NO14G01120.1, NO14G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01120.1
Unique NameNO14G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length975
Alignment locationchr14:376226..377560 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:376226..377560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01120.1 vs.
Match: EWM24706.1 (hypothetical protein Naga_100076g8 [Nannochloropsis gaditana])

HSP 1 Score: 422.9 bits (1086), Expect = 8.800e-115
Identity = 220/317 (69.40%), Postives = 257/317 (81.07%), Query Frame = 0 
Query:    5 LSKLALLAAALSARTCCHAFVPPTSPLGQLSRQHPSSAAPTFTSPRSSITIMLSSPFSIMKSEPASPEYSLLKQSQVLSAATGRPTSLADAFPSGGKKTIVAFFTHWGDFNSFEYAQKILHNLPQLDRAGVNVVAVGIGSVASAQEFATLVGGFPLDRLYCDPSAAAYGQFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLRGYIGDKAADASWTSDYLKGRSQGGQGLVDKSAFDVLGTEGARPFEVATVRLQNMISIIPNWQRLAPADKSLITQQGGSLVFEGKMLTKIYRDKGILTYTDMDDLLRTVGV 322
            +S+L LL+  L+A T C AFV    P     R     A+ +       ++ M SS FSIM+   +SPEY+LLK+S VLSA TGR  +L D FP+GGK TIVAF THWGDFNSFEYAQK+LH LP+L+RA VNVVAVGIG+VA+AQ+FA+LVGGFPLDRLY D SAA+YG+FGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVL GY+GDK ADASWT DYLK   + GQGLVDKSAFDVLG EGARPFEVATVRLQNM++I+PNW+ L P +K LITQQGGSLVFEG+ L ++YRD+GILTYTD++DLLRTVG+
Sbjct:    2 VSRLFLLSITLAAVTACQAFVIRNLPSHGQVRDSKFGASSSKRGGHGRLS-MQSSSFSIMQ---SSPEYALLKESNVLSAKTGRSVALGDVFPTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLK---KEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDRGILTYTDVEDLLRTVGM 311
The following BLAST results are available for this feature:
BLAST of NO14G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24706.18.800e-11569.40hypothetical protein Naga_100076g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01120NO14G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01120.1NO14G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01120.1.cds1NO14G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01120.1.cds2NO14G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01120.1.cds3NO14G01120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01120.1 ID=NO14G01120.1|Name=NO14G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
ATGGCCTCTTGTCTTTCAAAGTTAGCCTTGCTGGCGGCTGCCCTGTCTGC
AAGAACATGCTGCCATGCATTTGTCCCTCCGACCTCTCCTCTTGGCCAGC
TCAGCAGACAGCACCCCTCCTCCGCGGCACCCACCTTCACCAGCCCACGC
TCCAGCATCACAATCATGCTGTCCTCCCCCTTTTCTATCATGAAGTCTGA
ACCCGCGTCACCGGAATACTCGCTACTGAAACAAAGCCAGGTCTTGAGCG
CCGCCACGGGGAGGCCAACTTCTCTGGCCGATGCCTTTCCCTCAGGAGGG
AAGAAGACGATCGTGGCATTTTTTACGCATTGGGGAGACTTTAATAGCTT
CGAATACGCCCAAAAGATTCTTCATAACCTCCCTCAGCTGGACCGCGCGG
GCGTGAACGTTGTCGCTGTCGGGATCGGTTCTGTGGCCTCGGCGCAAGAG
TTCGCGACATTGGTGGGGGGCTTTCCCCTAGATCGTCTGTATTGCGACCC
GTCCGCCGCAGCCTACGGTCAATTCGGCTTCTCCCGTGGCTTTGCCGCCG
ACCTTCCCGTCAATCCTTATTTGAAACTCCTGCCAATGCTCGCTGGCATC
GGCTCCCCAGGCACTCTCCAAGCGGTGTTGCGGGGGTACATCGGAGATAA
AGCCGCGGATGCCTCTTGGACGTCCGATTACTTGAAGGGAAGAAGCCAGG
GAGGACAGGGTTTGGTCGACAAGAGTGCGTTTGACGTGCTGGGGACAGAG
GGGGCCCGGCCTTTCGAAGTGGCGACGGTGAGATTGCAGAACATGATATC
GATAATCCCGAACTGGCAACGGCTTGCTCCTGCAGATAAATCCTTGATCA
CGCAGCAGGGGGGAAGCTTGGTGTTTGAGGGCAAAATGTTAACCAAGATT
TATAGAGATAAGGGCATCTTAACGTACACGGACATGGACGATTTGTTGAG
AACGGTGGGGGTGGGAGGGAGTTGA
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protein sequence of NO14G01120.1

>NO14G01120.1-protein ID=NO14G01120.1-protein|Name=NO14G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MASCLSKLALLAAALSARTCCHAFVPPTSPLGQLSRQHPSSAAPTFTSPR
SSITIMLSSPFSIMKSEPASPEYSLLKQSQVLSAATGRPTSLADAFPSGG
KKTIVAFFTHWGDFNSFEYAQKILHNLPQLDRAGVNVVAVGIGSVASAQE
FATLVGGFPLDRLYCDPSAAAYGQFGFSRGFAADLPVNPYLKLLPMLAGI
GSPGTLQAVLRGYIGDKAADASWTSDYLKGRSQGGQGLVDKSAFDVLGTE
GARPFEVATVRLQNMISIIPNWQRLAPADKSLITQQGGSLVFEGKMLTKI
YRDKGILTYTDMDDLLRTVGVGGS*
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mRNA from alignment at chr14:376226..377560+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01120.1 ID=NO14G01120.1|Name=NO14G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at chr14:376226..377560+ (Nannochloropsis oceanica)
ATGGCCTCTTGTCTTTCAAAGTTAGCCTTGCTGGCGGCTGCCCTGTCTGC
AAGAACATGCTGCCATGCATTTGTCCCTCCGACCTCTCCTCTTGGCCAGC
TCAGCAGACAGCACCCCTCCTCCGCGGCACCCACCTTCACCAGCCCACGC
TCCAGCATCACAATCATGCTGTCCTCCCCCTTTTCTATCATGAAGTCTGA
ACCCGCGTCACCGGAATACTCGCTACTGAAACAAAGCCAGGTCTTGAGCG
CCGCCACGGGGAGGCCAACTTCTCTGGCCGATGCCTTTCCCTCAGGAGGG
AAGAAGACGATCGTGGCATTTTTTACGCATTGGGGAGACTTTAATAGGTG
CGTATACGATGTGGGGAGAGGAAGAGAAAGAAAAAGGATGGGTCTTTTAA
TTAAACTGAATCAGAAATAAGGTGCGTGGTGAATCAGCTCATTTTACATT
CGCACATCATTTCATCTCTCGTTCATCTCTCGCTCTTGGATTTCCTCCGC
CCCTTTATCTCTCCCTTTATTCAATCCCTCCTTTTCAATATGTTCAGCTT
CGAATACGCCCAAAAGATTCTTCATAACCTCCCTCAGCTGGACCGCGCGG
GCGTGAACGTTGTCGCTGTCGGGATCGGTTCTGTGGCCTCGGCGCAAGAG
TTCGCGACATTGGTGGGGGGCTTTCCCCTAGGTACGTGACTGCCTTGCTT
CGTTGAAGCAGAAGCCTGTTTAATTAGTTTGAAAATCATTTTCCCTTTTT
ACCCTTCGGTGCTGCTGCTGCTGTACTGGAGATCTCTTGCCCAAGCACCA
AATACATTATTAAAATTTTGACCCCTCGCCCAAAAAAACAGATCGTCTGT
ATTGCGACCCGTCCGCCGCAGCCTACGGTCAATTCGGCTTCTCCCGTGGC
TTTGCCGCCGACCTTCCCGTCAATCCTTATTTGAAACTCCTGCCAATGCT
CGCTGGCATCGGCTCCCCAGGCACTCTCCAAGCGGTGTTGCGGGGGTACA
TCGGAGATAAAGCCGCGGATGCCTCTTGGACGTCCGATTACTTGAAGGGA
AGAAGCCAGGGAGGACAGGGTTTGGTCGACAAGAGTGCGTTTGACGTGCT
GGGGACAGAGGGGGCCCGGCCTTTCGAAGTGGCGACGGTGAGATTGCAGA
ACATGATATCGATAATCCCGAACTGGCAACGGCTTGCTCCTGCAGATAAA
TCCTTGATCACGCAGCAGGGGGGAAGCTTGGTGTTTGAGGGCAAAATGTT
AACCAAGATTTATAGAGATAAGGGCATCTTAACGTACACGGACATGGACG
ATTTGTTGAGAACGGTGGGGGTGGGAGGGAGTTGA
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Coding sequence (CDS) from alignment at chr14:376226..377560+

>NO14G01120.1 ID=NO14G01120.1|Name=NO14G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr14:376226..377560+ (Nannochloropsis oceanica)
ATGGCCTCTTGTCTTTCAAAGTTAGCCTTGCTGGCGGCTGCCCTGTCTGC
AAGAACATGCTGCCATGCATTTGTCCCTCCGACCTCTCCTCTTGGCCAGC
TCAGCAGACAGCACCCCTCCTCCGCGGCACCCACCTTCACCAGCCCACGC
TCCAGCATCACAATCATGCTGTCCTCCCCCTTTTCTATCATGAAGTCTGA
ACCCGCGTCACCGGAATACTCGCTACTGAAACAAAGCCAGGTCTTGAGCG
CCGCCACGGGGAGGCCAACTTCTCTGGCCGATGCCTTTCCCTCAGGAGGG
AAGAAGACGATCGTGGCATTTTTTACGCATTGGGGAGACTTTAATAGCTT
CGAATACGCCCAAAAGATTCTTCATAACCTCCCTCAGCTGGACCGCGCGG
GCGTGAACGTTGTCGCTGTCGGGATCGGTTCTGTGGCCTCGGCGCAAGAG
TTCGCGACATTGGTGGGGGGCTTTCCCCTAGATCGTCTGTATTGCGACCC
GTCCGCCGCAGCCTACGGTCAATTCGGCTTCTCCCGTGGCTTTGCCGCCG
ACCTTCCCGTCAATCCTTATTTGAAACTCCTGCCAATGCTCGCTGGCATC
GGCTCCCCAGGCACTCTCCAAGCGGTGTTGCGGGGGTACATCGGAGATAA
AGCCGCGGATGCCTCTTGGACGTCCGATTACTTGAAGGGAAGAAGCCAGG
GAGGACAGGGTTTGGTCGACAAGAGTGCGTTTGACGTGCTGGGGACAGAG
GGGGCCCGGCCTTTCGAAGTGGCGACGGTGAGATTGCAGAACATGATATC
GATAATCCCGAACTGGCAACGGCTTGCTCCTGCAGATAAATCCTTGATCA
CGCAGCAGGGGGGAAGCTTGGTGTTTGAGGGCAAAATGTTAACCAAGATT
TATAGAGATAAGGGCATCTTAACGTACACGGACATGGACGATTTGTTGAG
AACGGTGGGGGTGGGAGGGAGTTGA
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Synonyms
Publications