NO14G00810.1, NO14G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00810.1
Unique NameNO14G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1129
Alignment locationchr14:287149..288595 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:287149..288595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00810.1 vs.
Match: EWM24725.1 (hypothetical protein Naga_100180g3 [Nannochloropsis gaditana])

HSP 1 Score: 346.7 bits (888), Expect = 8.600e-92
Identity = 206/317 (64.98%), Postives = 238/317 (75.08%), Query Frame = 0 
Query:   30 TLLCFLSKSQAYFSPRS---FSSSFP--IAFGIRRNQ-QQHHEHNPHSLSDGPPPSHFSSLPYPSSLITSSQARIQAWRSFRRLPS--SLFSTPTPSPPNPPS--DRDKEALRRQRILAMQKEISEEILIVSEEEREAAEAAKRKLRQSARSAIYQAYNKVGGEIAINEIGIPKKMSRMSKSKFIDEETRKKDEISRGKSYAARKFQLLFDSLWLSALGLALCWTAFSFEASVSYGLGALLGFGYITLLGRTVEAIGTVGVPGAGVGQARFAMVILLVLLAGKYRDTIQVIPAIIGFSTYQVASFLQAFDREEVKEK 337
            TLLCF +     F P +   F+   P  IAFG+ R Q  Q H+H P      P   H S     S+L  +S  R QAW+ F RLPS  +  ST   SPP PPS  +RD EALRRQRILAMQ EI EEIL+ S+EERE A+AAKR LRQS R AIY+AY++VGGE+ I+EIGIPKKM+RM K  F DEE RKK+ ISRGK YA RKFQLLFDS+WLSA+GLALCW AFS + SVSYGLGA+LGFGYITLLGRTVEA+GT G PGAGVGQARFAMVILLVL+AGKYRD +QVIPA++GFSTYQVASFLQAFD ++V +K
Sbjct:   27 TLLCFFNM----FPPTTKAIFTHPCPSAIAFGLCRGQGHQQHQHVP------PRRDHQSIACSSSTLAVASPQRFQAWKHFSRLPSLRATDSTSPSSPPPPPSSSNRDAEALRRQRILAMQNEIVEEILLASDEEREKADAAKRALRQSTRRAIYEAYSQVGGEVNISEIGIPKKMTRMPKRAFADEEARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAG-PGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDTQDVTDK 332
The following BLAST results are available for this feature:
BLAST of NO14G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24725.18.600e-9264.98hypothetical protein Naga_100180g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00810NO14G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00810.1NO14G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00810.1.cds1NO14G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00810.1.cds2NO14G00810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00810.1 ID=NO14G00810.1|Name=NO14G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1129bp
AAACACAGGCCCACCGTACCAACAGCCGTGATCATGACAATATCGTCAAG
AAGGAGACCGAGGAGCGACCCCAAGGTCTCTGCTTGTCTGATCAAACCCA
GCACGACCGTGGCTGTCCTGACGCTGCTGTGCTTCTTGTCGAAAAGCCAG
GCCTACTTCTCCCCCCGCTCCTTTTCCTCCTCCTTCCCCATTGCATTTGG
CATCCGCCGCAACCAGCAGCAGCACCACGAGCACAATCCCCACTCGCTCT
CCGACGGCCCCCCTCCATCACATTTCTCCTCCTTACCCTACCCATCTTCA
CTCATAACCTCCTCCCAAGCCCGCATCCAAGCCTGGCGCTCTTTCCGTCG
CCTCCCATCCTCCCTCTTTTCCACCCCCACACCCTCTCCTCCCAATCCCC
CCTCCGACCGCGACAAAGAAGCCCTTCGTCGGCAACGTATTTTGGCTATG
CAAAAAGAAATCAGCGAGGAAATTCTTATCGTTAGTGAGGAGGAGCGTGA
AGCAGCCGAGGCGGCCAAGAGAAAACTCCGTCAATCCGCGCGCTCGGCCA
TCTATCAAGCCTACAACAAAGTAGGCGGAGAAATCGCCATTAACGAGATT
GGCATTCCCAAGAAGATGTCGCGCATGTCCAAAAGCAAATTTATCGACGA
GGAAACGCGTAAGAAAGACGAGATATCAAGGGGGAAGAGCTATGCGGCGA
GGAAATTTCAACTTCTATTTGACAGCCTGTGGTTGTCCGCACTTGGGCTG
GCTTTGTGCTGGACGGCTTTCTCATTTGAAGCGAGCGTGTCGTATGGATT
AGGGGCGTTGCTAGGATTCGGTTACATCACCTTGTTAGGACGGACAGTGG
AAGCAATTGGAACAGTAGGCGTCCCCGGGGCAGGGGTGGGACAAGCACGA
TTTGCTATGGTGATTTTGTTGGTGCTGCTGGCGGGGAAATACAGGGATAC
GATTCAAGTGATTCCGGCGATTATTGGGTTTTCGACGTATCAGGTCGCCT
CATTTTTGCAAGCCTTCGACAGGGAAGAGGTGAAGGAGAAGACGGTAGTT
GGGGAGGTTAGAGAGACGATGGCGCCTCCACAGTAAAGTGTGGGTGAAAA
GGAAAGGAGCATGAATCGAGACAAAAGCA
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protein sequence of NO14G00810.1

>NO14G00810.1-protein ID=NO14G00810.1-protein|Name=NO14G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MTISSRRRPRSDPKVSACLIKPSTTVAVLTLLCFLSKSQAYFSPRSFSSS
FPIAFGIRRNQQQHHEHNPHSLSDGPPPSHFSSLPYPSSLITSSQARIQA
WRSFRRLPSSLFSTPTPSPPNPPSDRDKEALRRQRILAMQKEISEEILIV
SEEEREAAEAAKRKLRQSARSAIYQAYNKVGGEIAINEIGIPKKMSRMSK
SKFIDEETRKKDEISRGKSYAARKFQLLFDSLWLSALGLALCWTAFSFEA
SVSYGLGALLGFGYITLLGRTVEAIGTVGVPGAGVGQARFAMVILLVLLA
GKYRDTIQVIPAIIGFSTYQVASFLQAFDREEVKEKTVVGEVRETMAPPQ
*
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mRNA from alignment at chr14:287149..288595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00810.1 ID=NO14G00810.1|Name=NO14G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp|location=Sequence derived from alignment at chr14:287149..288595- (Nannochloropsis oceanica)
AAACACAGGCCCACCGTACCAACAGCCGTGATCATGACAATATCGTCAAG
AAGGAGACCGAGGAGCGACCCCAAGGTCTCTGCTTGTCTGATCAAACCCA
GCACGACCGTGGCTGTCCTGACGCTGCTGTGCTTCTTGTCGAAAAGCCAG
GTACGTCTCGTGGATGGTATGCCGGAACTCTGATCAAATCGACAGAGGCA
GTAAGGCACGGTGACGATTAAATGTGATATTCTTTTGCTTCTGCGCCATA
TTGAAGCGTACCTGCGTCAGAATTCGCTAATGCTATTTCACAGCGCCCCG
CAACGGCCTGAATTACATGACTCTAATTACAAGCCTCCATGTCTTCGTTC
TTACAGATGAGGACGCTAGCGCTCAAGAAAGCTAATGCGCATCGTCTTCT
CGGTCGTCTTTGTACACTTATATTCAACTCCACTTCATCTTCCCTCATTC
CTTCTCAATAAATCAAAGGCCTACTTCTCCCCCCGCTCCTTTTCCTCCTC
CTTCCCCATTGCATTTGGCATCCGCCGCAACCAGCAGCAGCACCACGAGC
ACAATCCCCACTCGCTCTCCGACGGCCCCCCTCCATCACATTTCTCCTCC
TTACCCTACCCATCTTCACTCATAACCTCCTCCCAAGCCCGCATCCAAGC
CTGGCGCTCTTTCCGTCGCCTCCCATCCTCCCTCTTTTCCACCCCCACAC
CCTCTCCTCCCAATCCCCCCTCCGACCGCGACAAAGAAGCCCTTCGTCGG
CAACGTATTTTGGCTATGCAAAAAGAAATCAGCGAGGAAATTCTTATCGT
TAGTGAGGAGGAGCGTGAAGCAGCCGAGGCGGCCAAGAGAAAACTCCGTC
AATCCGCGCGCTCGGCCATCTATCAAGCCTACAACAAAGTAGGCGGAGAA
ATCGCCATTAACGAGATTGGCATTCCCAAGAAGATGTCGCGCATGTCCAA
AAGCAAATTTATCGACGAGGAAACGCGTAAGAAAGACGAGATATCAAGGG
GGAAGAGCTATGCGGCGAGGAAATTTCAACTTCTATTTGACAGCCTGTGG
TTGTCCGCACTTGGGCTGGCTTTGTGCTGGACGGCTTTCTCATTTGAAGC
GAGCGTGTCGTATGGATTAGGGGCGTTGCTAGGATTCGGTTACATCACCT
TGTTAGGACGGACAGTGGAAGCAATTGGAACAGTAGGCGTCCCCGGGGCA
GGGGTGGGACAAGCACGATTTGCTATGGTGATTTTGTTGGTGCTGCTGGC
GGGGAAATACAGGGATACGATTCAAGTGATTCCGGCGATTATTGGGTTTT
CGACGTATCAGGTCGCCTCATTTTTGCAAGCCTTCGACAGGGAAGAGGTG
AAGGAGAAGACGGTAGTTGGGGAGGTTAGAGAGACGATGGCGCCTCCACA
GTAAAGTGTGGGTGAAAAGGAAAGGAGCATGAATCGAGACAAAAGCA
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Coding sequence (CDS) from alignment at chr14:287149..288595-

>NO14G00810.1 ID=NO14G00810.1|Name=NO14G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr14:287149..288595- (Nannochloropsis oceanica)
ATGACAATATCGTCAAGAAGGAGACCGAGGAGCGACCCCAAGGTCTCTGC
TTGTCTGATCAAACCCAGCACGACCGTGGCTGTCCTGACGCTGCTGTGCT
TCTTGTCGAAAAGCCAGGCCTACTTCTCCCCCCGCTCCTTTTCCTCCTCC
TTCCCCATTGCATTTGGCATCCGCCGCAACCAGCAGCAGCACCACGAGCA
CAATCCCCACTCGCTCTCCGACGGCCCCCCTCCATCACATTTCTCCTCCT
TACCCTACCCATCTTCACTCATAACCTCCTCCCAAGCCCGCATCCAAGCC
TGGCGCTCTTTCCGTCGCCTCCCATCCTCCCTCTTTTCCACCCCCACACC
CTCTCCTCCCAATCCCCCCTCCGACCGCGACAAAGAAGCCCTTCGTCGGC
AACGTATTTTGGCTATGCAAAAAGAAATCAGCGAGGAAATTCTTATCGTT
AGTGAGGAGGAGCGTGAAGCAGCCGAGGCGGCCAAGAGAAAACTCCGTCA
ATCCGCGCGCTCGGCCATCTATCAAGCCTACAACAAAGTAGGCGGAGAAA
TCGCCATTAACGAGATTGGCATTCCCAAGAAGATGTCGCGCATGTCCAAA
AGCAAATTTATCGACGAGGAAACGCGTAAGAAAGACGAGATATCAAGGGG
GAAGAGCTATGCGGCGAGGAAATTTCAACTTCTATTTGACAGCCTGTGGT
TGTCCGCACTTGGGCTGGCTTTGTGCTGGACGGCTTTCTCATTTGAAGCG
AGCGTGTCGTATGGATTAGGGGCGTTGCTAGGATTCGGTTACATCACCTT
GTTAGGACGGACAGTGGAAGCAATTGGAACAGTAGGCGTCCCCGGGGCAG
GGGTGGGACAAGCACGATTTGCTATGGTGATTTTGTTGGTGCTGCTGGCG
GGGAAATACAGGGATACGATTCAAGTGATTCCGGCGATTATTGGGTTTTC
GACGTATCAGGTCGCCTCATTTTTGCAAGCCTTCGACAGGGAAGAGGTGA
AGGAGAAGACGGTAGTTGGGGAGGTTAGAGAGACGATGGCGCCTCCACAG
TAA
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Synonyms
Publications