NO14G01360.1, NO14G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01360.1
Unique NameNO14G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1178
Alignment locationchr14:437951..439634 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:437951..439634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01360.1 vs.
Match: XP_024586123.1 (NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Plasmopara halstedii]; CEG49754.1 NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Plasmopara halstedii])

HSP 1 Score: 107.5 bits (267), Expect = 5.900e-20
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 0 
Query:  118 VASYMGKDKTPKNPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLL--AADTETPRKYKNKKTVAEKFFSNTLNPDD 237
            VA+      +  +P V LYR I+K++PRVLT+YD  + P+EAR  VQ LFR+++ V DP IVDML+ K  MELEETLMQWKQK HLL LL  A     P+   +     EKFF+   + +D
Sbjct:    5 VAAEKASAASTASPAVTLYRYITKQVPRVLTLYDISMEPSEARLAVQALFREHAEVKDPRIVDMLITKANMELEETLMQWKQKVHLLTLLERAQTLRQPKLVNSVDQSLEKFFAGIDDEED 125
The following BLAST results are available for this feature:
BLAST of NO14G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024586123.15.900e-2048.76NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01360NO14G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01360.1NO14G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01360.1.cds1NO14G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01360.1.cds2NO14G01360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01360.1.cds3NO14G01360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01360.1 ID=NO14G01360.1|Name=NO14G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp
TGTATGTGGGGGAGGAGTGGAGTGGGGGTGGGTGTGTAATGAGGGCTTAC
GAAAGGGATGATGGGCGAAAAGCCAGGGCCGGGGACAGCCCCTTGTGTAC
AGCGTCGTCGAGGCATTCTTCTAGTCGAGGCGTGTGATGGGACTGGTGCG
TTGTGTAAGAGAGAGAGCAAGAAGTGGGGTGGTAGGCTTGGTTCAGTGAT
GTGTTGGAAGCGAGAGTAGTGGCTTAGAAAAACATGGCGACACCGCAGAG
GTCCGCTCCACCATAAAGCGCACATGTGCCCCGACATGGAATATCCCCCG
CTACGGTGAGTTGTGGGTGGCAGCTTGATGTGGGGTGAGGAAGCGGAACA
CGGTCCTTCTTCTCTCTCGAGCGACGTTGGTGTGTCGGGTGTGCGAAGAC
TCTTTTTGGGAAAAGGGGATGATAAGGCATGTGATGCTTTTGGCGCCGTT
GCTACTCCCCAACCAGTCAACCAGGCATCTTTGATAAAGCATGTGAGCTT
GGCGGCCATGTATCATCTGCAGTGTTTGACATGGGGAACCCTGAGGTTTA
ACGCGGGGGTCTGCCAGCGAAGTATCAACAAGACAAGTCTTGAGCAGCAA
GAGATGCGAATAGATCACTCACTCCAACCTCGCCATGCCGCCACACTACT
ACAGGCCGCAGCCATGGCTTTCAAGGCAGTGGCAAGCTACATGGGCAAGG
ATAAGACGCCCAAAAATCCGGTGGTACAGCTGTACCGCACCATCTCTAAG
GAGTTGCCCCGTGTGCTCACCATCTACGATGCGGACCTGGCCCCTGCTGA
GGCGCGCGCCAAAGTCCAAAATCTCTTCCGCAAGAACTCCCACGTGGGCG
ACCCGGTGATTGTGGACATGCTGGTCAAAAAGGGTTATATGGAATTAGAA
GAAACGTTAATGCAATGGAAACAGAAAACGCATTTGCTTCGGTTGCTGGC
CGCAGACACAGAGACCCCGCGTAAGTACAAGAACAAGAAGACCGTGGCCG
AGAAGTTTTTTAGCAACACGTTGAATCCCGACGATTGAGTGCAATGCTAT
GGGGTAGGAGGTTGGATGGGATGAACAAGAGTTGAAATCCGTGTACGAAG
AGAATTTACAAGATTACGATGACAGAGGAAGAAAAGACAACGATATTTAC
ATATACAATATAATACATGTTTTTCCAG
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protein sequence of NO14G01360.1

>NO14G01360.1-protein ID=NO14G01360.1-protein|Name=NO14G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MWGEEAEHGPSSLSSDVGVSGVRRLFLGKGDDKACDAFGAVATPQPVNQA
SLIKHVSLAAMYHLQCLTWGTLRFNAGVCQRSINKTSLEQQEMRIDHSLQ
PRHAATLLQAAAMAFKAVASYMGKDKTPKNPVVQLYRTISKELPRVLTIY
DADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQK
THLLRLLAADTETPRKYKNKKTVAEKFFSNTLNPDD*
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mRNA from alignment at chr14:437951..439634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01360.1 ID=NO14G01360.1|Name=NO14G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp|location=Sequence derived from alignment at chr14:437951..439634+ (Nannochloropsis oceanica)
TGTATGTGGGGGAGGAGTGGAGTGGGGGTGGGTGTGTAATGAGGGCTTAC
GAAAGGGATGATGGGCGAAAAGCCAGGGCCGGGGACAGCCCCTTGTGTAC
AGCGTCGTCGAGGCATTCTTCTAGTCGAGGCGTGTGATGGGACTGGTGCG
TTGTGTAAGAGAGAGAGCAAGAAGTGGGGTGGTAGGCTTGGTTCAGTGAT
GTGTTGGAAGCGAGAGTAGTGGCTTAGAAAAACATGGCGACACCGCAGAG
GTCCGCTCCACCATAAAGCGCACATGTGCCCCGACATGGAATATCCCCCG
CTACGGTGAGTTGTGGGTGGCAGCTTGATGTGGGGTGAGGAAGCGGAACA
CGGTCCTTCTTCTCTCTCGAGCGACGTTGGTGTGTCGGGTGTGCGAAGAC
TCTTTTTGGGAAAAGGGGATGATAAGGCATGTGATGCTTTTGGCGCCGTT
GCTACTCCCCAACCAGTCAACCAGGCATCTTTGATAAAGCATGTGAGCTT
GGCGGCCATGTATCATCTGCAGTGTTTGACATGGGGAACCCTGAGGTTTA
ACGCGGGGGTCTGCCAGCGAAGTATCAACAAGACAAGTCTTGAGCAGCAA
GAGATGCGAATAGATCACTCACTCCAACCTCGCCATGCCGCCACACTACT
ACAGGCCGCAGCCATGGCTTTCAAGGCAGTGGCAAGCTACATGGGCAAGG
ATAAGACGCCCAAGTAGGTGGATATCGAGTGTGTGGGTGGGAGGAATCAT
CTATGGTGGGGTAGAGAGCTTGGAGCAACGGCATCATCATCGTTACGGCC
CTCCTTGGTCTGGTAAGCGTAGCCCCGACTCACATGCTTCTACGGACGTG
CATATTTATACAGAAATCCGGTGGTACAGCTGTACCGCACCATCTCTAAG
GAGTTGCCCCGTGTGCTCACCATCTACGATGCGGACCTGGCCCCTGCTGA
GGTACGTCTGAAGGCCTGCGTGAGGCGGGGCGGGATAGAATGAATAACGA
CGATGGTGTGTCGTGTGCATTGGGAGGGGAGATGTTTCTTATAGAGCTGT
GTATGTTTGAAGGTCGCTGTAGAGTCGAGAATACCTGCCCGCGGGCTTGG
CGTGGCCGCGCAGCGCTGTGCATTTCTTCCACTCGAGCAACACGACCGAC
AGGTGCACTTCCTATCGGAGGCGCACCACCAACCGCATTCTATCCTCTTT
CGCGCATCAAATACCTCTCATACGGCTTTCAATCGGTTGTTCAGATCGAT
TCTCTTATTAATCACTTTCTCTGCTACCCCATATCCAAATACTCACACCC
TTCGCAGGCGCGCGCCAAAGTCCAAAATCTCTTCCGCAAGAACTCCCACG
TGGGCGACCCGGTGATTGTGGACATGCTGGTCAAAAAGGGTTATATGGAA
TTAGAAGAAACGTTAATGCAATGGAAACAGAAAACGCATTTGCTTCGGTT
GCTGGCCGCAGACACAGAGACCCCGCGTAAGTACAAGAACAAGAAGACCG
TGGCCGAGAAGTTTTTTAGCAACACGTTGAATCCCGACGATTGAGTGCAA
TGCTATGGGGTAGGAGGTTGGATGGGATGAACAAGAGTTGAAATCCGTGT
ACGAAGAGAATTTACAAGATTACGATGACAGAGGAAGAAAAGACAACGAT
ATTTACATATACAATATAATACATGTTTTTCCAG
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Coding sequence (CDS) from alignment at chr14:437951..439634+

>NO14G01360.1 ID=NO14G01360.1|Name=NO14G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr14:437951..439634+ (Nannochloropsis oceanica)
ATGTGGGGTGAGGAAGCGGAACACGGTCCTTCTTCTCTCTCGAGCGACGT
TGGTGTGTCGGGTGTGCGAAGACTCTTTTTGGGAAAAGGGGATGATAAGG
CATGTGATGCTTTTGGCGCCGTTGCTACTCCCCAACCAGTCAACCAGGCA
TCTTTGATAAAGCATGTGAGCTTGGCGGCCATGTATCATCTGCAGTGTTT
GACATGGGGAACCCTGAGGTTTAACGCGGGGGTCTGCCAGCGAAGTATCA
ACAAGACAAGTCTTGAGCAGCAAGAGATGCGAATAGATCACTCACTCCAA
CCTCGCCATGCCGCCACACTACTACAGGCCGCAGCCATGGCTTTCAAGGC
AGTGGCAAGCTACATGGGCAAGGATAAGACGCCCAAAAATCCGGTGGTAC
AGCTGTACCGCACCATCTCTAAGGAGTTGCCCCGTGTGCTCACCATCTAC
GATGCGGACCTGGCCCCTGCTGAGGCGCGCGCCAAAGTCCAAAATCTCTT
CCGCAAGAACTCCCACGTGGGCGACCCGGTGATTGTGGACATGCTGGTCA
AAAAGGGTTATATGGAATTAGAAGAAACGTTAATGCAATGGAAACAGAAA
ACGCATTTGCTTCGGTTGCTGGCCGCAGACACAGAGACCCCGCGTAAGTA
CAAGAACAAGAAGACCGTGGCCGAGAAGTTTTTTAGCAACACGTTGAATC
CCGACGATTGA
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Synonyms
Publications