGGCTCCCGCATTATT
GAGGTCAACCAGTCTTTGAAGGAAGATCGTGCCCTCTTTTCGGGCGCGCA
GAAGTTGTTCGGGATTTTGATCACGATTGGTGAGGCAGTCGCATACGTTT
TTTCTGGCATGTATGGTGACTTGAACTCGCTTGGGTGGGGAAATGCGATT
TTGATCATTGCCCAGTTGTTCATTGCGGGGATGATTGTGATCACGCTGGA
TGAGTTACTGCAGAAGGGCTACGGACTTGGAAGCGGGATTTCCCTATTTA
TTGCCACTAACATTTGCGAGAATATTATTTGGAAGGCGTTCAGTCCCACG
ACGATCAACACGGGACGAGGAACGGAGTTCGAGGGGGCGATTATCGCCTT
GTTCCATCTGTTGATTACCCGAAGCGATAAAGCGCGTGCCTTGAAGGAAG
CTTTCTATCGTCAAAACCTGCCAAATATCACCAATCTACTCGCAACGGTT
TTAGTCTTCATCATCGTCATCTACTTTCAAGGCTGGCGTGTCGACCTCCC
CGTCAAGTCCCAGCGTTATCGCGGCCAGCAAGGCACCTACCCCATAAAGC
TCTTCTACACGTCGAACATGCCTATCATCCTCCAAACCGCCTTGGTATCC
AACCTGTACTTCCTCTCACAGCTTCTCCACAAGCGTTTCAGCGGGAACAT
CCTGGTGCGTCTCCTCGGTCGATGGCAGGAGGTCGAAGGCCAGCAAGGGC
AGTCCGTGCCTGTCGGTGGAATTGCTTATTACATCTCCCCCCCTCATTCC
ATGAGTGAAATTCTGTCCGATCCCTTTCATGCCATCTTCTACCTGGTGTT
TATTTTGTCTTCGTGTGCGTTGTTTTCCAAGACCTGGATTGAGGTGTCCG
GGTCCAGTGCGAAGGACGTGGCGAAGCAGCTCCGCGACTCCAAGATGGTG
ATGAAGGGGCACCGTGACTCTGCCCTTGTGCATGAATTGAATCGTTACAT
TCCCGTGGCGGCGGCCTTCGGTGGCATGTGTATTGGCGCCCTGACGGTGG
TGGCTGATTTCCTTGGGGCGATTGGCTCGGGGACCGGCATCTTGCTGGCT
GTGACGATTATTTACCAGTACTACGAGATGTTTGTCTCGCAGACGGCCAA
CCCGGATGCTGGGTTTTAA back to top
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