NO14G00900.1, NO14G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00900.1
Unique NameNO14G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1965
Alignment locationchr14:306411..308750 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:306411..308750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00900.1 vs.
Match: EWM24729.1 (t-complex protein 1 subunit gamma [Nannochloropsis gaditana])

HSP 1 Score: 994.2 bits (2569), Expect = 1.600e-286
Identity = 499/538 (92.75%), Postives = 522/538 (97.03%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNISAAKAVADIIRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLAQAEQFLHRNIHPTQIVAGYSKALQEAMLVCNSLAKPIDVKDKKALSQIVSACVGTKFSSRWGPFMVDLAVESVLKVVREVGPEGGGEGGVGNYKECDVKRYVRVEKIPGGELGESKVIDGVMFNKDVTHSKMRRRIERPRILLLDCPLEYKKGESQTNVEVKEEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGATIVSRPDEIQEGDIGTGCGLFEVRKIGDEYFVFLEACDQPKACTVLLRGASKDVLNEIERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARAASKIEGVQQFPFKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHTQGPSTWGIDGEKGVLVQMEDLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 539
            MMNAPVMVLNANTKRETGRTAQLGNI+AAKAV+DI+RTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIIL GEMLAQAE FLHRNIHPTQIVAGYSKALQEA+ VCN+LAKPIDV DK+ALSQIVSACVGTKFSSRWGPFMVDLAV+SVLKVVR+VG EGG EGG   YKECDVKRYVRVEKIPGGELG+SKVIDGVMFNKDVTHSKMRRRIE+PRILLLDCPLEYKKGESQTNVEVK+EEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGA IVSRPDEIQEGD+GTGCGLFEVRKIGDEYF FLE C+QP+ACTVLLRG SKDVLNE+ERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARA++++EGVQQ+P+KAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKH QGP+TWGIDGEKG+LV ME LGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK
Sbjct:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGG---YKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
The following BLAST results are available for this feature:
BLAST of NO14G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24729.11.600e-28692.75t-complex protein 1 subunit gamma [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00900NO14G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00900.1NO14G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00900.1.cds1NO14G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00900.1.cds2NO14G00900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00900.1.cds3NO14G00900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00900.1 ID=NO14G00900.1|Name=NO14G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
GTCGTTCCGAGCCGCTCGGTGCTCCCTAGCCCCTCTTTTTGTCTGTCTGG
GATTCACCATTCCGAAAGATTTTGCATATACCACCGCCTCTCCCAGGCGC
ATATCTGACTGCGTGCTCCTTGCCCACGTATCGGCTTGAGTGATGCTGCT
AGCCGGTGCTTGCCGGCGTTGGACACTCGCCCATCCCGATTTTGGAGAAG
GGCTTCCATCCACCGCAGCCCGTCACATCATCATCCTTGCTGCTTCTTTC
GGTGTGTCCCCTCTTTTCAGTCTTCCCAAATTCTCTTGCACAACACACCA
CAGGCGATAGTAGCAGGAGACGAAGCAGGATAATAACCCCGCGTAGCCAT
GATGAACGCCCCGGTGATGGTATTGAACGCCAACACCAAGCGCGAAACGG
GCCGCACCGCCCAGCTGGGCAATATTTCTGCAGCAAAAGCTGTGGCTGAT
ATTATCAGAACGACACTGGGGCCTAGGGCGATGCTTAAGATGCTATTGGA
TCCGATGGGAGGCATCGTGATAACGAATGATGGGCATTGTATTTTGAGGG
AGGTCGATGTCTCGCACCCCGCAGCGAAGAGCATGATTGAGCTGAGTAGG
GCGCAGGATGAGGAAGTGGGGGATGGAACGACGAGCGTGATTATTTTGAC
AGGTGAAATGCTCGCTCAAGCCGAGCAATTTCTGCATCGCAACATCCACC
CCACGCAAATCGTTGCAGGTTACTCCAAGGCCCTCCAAGAAGCTATGCTC
GTTTGCAACTCCCTGGCCAAACCCATTGACGTGAAGGACAAGAAAGCGCT
TTCTCAGATCGTGTCTGCGTGCGTCGGCACCAAGTTCTCGTCTCGCTGGG
GTCCGTTCATGGTCGACTTAGCCGTGGAAAGTGTATTGAAGGTCGTGAGA
GAGGTGGGGCCCGAGGGAGGGGGGGAGGGAGGGGTGGGGAACTACAAGGA
GTGTGACGTCAAGCGGTATGTGAGAGTGGAGAAAATCCCGGGGGGGGAGC
TGGGGGAGAGTAAGGTCATTGATGGCGTTATGTTCAACAAGGACGTGACG
CACTCGAAGATGAGGCGAAGGATTGAGCGGCCGCGGATCCTCTTGTTGGA
CTGTCCGTTGGAGTACAAGAAGGGGGAGAGCCAGACGAATGTGGAGGTGA
AGGAGGAGGAGGACTGGAACACCCTCTTGAGGATGGAGGAAGAATTCATT
GAGAAGATGTGCGCAGAGATTGTGGCGTTTCGACCCGATATTGTCATAAC
GGAGAAGGGGGTGAGTGACCTGGCGCAGCATTACCTGTTGAAAGCGGGGG
TGACGGCGTTTAGGCGTGTGCGGAAAAGCGACAACAACCGGATAGCTCGA
GCTGTGGGGGCGACCATTGTCTCTCGACCGGACGAGATCCAAGAGGGTGA
TATTGGCACAGGTTGCGGTTTGTTCGAAGTCCGCAAGATCGGCGACGAAT
ATTTTGTATTTTTGGAAGCTTGCGACCAGCCCAAGGCGTGCACGGTGCTC
TTGCGCGGGGCTTCCAAAGATGTCCTGAACGAGATCGAGCGTAATCTCCA
AGACGCCCTGCAAGTCGTGCGAAACTTGGTCTTTGAGTCCAAACTCCTCC
CGGGGGGGGGTGCGACGGAGATGGCCGTTGGACAGGCCTTGGCGCGTGCA
GCGTCGAAGATCGAGGGTGTTCAACAGTTTCCGTTCAAAGCCGTTGGGGA
AGCGCTCGAGGTGATCCCGCGGACGCTCGCGCAGAATTGTGGGACGAACG
TCCTGCGAATCATGACTCAGTTGAGGGCGAAGCATACGCAAGGCCCAAGC
ACCTGGGGTATCGATGGGGAGAAGGGCGTGTTGGTCCAGATGGAGGATTT
GGGTGTGTGGGAACCATATGCCGTTAAGGTGCAGACGATTAAGACGGCAG
TGGAGGCGGCGTGCATGTTGTTGAGGATCGATGATGTGGTGAGTGGAATG
AAGAAGAAGAAGTAG
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protein sequence of NO14G00900.1

>NO14G00900.1-protein ID=NO14G00900.1-protein|Name=NO14G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MMNAPVMVLNANTKRETGRTAQLGNISAAKAVADIIRTTLGPRAMLKMLL
DPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIIL
TGEMLAQAEQFLHRNIHPTQIVAGYSKALQEAMLVCNSLAKPIDVKDKKA
LSQIVSACVGTKFSSRWGPFMVDLAVESVLKVVREVGPEGGGEGGVGNYK
ECDVKRYVRVEKIPGGELGESKVIDGVMFNKDVTHSKMRRRIERPRILLL
DCPLEYKKGESQTNVEVKEEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVI
TEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGATIVSRPDEIQEG
DIGTGCGLFEVRKIGDEYFVFLEACDQPKACTVLLRGASKDVLNEIERNL
QDALQVVRNLVFESKLLPGGGATEMAVGQALARAASKIEGVQQFPFKAVG
EALEVIPRTLAQNCGTNVLRIMTQLRAKHTQGPSTWGIDGEKGVLVQMED
LGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK*
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mRNA from alignment at chr14:306411..308750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00900.1 ID=NO14G00900.1|Name=NO14G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp|location=Sequence derived from alignment at chr14:306411..308750- (Nannochloropsis oceanica)
GTCGTTCCGAGCCGCTCGGTGCTCCCTAGCCCCTCTTTTTGTCTGTCTGG
GATTCACCATTCCGAAAGATTTTGCATATACCACCGCCTCTCCCAGGCGC
ATATCTGACTGCGTGCTCCTTGCCCACGTATCGGCTTGAGTGATGCTGCT
AGCCGGTGCTTGCCGGCGTTGGACACTCGCCCATCCCGATTTTGGAGAAG
GGCTTCCATCCACCGCAGCCCGTCACATCATCATCCTTGCTGCTTCTTTC
GGTGTGTCCCCTCTTTTCAGTCTTCCCAAATTCTCTTGCACAACACACCA
CAGGCGATAGTAGCAGGAGACGAAGCAGGATAATAACCCCGCGTAGCCAT
GATGAACGCCCCGGTGATGGTATTGAGTAAGTTCTTTTCCCCTTTTCCTT
CTCCACCTCCTCAAATAATAGAACAAATTCGTAGGCTCCCCCCCTTCCCT
TCGCACCACTCAGACCACCTCCCTCCCTCCATCGCTTCCGTTCACGCGTC
CATCACTCGTGCTGAGATTGACATGGATAAGCTATGCCAGTGGTTGATGT
GCGGTGAACTGTAGGTCCACCCATTCTCGTCCCCTCTCACCCCCTCCCTC
TCTCCCTCCCTCCGCTCCTTCCTAAGACGCCAACACCAAGCGCGAAACGG
GCCGCACCGCCCAGCTGGGCAATATTTCTGCAGCAAAAGCTGTGGCTGAT
ATTATCAGAACGACACTGGGGCCTAGGGCGATGCTTAAGATGCTATTGGA
TCCGATGGGAGGCATCGTGATAACGAATGATGGGCATTGTATTTTGAGGG
AGGTCGATGTCTCGCACCCCGCAGCGAAGAGCATGATTGAGCTGAGTAGG
GCGCAGGATGAGGAAGTGGGGGATGGAACGACGAGCGTGATTATTTTGAC
AGGTATGTGTTTTCTTCTCATTTCTTTGTTTTGTTGTAAAGATAGACCGA
CCAACATCCTCCCTCCTCCCTCTCTCCTCCTCTCCTTTCTCCTTCCCACC
CTCCTTCCCACCCTCCTTCCCTCCTAGGTGAAATGCTCGCTCAAGCCGAG
CAATTTCTGCATCGCAACATCCACCCCACGCAAATCGTTGCAGGTTACTC
CAAGGCCCTCCAAGAAGCTATGCTCGTTTGCAACTCCCTGGCCAAACCCA
TTGACGTGAAGGACAAGAAAGCGCTTTCTCAGATCGTGTCTGCGTGCGTC
GGCACCAAGTTCTCGTCTCGCTGGGGTCCGTTCATGGTCGACTTAGCCGT
GGAAAGTGTATTGAAGGTCGTGAGAGAGGTGGGGCCCGAGGGAGGGGGGG
AGGGAGGGGTGGGGAACTACAAGGAGTGTGACGTCAAGCGGTATGTGAGA
GTGGAGAAAATCCCGGGGGGGGAGCTGGGGGAGAGTAAGGTCATTGATGG
CGTTATGTTCAACAAGGACGTGACGCACTCGAAGATGAGGCGAAGGATTG
AGCGGCCGCGGATCCTCTTGTTGGACTGTCCGTTGGAGTACAAGAAGGGG
GAGAGCCAGACGAATGTGGAGGTGAAGGAGGAGGAGGACTGGAACACCCT
CTTGAGGATGGAGGAAGAATTCATTGAGAAGATGTGCGCAGAGATTGTGG
CGTTTCGACCCGATATTGTCATAACGGAGAAGGGGGTGAGTGACCTGGCG
CAGCATTACCTGTTGAAAGCGGGGGTGACGGCGTTTAGGCGTGTGCGGAA
AAGCGACAACAACCGGATAGCTCGAGCTGTGGGGGCGACCATTGTCTCTC
GACCGGACGAGATCCAAGAGGGTGATATTGGCACAGGTTGCGGTTTGTTC
GAAGTCCGCAAGATCGGCGACGAATATTTTGTATTTTTGGAAGCTTGCGA
CCAGCCCAAGGCGTGCACGGTGCTCTTGCGCGGGGCTTCCAAAGATGTCC
TGAACGAGATCGAGCGTAATCTCCAAGACGCCCTGCAAGTCGTGCGAAAC
TTGGTCTTTGAGTCCAAACTCCTCCCGGGGGGGGGTGCGACGGAGATGGC
CGTTGGACAGGCCTTGGCGCGTGCAGCGTCGAAGATCGAGGGTGTTCAAC
AGTTTCCGTTCAAAGCCGTTGGGGAAGCGCTCGAGGTGATCCCGCGGACG
CTCGCGCAGAATTGTGGGACGAACGTCCTGCGAATCATGACTCAGTTGAG
GGCGAAGCATACGCAAGGCCCAAGCACCTGGGGTATCGATGGGGAGAAGG
GCGTGTTGGTCCAGATGGAGGATTTGGGTGTGTGGGAACCATATGCCGTT
AAGGTGCAGACGATTAAGACGGCAGTGGAGGCGGCGTGCATGTTGTTGAG
GATCGATGATGTGGTGAGTGGAATGAAGAAGAAGAAGTAG
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Coding sequence (CDS) from alignment at chr14:306411..308750-

>NO14G00900.1 ID=NO14G00900.1|Name=NO14G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr14:306411..308750- (Nannochloropsis oceanica)
ATGATGAACGCCCCGGTGATGGTATTGAACGCCAACACCAAGCGCGAAAC
GGGCCGCACCGCCCAGCTGGGCAATATTTCTGCAGCAAAAGCTGTGGCTG
ATATTATCAGAACGACACTGGGGCCTAGGGCGATGCTTAAGATGCTATTG
GATCCGATGGGAGGCATCGTGATAACGAATGATGGGCATTGTATTTTGAG
GGAGGTCGATGTCTCGCACCCCGCAGCGAAGAGCATGATTGAGCTGAGTA
GGGCGCAGGATGAGGAAGTGGGGGATGGAACGACGAGCGTGATTATTTTG
ACAGGTGAAATGCTCGCTCAAGCCGAGCAATTTCTGCATCGCAACATCCA
CCCCACGCAAATCGTTGCAGGTTACTCCAAGGCCCTCCAAGAAGCTATGC
TCGTTTGCAACTCCCTGGCCAAACCCATTGACGTGAAGGACAAGAAAGCG
CTTTCTCAGATCGTGTCTGCGTGCGTCGGCACCAAGTTCTCGTCTCGCTG
GGGTCCGTTCATGGTCGACTTAGCCGTGGAAAGTGTATTGAAGGTCGTGA
GAGAGGTGGGGCCCGAGGGAGGGGGGGAGGGAGGGGTGGGGAACTACAAG
GAGTGTGACGTCAAGCGGTATGTGAGAGTGGAGAAAATCCCGGGGGGGGA
GCTGGGGGAGAGTAAGGTCATTGATGGCGTTATGTTCAACAAGGACGTGA
CGCACTCGAAGATGAGGCGAAGGATTGAGCGGCCGCGGATCCTCTTGTTG
GACTGTCCGTTGGAGTACAAGAAGGGGGAGAGCCAGACGAATGTGGAGGT
GAAGGAGGAGGAGGACTGGAACACCCTCTTGAGGATGGAGGAAGAATTCA
TTGAGAAGATGTGCGCAGAGATTGTGGCGTTTCGACCCGATATTGTCATA
ACGGAGAAGGGGGTGAGTGACCTGGCGCAGCATTACCTGTTGAAAGCGGG
GGTGACGGCGTTTAGGCGTGTGCGGAAAAGCGACAACAACCGGATAGCTC
GAGCTGTGGGGGCGACCATTGTCTCTCGACCGGACGAGATCCAAGAGGGT
GATATTGGCACAGGTTGCGGTTTGTTCGAAGTCCGCAAGATCGGCGACGA
ATATTTTGTATTTTTGGAAGCTTGCGACCAGCCCAAGGCGTGCACGGTGC
TCTTGCGCGGGGCTTCCAAAGATGTCCTGAACGAGATCGAGCGTAATCTC
CAAGACGCCCTGCAAGTCGTGCGAAACTTGGTCTTTGAGTCCAAACTCCT
CCCGGGGGGGGGTGCGACGGAGATGGCCGTTGGACAGGCCTTGGCGCGTG
CAGCGTCGAAGATCGAGGGTGTTCAACAGTTTCCGTTCAAAGCCGTTGGG
GAAGCGCTCGAGGTGATCCCGCGGACGCTCGCGCAGAATTGTGGGACGAA
CGTCCTGCGAATCATGACTCAGTTGAGGGCGAAGCATACGCAAGGCCCAA
GCACCTGGGGTATCGATGGGGAGAAGGGCGTGTTGGTCCAGATGGAGGAT
TTGGGTGTGTGGGAACCATATGCCGTTAAGGTGCAGACGATTAAGACGGC
AGTGGAGGCGGCGTGCATGTTGTTGAGGATCGATGATGTGGTGAGTGGAA
TGAAGAAGAAGAAGTAG
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Synonyms
Publications