NO14G00880.1, NO14G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00880.1
Unique NameNO14G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr14:302807..304015 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:302807..304015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00880.1 vs.
Match: EWM24730.1 (asparagine synthase [Nannochloropsis gaditana])

HSP 1 Score: 541.2 bits (1393), Expect = 2.700e-150
Identity = 260/372 (69.89%), Postives = 306/372 (82.26%), Query Frame = 0 
Query:   14 RELLHAAVLDIAQAQFDKLPRPEECIVLFSGGVDSSVSLHLAASLLGVKHAITVLVQDTPASDEPWAEATAENFPGVTHIVLRPTLDELLGQDMPFLVQTIHSFDGMALRNSVCATHGLRHAASLGFKYVLTGDAADELMGGYRFTHRYDDEAWTQQRATMVAKWHFDSSVVGDALGMRVTSPFLHPPFVDFCLKSLRKLDCVGPYSLRVTPSAALEDGVITGKLPLRGAFPELLSSSRRKDPQEIGCGTTMLGAAPWASPPRQGYFDTRIEDAVLASEKARIADEYAIKIRDKEHLAYFHEFEKLFGIIEEVDDEEKKRVTKKVLNVPNKPRPNDDPCPACGFKLDTPTQTFCLVCGHYEETLRFRKQGDK 386
            R+LLH AV DIA+ +F+KL  P++CIVLFSGGVDSS+SLHLAASLLGV+HAITVLVQDTPA+D PWAE T   +  + H++LRPTL ELL +DMPFLV++I SFDGMALRNSVCATH LRHAASLGF YVLTGDAADELMGGYRFTHRYD +AW++QRATMVA+ HFDS  VG ALGMRVTSP+L+ PFVDFCL+ L+K DC+GP++LRV P+A LEDGV+TGKLPLR AFPELLSSSRRKDPQE+GCGTT+LGAAPWA+PPR GYFD+RI+D     EK R+   YA+ +RDKEHLAYF  FE++FG  E+    ++ R  ++ L VP K +  DDPCPAC F L  PTQTFCL CGHY+E LRFR  G K
Sbjct:   15 RQLLHEAVHDIAENEFEKLCDPKKCIVLFSGGVDSSISLHLAASLLGVRHAITVLVQDTPANDAPWAEETPNLYSDIDHVILRPTLAELLEKDMPFLVESIQSFDGMALRNSVCATHALRHAASLGFTYVLTGDAADELMGGYRFTHRYDAKAWSEQRATMVARMHFDSIQVGAALGMRVTSPYLYKPFVDFCLQHLQKADCIGPFALRVAPTAPLEDGVVTGKLPLRRAFPELLSSSRRKDPQEVGCGTTLLGAAPWATPPRPGYFDSRIKDEEFDREKERVLAAYAVTLRDKEHLAYFLVFEEVFGRREDARALKEVRPERR-LEVPGKSQNADDPCPACRFALGAPTQTFCLTCGHYDEALRFRHAGTK 385
The following BLAST results are available for this feature:
BLAST of NO14G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24730.12.700e-15069.89asparagine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00880NO14G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00880.1NO14G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00880.1.cds1NO14G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00880.1 ID=NO14G00880.1|Name=NO14G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ATGTCAGAACCCGATGTAAACAACGCCGCCATTTCAGCCCGGGAGCTCCT
CCATGCCGCCGTTCTGGACATTGCCCAGGCACAATTCGACAAGTTGCCTA
GGCCGGAGGAATGCATCGTCCTTTTCTCAGGCGGGGTGGACTCTTCCGTC
TCGCTTCACCTCGCTGCCTCCTTGCTCGGCGTAAAGCATGCCATCACTGT
GCTTGTGCAGGATACTCCGGCCTCCGATGAGCCTTGGGCCGAGGCCACCG
CAGAAAATTTTCCTGGTGTGACTCATATTGTGCTGCGGCCCACGCTGGAT
GAGCTTTTGGGCCAGGACATGCCGTTTTTGGTGCAAACGATTCATTCGTT
CGACGGGATGGCTTTGCGGAATTCAGTCTGTGCCACGCATGGTCTTCGGC
ACGCGGCCTCCTTGGGATTCAAGTATGTCTTGACAGGCGATGCAGCGGAC
GAATTAATGGGTGGATACCGCTTTACGCACAGATATGATGACGAGGCGTG
GACCCAACAACGCGCTACGATGGTTGCCAAATGGCATTTTGACAGCAGTG
TGGTCGGCGATGCTTTGGGCATGCGCGTCACCTCGCCCTTTCTCCATCCG
CCATTTGTGGACTTCTGTTTGAAAAGTCTCAGAAAACTGGATTGTGTCGG
TCCCTATTCCTTGCGGGTGACTCCTTCCGCAGCCCTGGAGGACGGCGTCA
TCACAGGAAAGCTGCCGTTGCGTGGGGCTTTTCCCGAGCTCCTTTCTTCT
TCCCGACGTAAGGATCCTCAGGAAATTGGCTGTGGAACTACCATGTTGGG
CGCGGCTCCTTGGGCATCGCCGCCGCGTCAAGGTTACTTCGACACCCGGA
TTGAGGACGCAGTGTTGGCGAGTGAAAAGGCGCGGATCGCAGATGAGTAT
GCAATCAAAATCCGGGATAAAGAGCATTTGGCCTATTTCCACGAATTTGA
GAAGTTATTCGGAATCATCGAAGAAGTGGACGACGAGGAGAAGAAGCGAG
TGACAAAAAAGGTGCTGAATGTGCCTAATAAACCGCGTCCGAATGACGAC
CCTTGTCCAGCTTGTGGCTTCAAACTTGATACTCCCACGCAGACCTTTTG
CTTGGTATGCGGTCACTATGAAGAGACATTGCGGTTCCGAAAACAAGGAG
ACAAGGTTGGAGGGGTGGCTCGAACAGGGCAAGATGACGTTGAGGAGATC
GAGCAATAG
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protein sequence of NO14G00880.1

>NO14G00880.1-protein ID=NO14G00880.1-protein|Name=NO14G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MSEPDVNNAAISARELLHAAVLDIAQAQFDKLPRPEECIVLFSGGVDSSV
SLHLAASLLGVKHAITVLVQDTPASDEPWAEATAENFPGVTHIVLRPTLD
ELLGQDMPFLVQTIHSFDGMALRNSVCATHGLRHAASLGFKYVLTGDAAD
ELMGGYRFTHRYDDEAWTQQRATMVAKWHFDSSVVGDALGMRVTSPFLHP
PFVDFCLKSLRKLDCVGPYSLRVTPSAALEDGVITGKLPLRGAFPELLSS
SRRKDPQEIGCGTTMLGAAPWASPPRQGYFDTRIEDAVLASEKARIADEY
AIKIRDKEHLAYFHEFEKLFGIIEEVDDEEKKRVTKKVLNVPNKPRPNDD
PCPACGFKLDTPTQTFCLVCGHYEETLRFRKQGDKVGGVARTGQDDVEEI
EQ*
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mRNA from alignment at chr14:302807..304015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00880.1 ID=NO14G00880.1|Name=NO14G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp|location=Sequence derived from alignment at chr14:302807..304015- (Nannochloropsis oceanica)
ATGTCAGAACCCGATGTAAACAACGCCGCCATTTCAGCCCGGGAGCTCCT
CCATGCCGCCGTTCTGGACATTGCCCAGGCACAATTCGACAAGTTGCCTA
GGCCGGAGGAATGCATCGTCCTTTTCTCAGGCGGGGTGGACTCTTCCGTC
TCGCTTCACCTCGCTGCCTCCTTGCTCGGCGTAAAGCATGCCATCACTGT
GCTTGTGCAGGATACTCCGGCCTCCGATGAGCCTTGGGCCGAGGCCACCG
CAGAAAATTTTCCTGGTGTGACTCATATTGTGCTGCGGCCCACGCTGGAT
GAGCTTTTGGGCCAGGACATGCCGTTTTTGGTGCAAACGATTCATTCGTT
CGACGGGATGGCTTTGCGGAATTCAGTCTGTGCCACGCATGGTCTTCGGC
ACGCGGCCTCCTTGGGATTCAAGTATGTCTTGACAGGCGATGCAGCGGAC
GAATTAATGGGTGGATACCGCTTTACGCACAGATATGATGACGAGGCGTG
GACCCAACAACGCGCTACGATGGTTGCCAAATGGCATTTTGACAGCAGTG
TGGTCGGCGATGCTTTGGGCATGCGCGTCACCTCGCCCTTTCTCCATCCG
CCATTTGTGGACTTCTGTTTGAAAAGTCTCAGAAAACTGGATTGTGTCGG
TCCCTATTCCTTGCGGGTGACTCCTTCCGCAGCCCTGGAGGACGGCGTCA
TCACAGGAAAGCTGCCGTTGCGTGGGGCTTTTCCCGAGCTCCTTTCTTCT
TCCCGACGTAAGGATCCTCAGGAAATTGGCTGTGGAACTACCATGTTGGG
CGCGGCTCCTTGGGCATCGCCGCCGCGTCAAGGTTACTTCGACACCCGGA
TTGAGGACGCAGTGTTGGCGAGTGAAAAGGCGCGGATCGCAGATGAGTAT
GCAATCAAAATCCGGGATAAAGAGCATTTGGCCTATTTCCACGAATTTGA
GAAGTTATTCGGAATCATCGAAGAAGTGGACGACGAGGAGAAGAAGCGAG
TGACAAAAAAGGTGCTGAATGTGCCTAATAAACCGCGTCCGAATGACGAC
CCTTGTCCAGCTTGTGGCTTCAAACTTGATACTCCCACGCAGACCTTTTG
CTTGGTATGCGGTCACTATGAAGAGACATTGCGGTTCCGAAAACAAGGAG
ACAAGGTTGGAGGGGTGGCTCGAACAGGGCAAGATGACGTTGAGGAGATC
GAGCAATAG
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Coding sequence (CDS) from alignment at chr14:302807..304015-

>NO14G00880.1 ID=NO14G00880.1|Name=NO14G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr14:302807..304015- (Nannochloropsis oceanica)
ATGTCAGAACCCGATGTAAACAACGCCGCCATTTCAGCCCGGGAGCTCCT
CCATGCCGCCGTTCTGGACATTGCCCAGGCACAATTCGACAAGTTGCCTA
GGCCGGAGGAATGCATCGTCCTTTTCTCAGGCGGGGTGGACTCTTCCGTC
TCGCTTCACCTCGCTGCCTCCTTGCTCGGCGTAAAGCATGCCATCACTGT
GCTTGTGCAGGATACTCCGGCCTCCGATGAGCCTTGGGCCGAGGCCACCG
CAGAAAATTTTCCTGGTGTGACTCATATTGTGCTGCGGCCCACGCTGGAT
GAGCTTTTGGGCCAGGACATGCCGTTTTTGGTGCAAACGATTCATTCGTT
CGACGGGATGGCTTTGCGGAATTCAGTCTGTGCCACGCATGGTCTTCGGC
ACGCGGCCTCCTTGGGATTCAAGTATGTCTTGACAGGCGATGCAGCGGAC
GAATTAATGGGTGGATACCGCTTTACGCACAGATATGATGACGAGGCGTG
GACCCAACAACGCGCTACGATGGTTGCCAAATGGCATTTTGACAGCAGTG
TGGTCGGCGATGCTTTGGGCATGCGCGTCACCTCGCCCTTTCTCCATCCG
CCATTTGTGGACTTCTGTTTGAAAAGTCTCAGAAAACTGGATTGTGTCGG
TCCCTATTCCTTGCGGGTGACTCCTTCCGCAGCCCTGGAGGACGGCGTCA
TCACAGGAAAGCTGCCGTTGCGTGGGGCTTTTCCCGAGCTCCTTTCTTCT
TCCCGACGTAAGGATCCTCAGGAAATTGGCTGTGGAACTACCATGTTGGG
CGCGGCTCCTTGGGCATCGCCGCCGCGTCAAGGTTACTTCGACACCCGGA
TTGAGGACGCAGTGTTGGCGAGTGAAAAGGCGCGGATCGCAGATGAGTAT
GCAATCAAAATCCGGGATAAAGAGCATTTGGCCTATTTCCACGAATTTGA
GAAGTTATTCGGAATCATCGAAGAAGTGGACGACGAGGAGAAGAAGCGAG
TGACAAAAAAGGTGCTGAATGTGCCTAATAAACCGCGTCCGAATGACGAC
CCTTGTCCAGCTTGTGGCTTCAAACTTGATACTCCCACGCAGACCTTTTG
CTTGGTATGCGGTCACTATGAAGAGACATTGCGGTTCCGAAAACAAGGAG
ACAAGGTTGGAGGGGTGGCTCGAACAGGGCAAGATGACGTTGAGGAGATC
GAGCAATAG
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Synonyms
Publications