NO14G00740.1, NO14G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00740.1
Unique NameNO14G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1556
Alignment locationchr14:261661..263398 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:261661..263398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00740.1 vs.
Match: EWM24724.1 (Zinc finger, C2H2, LYAR-type [Nannochloropsis gaditana])

HSP 1 Score: 243.8 bits (621), Expect = 7.700e-61
Identity = 134/221 (60.63%), Postives = 162/221 (73.30%), Query Frame = 0 
Query:    1 MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGGGGKGKKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVAMNEAEEKKKKERKDEEKEGKEEDAATISTKGSDKKERETITTPIGTLDNTKKS-KKGKKKRK 221
            MVFFSCEGCNETLKK QVE+H+RRA C  YPVSCVDCSQVF G+ YQAHT+CISEAEKYEKSLYKGP+AG  GGKGKKRNPQEEWM+MI   A +     G++  L+  L RMAELGNVPRNEKKFKNFL+NSLRINR+ EQ+ELW +LKGK+D  K A   AE    +   D+ +EGK+E         S  ++   +++P  + D  +K  +KG+KKRK
Sbjct:    1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPA---AEAPSGQVMADKAEEGKKEGTTRTMRAASKPEDDGQVSSP--STDKIEKGFEKGEKKRK 216
The following BLAST results are available for this feature:
BLAST of NO14G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24724.17.700e-6160.63Zinc finger, C2H2, LYAR-type [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00740NO14G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00740.1NO14G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00740.1.cds1NO14G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00740.1.cds2NO14G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00740.1 ID=NO14G00740.1|Name=NO14G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1556bp
TGCCAACCTCCTGGCTATCCTTGCCTCCCTTTTTGGTTTTGGTATCATCA
AAGCGTAAAACATTTATTATTGTACTCCCTATGCTTATATTTAATACCTG
CTCGTATTCTGCACTGGGTTTGGGTTGTCTAAAGCTGGGATAGGGGAAGG
CACGGAGCACATATGAGGCGGGTATTGAAGCAAGTGTTCGTCAGCCGTCG
CCCCATCCACACACCCTTCACTTTCTCTTTCCAGGCTTACCACAAGTCGG
CCTTTGCACCTATCTCGTGAAGAGTAGTAAGCTCACGCTCATCACACCTT
ACAGACCTCCCCCTATTTGTTCAGGCGTACCTTTGCGCTGTCTTACTAAG
ATACTCCAAGCAGCCCATCCCAACCACCGCTATCACCCCCACCTGCCTAC
CATGGTCTTCTTCTCTTGCGAAGGTTGCAATGAGACGCTGAAAAAAAACC
AAGTTGAGAACCATATTCGACGGGCGTCCTGTGGCCACTACCCGGTATCG
TGTGTGGACTGCAGTCAAGTCTTTCACGGCGCGGACTATCAAGCCCACAC
GACCTGCATCTCTGAGGCGGAAAAGTATGAGAAGTCCCTCTACAAAGGCC
CCAGGGCGGGCGGCGGGGGTGGCAAGGGGAAGAAACGTAACCCACAGGAG
GAATGGATGGACATGATTGGTTTGGCTGCGGCCGAGGAAGGGAGTGTGGT
GGGCTTAAGTCCGTCCCTTCAGGGGCAGCTGCCGCGCATGGCCGAGCTAG
GCAATGTGCCTCGAAACGAGAAGAAGTTCAAGAATTTTCTGAGCAACAGC
TTACGGATAAATCGAGCGACTGAGCAAGAAGAACTGTGGATTTTTTTGAA
GGGAAAGATAGACGCAGCGAAGGTAGCCATGAACGAGGCCGAGGAGAAGA
AGAAGAAGGAGAGGAAGGATGAGGAGAAGGAGGGGAAGGAAGAGGACGCA
GCGACCATCTCAACGAAAGGATCTGACAAGAAGGAGCGAGAGACCATCAC
CACTCCTATAGGAACCCTAGACAACACCAAGAAGTCGAAAAAGGGCAAGA
AGAAAAGGAAGGCGGGGGAGGAGGGGGAGGCAGCGGTGGAGGACGAGCCC
GCCACCCCGCGTCAATCCAAGAAGAAACAGAAGAATGGGGCACCGACGAC
AGCAGCATTGAAAGGGGGCAATGACGGTGACAAGCATTCACTAGCAGCAG
TAGGAGAAGCAGAAGTCTCCTTTCCATGGGGGAAGACTATTAAGAGACTC
ATCAAGAAGGCTGAGGGAAGAAAAATGGACCGGCAAACATTGCAAAAAGA
GGCACTTGCTCTGGCTTCGAAGACGAGCACCCAAAGTAAGAAAGGACTCA
AAAGACAATTTAAAGAGGCATTGGGTGGAGGCGTGGCAGGTGTGCAGGTG
AACGGGGAAGTGGTCATGCTAGTTAAATAGTAACGCTGGGCAGGGAATAA
GCGTGGGATTATTGGTGGCAGAGAGAAGGCCCAAAAAGACATCAAAACTC
AAAAAAATCAAAAACCAAAAAGCATATGCTCAAGGAAAAGCATGGAGAAC
ACCCGC
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protein sequence of NO14G00740.1

>NO14G00740.1-protein ID=NO14G00740.1-protein|Name=NO14G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHT
TCISEAEKYEKSLYKGPRAGGGGGKGKKRNPQEEWMDMIGLAAAEEGSVV
GLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLK
GKIDAAKVAMNEAEEKKKKERKDEEKEGKEEDAATISTKGSDKKERETIT
TPIGTLDNTKKSKKGKKKRKAGEEGEAAVEDEPATPRQSKKKQKNGAPTT
AALKGGNDGDKHSLAAVGEAEVSFPWGKTIKRLIKKAEGRKMDRQTLQKE
ALALASKTSTQSKKGLKRQFKEALGGGVAGVQVNGEVVMLVK*
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mRNA from alignment at chr14:261661..263398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00740.1 ID=NO14G00740.1|Name=NO14G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp|location=Sequence derived from alignment at chr14:261661..263398- (Nannochloropsis oceanica)
TGCCAACCTCCTGGCTATCCTTGCCTCCCTTTTTGGTTTTGGTATCATCA
AAGCGTAAAACATTTATTATTGTACTCCCTATGCTTATATTTAATACCTG
CTCGTATTCTGCACTGGGTTTGGGTTGTCTAAAGCTGGGATAGGGGAAGG
CACGGAGCACATATGAGGCGGGTATTGAAGCAAGTGTTCGTCAGCCGTCG
CCCCATCCACACACCCTTCACTTTCTCTTTCCAGGCTTACCACAAGTCGG
CCTTTGCACCTATCTCGTGAAGAGTAGTAAGCTCACGCTCATCACACCTT
ACAGACCTCCCCCTATTTGTTCAGGCGTACCTTTGCGCTGTCTTACTAAG
ATACTCCAAGCAGCCCATCCCAACCACCGCTATCACCCCCACCTGCCTAC
CATGGTCTTCTTCTCTTGCGAAGGTTGCAATGAGACGCTGAAAAAAAACC
AAGTTGAGAACCATATTCGACGGGCGTCCTGTGGCCACTACCCGGTATCG
TGTGTGGACTGCAGTCAAGTCTTTCACGGCGCGGACTATCAAGCCCACAC
GACCTGCATCTCTGAGGCGGAAAAGTATGAGAAGTCCCTCTACAAAGGCC
CCAGGGCGGGCGGCGGGGGTGGCAAGGGGAAGAAACGTAACCCACAGGAG
GAATGGATGGACATGATTGGTTTGGCTGCGGCCGAGGAAGGGAGTGTGGT
GGGCTTAAGTCCGTCCCTTCAGGGGCAGCTGCCGCGCATGGCCGAGCTAG
GCAATGTGCCTCGAAACGAGAAGAAGTTCAAGAATTTTCTGAGCAACAGC
TTACGGGTACGTATATAGTAGGGTTAGTTTTTCGTAGGATTTGTGTGGGA
GTGGAAGAACGAAATAGTACACGTCAACAAGGGACCTCATGTCTGTTGTG
TCGCTTGGCTCAACCTGAAAAAGAGCGACCTGAGCCTGGTGCCACAATCA
CCACTTTTTCCACATTCCCGCACACAAACACATAATAGATAAATCGAGCG
ACTGAGCAAGAAGAACTGTGGATTTTTTTGAAGGGAAAGATAGACGCAGC
GAAGGTAGCCATGAACGAGGCCGAGGAGAAGAAGAAGAAGGAGAGGAAGG
ATGAGGAGAAGGAGGGGAAGGAAGAGGACGCAGCGACCATCTCAACGAAA
GGATCTGACAAGAAGGAGCGAGAGACCATCACCACTCCTATAGGAACCCT
AGACAACACCAAGAAGTCGAAAAAGGGCAAGAAGAAAAGGAAGGCGGGGG
AGGAGGGGGAGGCAGCGGTGGAGGACGAGCCCGCCACCCCGCGTCAATCC
AAGAAGAAACAGAAGAATGGGGCACCGACGACAGCAGCATTGAAAGGGGG
CAATGACGGTGACAAGCATTCACTAGCAGCAGTAGGAGAAGCAGAAGTCT
CCTTTCCATGGGGGAAGACTATTAAGAGACTCATCAAGAAGGCTGAGGGA
AGAAAAATGGACCGGCAAACATTGCAAAAAGAGGCACTTGCTCTGGCTTC
GAAGACGAGCACCCAAAGTAAGAAAGGACTCAAAAGACAATTTAAAGAGG
CATTGGGTGGAGGCGTGGCAGGTGTGCAGGTGAACGGGGAAGTGGTCATG
CTAGTTAAATAGTAACGCTGGGCAGGGAATAAGCGTGGGATTATTGGTGG
CAGAGAGAAGGCCCAAAAAGACATCAAAACTCAAAAAAATCAAAAACCAA
AAAGCATATGCTCAAGGAAAAGCATGGAGAACACCCGC
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Coding sequence (CDS) from alignment at chr14:261661..263398-

>NO14G00740.1 ID=NO14G00740.1|Name=NO14G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr14:261661..263398- (Nannochloropsis oceanica)
ATGGTCTTCTTCTCTTGCGAAGGTTGCAATGAGACGCTGAAAAAAAACCA
AGTTGAGAACCATATTCGACGGGCGTCCTGTGGCCACTACCCGGTATCGT
GTGTGGACTGCAGTCAAGTCTTTCACGGCGCGGACTATCAAGCCCACACG
ACCTGCATCTCTGAGGCGGAAAAGTATGAGAAGTCCCTCTACAAAGGCCC
CAGGGCGGGCGGCGGGGGTGGCAAGGGGAAGAAACGTAACCCACAGGAGG
AATGGATGGACATGATTGGTTTGGCTGCGGCCGAGGAAGGGAGTGTGGTG
GGCTTAAGTCCGTCCCTTCAGGGGCAGCTGCCGCGCATGGCCGAGCTAGG
CAATGTGCCTCGAAACGAGAAGAAGTTCAAGAATTTTCTGAGCAACAGCT
TACGGATAAATCGAGCGACTGAGCAAGAAGAACTGTGGATTTTTTTGAAG
GGAAAGATAGACGCAGCGAAGGTAGCCATGAACGAGGCCGAGGAGAAGAA
GAAGAAGGAGAGGAAGGATGAGGAGAAGGAGGGGAAGGAAGAGGACGCAG
CGACCATCTCAACGAAAGGATCTGACAAGAAGGAGCGAGAGACCATCACC
ACTCCTATAGGAACCCTAGACAACACCAAGAAGTCGAAAAAGGGCAAGAA
GAAAAGGAAGGCGGGGGAGGAGGGGGAGGCAGCGGTGGAGGACGAGCCCG
CCACCCCGCGTCAATCCAAGAAGAAACAGAAGAATGGGGCACCGACGACA
GCAGCATTGAAAGGGGGCAATGACGGTGACAAGCATTCACTAGCAGCAGT
AGGAGAAGCAGAAGTCTCCTTTCCATGGGGGAAGACTATTAAGAGACTCA
TCAAGAAGGCTGAGGGAAGAAAAATGGACCGGCAAACATTGCAAAAAGAG
GCACTTGCTCTGGCTTCGAAGACGAGCACCCAAAGTAAGAAAGGACTCAA
AAGACAATTTAAAGAGGCATTGGGTGGAGGCGTGGCAGGTGTGCAGGTGA
ACGGGGAAGTGGTCATGCTAGTTAAATAG
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Synonyms
Publications