NO14G00710.1, NO14G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00710.1
Unique NameNO14G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1089
Alignment locationchr14:256171..257381 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:256171..257381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00710.1 vs.
Match: EWM24718.1 (zinc-binding integral peroxisomal membrane protein PEX12 [Nannochloropsis gaditana])

HSP 1 Score: 238.4 bits (607), Expect = 3.400e-59
Identity = 125/172 (72.67%), Postives = 140/172 (81.40%), Query Frame = 0 
Query:    1 MSIGGMFLAHELGTDPQFPSFFEVFMQDRIHQSLKPAVRHVFLVLVQRWPQALVLLDHFDEVFAVLSLFLERHYLAKNDALVAESLYGFKRSRYQPHEQTPQQQKQQNASTGMNSNQNTGISSG-AMSPLTQMDRRKALLVNILAPYAKAKLDALYTHWKDVLPPLPVLLRR 172
            MSIGGMFLAHE+GTDP +PSFFEVFMQDRIHQSLKPAVRHVFLVL +RWPQA+VLLDH DEVFA++SLFLERHYLAKNDAL +ESLYGFKRSRY+  E T  + +Q   +   N++  TG S    MS LTQ DRR ALLV ILAPYAKAKLDALY H+KD L P PV+ RR
Sbjct:   21 MSIGGMFLAHEMGTDPHYPSFFEVFMQDRIHQSLKPAVRHVFLVLAERWPQAVVLLDHLDEVFAIMSLFLERHYLAKNDALFSESLYGFKRSRYRSQEGTGPRNEQHRKADNSNTSNVTGQSEHMKMSALTQGDRRLALLVTILAPYAKAKLDALYIHYKDTLLPSPVVNRR 192
The following BLAST results are available for this feature:
BLAST of NO14G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24718.13.400e-5972.67zinc-binding integral peroxisomal membrane protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00710NO14G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00710.1NO14G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00710.1.cds1NO14G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00710.1.cds2NO14G00710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00710.1 ID=NO14G00710.1|Name=NO14G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ATGTCGATCGGGGGCATGTTTTTGGCCCACGAGTTGGGCACTGACCCACA
ATTTCCTTCCTTCTTCGAGGTATTCATGCAAGACCGCATCCACCAAAGCC
TCAAGCCTGCGGTGCGTCACGTCTTCCTCGTCCTGGTCCAACGATGGCCG
CAAGCTCTGGTACTGCTCGATCATTTCGACGAGGTCTTCGCGGTGCTGTC
TCTGTTTTTGGAAAGGCATTACCTGGCCAAGAACGACGCCTTGGTAGCCG
AGTCCCTGTATGGCTTCAAACGATCTCGATACCAACCTCATGAACAAACC
CCTCAGCAACAAAAGCAGCAAAACGCCAGTACCGGCATGAACAGCAATCA
GAACACAGGAATCAGCTCGGGGGCTATGAGCCCTCTGACACAAATGGATC
GGAGGAAAGCTCTGCTGGTCAATATTTTGGCGCCCTACGCCAAGGCCAAG
CTAGATGCCTTATACACGCATTGGAAAGACGTCCTCCCCCCCCTCCCTGT
CCTCCTTCGACGACACCCAACAGTAATAATGGGAGAGGGAGACTGCGATC
TCCAGCAAACGGGTTCCTTCTTCGTCTACCAATGGGCATACCTTTTTGGT
CGCACCAAACACTACTCCCCTCTCCTCCACATCCTCGGCGTTGTCCTCCG
CCGGCTCACCCACGAAGATCTCCCCTCTTCCTCACCGTCTTCCTCCTCCT
CCCTCTCCAGCACCATTTCCCCCAAACCCACTCTCGCCTCCCGCCTTACG
CGCTCTCTCAAAGTCGCATTCGTCGTCGCGATCGTTGCCTTCAAGGTCCT
TGAATGGTGGCTTTCAACCCCAGAGCTCCTTCATTCGTCCCCTCGTCAAA
AACGCATCATTCCCCCCGTTCCCGACCCCCCCTCCGCCGCTCCCTCCGGA
ATATCCTTGCCCAAAGACCAGAATCTCTGTCCTTTGTGTAAGAATGTGAG
GGTTAATCCAGCTGTGTCCCCTGCGGGCGTGGCTTACTGCTATCGGTGCT
TGATTGCGCATGTCAGGGAGGTTGGCGTGTGTCCTGTGACCTTGCAAGCC
TGCCGGGAGGAACAGGTACGGCGGATATATTTGACTTGA
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protein sequence of NO14G00710.1

>NO14G00710.1-protein ID=NO14G00710.1-protein|Name=NO14G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MSIGGMFLAHELGTDPQFPSFFEVFMQDRIHQSLKPAVRHVFLVLVQRWP
QALVLLDHFDEVFAVLSLFLERHYLAKNDALVAESLYGFKRSRYQPHEQT
PQQQKQQNASTGMNSNQNTGISSGAMSPLTQMDRRKALLVNILAPYAKAK
LDALYTHWKDVLPPLPVLLRRHPTVIMGEGDCDLQQTGSFFVYQWAYLFG
RTKHYSPLLHILGVVLRRLTHEDLPSSSPSSSSSLSSTISPKPTLASRLT
RSLKVAFVVAIVAFKVLEWWLSTPELLHSSPRQKRIIPPVPDPPSAAPSG
ISLPKDQNLCPLCKNVRVNPAVSPAGVAYCYRCLIAHVREVGVCPVTLQA
CREEQVRRIYLT*
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mRNA from alignment at chr14:256171..257381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00710.1 ID=NO14G00710.1|Name=NO14G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1211bp|location=Sequence derived from alignment at chr14:256171..257381- (Nannochloropsis oceanica)
ATGTCGATCGGGGGCATGTTTTTGGCCCACGAGTTGGGCACTGACCCACA
ATTTCCTTCCTTCTTCGAGGTATTCATGCAAGACCGCATCCACCAAAGCC
TCAAGCCTGCGGTGCGTCACGTCTTCCTCGTCCTGGTCCAACGATGGCCG
CAAGCTCTGGTACTGCTCGATCATTTCGACGAGGTCTTCGCGGTGCTGTC
TCTGTTTTTGGAAAGGCATTACCTGGCCAAGAACGACGCCTTGGTAGCCG
AGTCCCTGTATGGCTTCAAACGATCTCGATACCAACCTCATGAACAAACC
CCTCAGCAACAAAAGCAGCAAAACGCCAGTACCGGCATGAACAGCAATCA
GAACACAGGAATCAGCTCGGGGGCTATGAGCCCTCTGACACAAATGGATC
GGAGGAAAGCTCTGCTGGTCAATATTTTGGCGCCCTACGCCAAGGCCAAG
CTAGATGCCTTATACACGCATTGGAAAGACGTCCTCCCCCCCCTCCCTGT
CCTCCTTCGACGACACCCAACAGTAATAATGGGAGAGGGAGACTGCGATC
TCCAGCAAACGGTGAGGAATGTGAGCACGATGACGAGGAGCTGGAGCCAT
CCCTTCCCCACCATGAGCCTCTCCCTCTCCGCCTCCGTCGTGCCTTCGTC
TCCATGTACCCCCTTCTCCACGCATCCTACGAGGGTTCCTTCTTCGTCTA
CCAATGGGCATACCTTTTTGGTCGCACCAAACACTACTCCCCTCTCCTCC
ACATCCTCGGCGTTGTCCTCCGCCGGCTCACCCACGAAGATCTCCCCTCT
TCCTCACCGTCTTCCTCCTCCTCCCTCTCCAGCACCATTTCCCCCAAACC
CACTCTCGCCTCCCGCCTTACGCGCTCTCTCAAAGTCGCATTCGTCGTCG
CGATCGTTGCCTTCAAGGTCCTTGAATGGTGGCTTTCAACCCCAGAGCTC
CTTCATTCGTCCCCTCGTCAAAAACGCATCATTCCCCCCGTTCCCGACCC
CCCCTCCGCCGCTCCCTCCGGAATATCCTTGCCCAAAGACCAGAATCTCT
GTCCTTTGTGTAAGAATGTGAGGGTTAATCCAGCTGTGTCCCCTGCGGGC
GTGGCTTACTGCTATCGGTGCTTGATTGCGCATGTCAGGGAGGTTGGCGT
GTGTCCTGTGACCTTGCAAGCCTGCCGGGAGGAACAGGTACGGCGGATAT
ATTTGACTTGA
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Coding sequence (CDS) from alignment at chr14:256171..257381-

>NO14G00710.1 ID=NO14G00710.1|Name=NO14G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr14:256171..257381- (Nannochloropsis oceanica)
ATGTCGATCGGGGGCATGTTTTTGGCCCACGAGTTGGGCACTGACCCACA
ATTTCCTTCCTTCTTCGAGGTATTCATGCAAGACCGCATCCACCAAAGCC
TCAAGCCTGCGGTGCGTCACGTCTTCCTCGTCCTGGTCCAACGATGGCCG
CAAGCTCTGGTACTGCTCGATCATTTCGACGAGGTCTTCGCGGTGCTGTC
TCTGTTTTTGGAAAGGCATTACCTGGCCAAGAACGACGCCTTGGTAGCCG
AGTCCCTGTATGGCTTCAAACGATCTCGATACCAACCTCATGAACAAACC
CCTCAGCAACAAAAGCAGCAAAACGCCAGTACCGGCATGAACAGCAATCA
GAACACAGGAATCAGCTCGGGGGCTATGAGCCCTCTGACACAAATGGATC
GGAGGAAAGCTCTGCTGGTCAATATTTTGGCGCCCTACGCCAAGGCCAAG
CTAGATGCCTTATACACGCATTGGAAAGACGTCCTCCCCCCCCTCCCTGT
CCTCCTTCGACGACACCCAACAGTAATAATGGGAGAGGGAGACTGCGATC
TCCAGCAAACGGGTTCCTTCTTCGTCTACCAATGGGCATACCTTTTTGGT
CGCACCAAACACTACTCCCCTCTCCTCCACATCCTCGGCGTTGTCCTCCG
CCGGCTCACCCACGAAGATCTCCCCTCTTCCTCACCGTCTTCCTCCTCCT
CCCTCTCCAGCACCATTTCCCCCAAACCCACTCTCGCCTCCCGCCTTACG
CGCTCTCTCAAAGTCGCATTCGTCGTCGCGATCGTTGCCTTCAAGGTCCT
TGAATGGTGGCTTTCAACCCCAGAGCTCCTTCATTCGTCCCCTCGTCAAA
AACGCATCATTCCCCCCGTTCCCGACCCCCCCTCCGCCGCTCCCTCCGGA
ATATCCTTGCCCAAAGACCAGAATCTCTGTCCTTTGTGTAAGAATGTGAG
GGTTAATCCAGCTGTGTCCCCTGCGGGCGTGGCTTACTGCTATCGGTGCT
TGATTGCGCATGTCAGGGAGGTTGGCGTGTGTCCTGTGACCTTGCAAGCC
TGCCGGGAGGAACAGGTACGGCGGATATATTTGACTTGA
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Synonyms
Publications