NO14G00620.1, NO14G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00620.1
Unique NameNO14G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr14:236164..238314 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:236164..238314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00620.1 vs.
Match: CBJ26213.1 (UPF0250 protein NE1487 [Ectocarpus siliculosus])

HSP 1 Score: 95.1 bits (235), Expect = 2.800e-16
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 0 
Query:  124 RVFDRVLDFPCVFNIKVIGQPAENDAGSFDRDMVELVGQVTGAPPSDIVYSSRDTSSGKYRSLTIHAPVKSADELYEIYEKVDLDPRVKFKF 216
            R F+ ++D+PC F IKVIG     + GSF  D+   V  V     SD+ ++ RDT+SG+Y+S+T+HAPVK+A  LY+ YE +D DPRVKFKF
Sbjct:   93 RAFEYLVDYPCEFEIKVIGI----NEGSFADDIAATVSAVCEVETSDVRFTVRDTTSGRYQSITVHAPVKNATMLYKCYELIDEDPRVKFKF 180
The following BLAST results are available for this feature:
BLAST of NO14G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26213.12.800e-1650.00UPF0250 protein NE1487 [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00620NO14G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00620.1NO14G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00620.1.cds1NO14G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00620.1.cds2NO14G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00620.1.cds3NO14G00620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00620.1.cds4NO14G00620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00620.1.cds5NO14G00620.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00620.1 ID=NO14G00620.1|Name=NO14G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ACAGACCCACCAACGCATCAGCAATGATTCCAAGGGCTCCCGCCACTAGC
GCCAGCCCTCAATCACTATCTCTTCTCGTCCTCCTCCTCGCCCTCCTTCA
CACTACCATCACCACGGCCTTTCTCCTCCCTCATCCCTCCACCAGCCCCA
CTCGTCAGCAGCAGGTGTCGCTCTCATCCTTGTCTCCTTTCTCCTTGCGG
AAAGCCTCGCTGGCGGCCAAGGGCTTTGGTTTTGGCAAAGGACAGAGCGC
GCAGCGAAACGGCACGAACGAGGGTGAGCAAGGACCGGAGCTGTTGTACT
ACCACCAGGAGAAGGACTCTACCATTGACTCCACCACTCAATTTTTAAGG
TTTAACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGGGATGCGGGTCTT
TGATCGCGTCCTGGATTTTCCATGTGTTTTCAACATAAAGGTGATAGGTC
AGCCGGCGGAGAATGATGCAGGCAGCTTTGATAGGGACATGGTGGAGCTC
GTGGGCCAGGTCACCGGCGCCCCTCCCTCTGACATTGTGTACTCTTCTCG
TGACACCAGCAGTGGCAAATACCGCAGCCTCACTATCCATGCCCCGGTCA
AGAGCGCTGATGAACTTTATGAGATCTACGAAAAAGTCGATTTAGACCCT
AGGGTAAAGTTTAAGTTCTGAACAAGGCTGCTTCGTCGTATCCCTCCCTC
CCTCCCTCCCTCCTTCCCTCCCTAATTGAACAAAATTGTGACTGATCGTC
AAATTGGATTTTTTAAAGGGCTCTCTTTCGTTTCCTTCGGGGAGTTGTTA
AGTGCTATTCTTCTTCCCTTCCTCCATCCCTCCTTTCCCTGCCTGCCTTT
TGATGCGATGGGTGGGAGGGGCCCTTGGGTATGTCACGGGAAAAGAGGGA
GGGAGGGAGGGAGGGAGGGAGCACAGGTGGATCCTATCCTATGGTGTGTA
TATATAGAGGCATATATAGCAAGAAGGAATCAAAGGGAATAAAGGAGGAA
CAGAAAGAAGGAGGGAAAGAGAAAAGGGGGGTTTCTGCAGGAGCAGCAGG
TCTGCGGCAGTGGCACAGTAGGAGAGAGATGAGGAGGATAACACGTGCGC
GACAAGAACGAAAGGAGGAAGAGGTGAAGGGAAATAGGGTAGGGGAAGCA
GAGCCATTAATAATGAGAAGCAAAACATGCGAAAGAAGAATGAAGAAAAT
TGTCGCACA
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protein sequence of NO14G00620.1

>NO14G00620.1-protein ID=NO14G00620.1-protein|Name=NO14G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MIPRAPATSASPQSLSLLVLLLALLHTTITTAFLLPHPSTSPTRQQQVSL
SSLSPFSLRKASLAAKGFGFGKGQSAQRNGTNEGEQGPELLYYHQEKDST
IDSTTQFLRFNTKPAGSQAPPGMRVFDRVLDFPCVFNIKVIGQPAENDAG
SFDRDMVELVGQVTGAPPSDIVYSSRDTSSGKYRSLTIHAPVKSADELYE
IYEKVDLDPRVKFKF*
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mRNA from alignment at chr14:236164..238314+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00620.1 ID=NO14G00620.1|Name=NO14G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at chr14:236164..238314+ (Nannochloropsis oceanica)
ACAGACCCACCAACGCATCAGCAATGATTCCAAGGGCTCCCGCCACTAGC
GCCAGCCCTCAATCACTATCTCTTCTCGTCCTCCTCCTCGCCCTCCTTCA
CACTACCATCACCACGGCCTTTCTCCTCCCTCATCCCTCCACCAGCCCCA
CTCGTCAGCAGCAGGTGTCGCTCTCATCCTTGTCTCCTTTCTCCTTGCGG
AAAGCCTCGCTGGCGGCCAAGGTACGTTCGTTTTTACTATAATTCCCTTG
CCCCCCCTCCCGCCCCCTCCCCCCCCCTCCCTCGTCCCTTCCTTCCTGGC
TCCCTCCCATCTTCACCCTTGCGTGTGCTGTCCCTTTCACACCTCTCTGA
TGAATGCTGCCCCAGCACTGTAGACGACCGGTGTGTGAGCTCCTTTTTTT
CTTCTTTGTGGGTATGTAAACACACCAACCCATCCGTCCGTCCGTCCCTC
CCTTCCTCCCCACGTCCTTCCCTTGCTTCCTCCCTCCCTCCATTAGGGCT
TTGGTTTTGGCAAAGGACAGAGCGCGCAGCGAAACGGCACGAACGAGGGT
GAGCAAGGACCGGAGCTGTTGTACTACCACCAGGAGAAGGTGAGGGACGG
AGAGAGGAAGGGAGGGAGAATGATCGGAAGCAACGATTAGGAGTATGGAT
AGGGGCTGCATGACTATCGATTGAATGAGAGGAAATGGAGGATATGCATT
GAAAAGGAAGAAGGAGGAAAAGAAATGAGATAAAGACTGATTTAAAATCA
AAATCACACGCAGGGATAAATCGTACACTCAACCCTCCCTCCCTCCCTCC
CTACTCCCTCCCTCCCTCTCTCAGGACTCTACCATTGACTCCACCACTCA
ATTTTTAAGGTTTAACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGGGA
TGCGGGTCTTTGATCGCGTCCTGGATTTTCCATGTGTTTTCAACATAAAG
GTGGGGAGGGAGAGGAGGAGGGAGGGAGGGGAGGGAAGCGAGGGAAGGAG
GAAGGAGGATGGGAAACGATTTCGCGCACTTTTCAACTCAGTCTTTCCTC
CATGTCGTGCCTCTTGTGTATATGTTATAATTCAATCATATCAATATTTT
GTTCTATACAAAGAGCTGATAGATCCAATTTATTTATAGGTAATGGGGGT
CATATGCATCTGTAATAATATTTCAGGTATGTTGCTGATTGATACGTACG
TACGCCATGTTTTCTATATACATAGGTGATAGGTCAGCCGGCGGAGAATG
ATGCAGGCAGCTTTGATAGGGACATGGTGGAGCTCGTGGGCCAGGTACGA
TATTGGCGCCGGATTTATTTTCAATTACATTTTTTTTTTCTCTAATATAA
ATTGATAACGAACGCTATTTGCATCGCCGATTCCTCCCAGGACACCAGCA
GTGGAAAATACTATAGCCTTACCATCCTCCCTTCCCTCCCTCCCTGCCTA
GGTCACCGGCGCCCCTCCCTCTGACATTGTGTACTCTTCTCGTGACACCA
GCAGTGGCAAATACCGCAGCCTCACTATCCATGCCCCGGTCAAGAGCGCT
GATGAACTTTATGAGATCTACGAAAAAGTCGATTTAGACCCTAGGGTAAA
GTTTAAGTTCTGAACAAGGCTGCTTCGTCGTATCCCTCCCTCCCTCCCTC
CCTCCTTCCCTCCCTAATTGAACAAAATTGTGACTGATCGTCAAATTGGA
TTTTTTAAAGGGCTCTCTTTCGTTTCCTTCGGGGAGTTGTTAAGTGCTAT
TCTTCTTCCCTTCCTCCATCCCTCCTTTCCCTGCCTGCCTTTTGATGCGA
TGGGTGGGAGGGGCCCTTGGGTATGTCACGGGAAAAGAGGGAGGGAGGGA
GGGAGGGAGGGAGCACAGGTGGATCCTATCCTATGGTGTGTATATATAGA
GGCATATATAGCAAGAAGGAATCAAAGGGAATAAAGGAGGAACAGAAAGA
AGGAGGGAAAGAGAAAAGGGGGGTTTCTGCAGGAGCAGCAGGTCTGCGGC
AGTGGCACAGTAGGAGAGAGATGAGGAGGATAACACGTGCGCGACAAGAA
CGAAAGGAGGAAGAGGTGAAGGGAAATAGGGTAGGGGAAGCAGAGCCATT
AATAATGAGAAGCAAAACATGCGAAAGAAGAATGAAGAAAATTGTCGCAC
A
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Coding sequence (CDS) from alignment at chr14:236164..238314+

>NO14G00620.1 ID=NO14G00620.1|Name=NO14G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at chr14:236164..238314+ (Nannochloropsis oceanica)
ATGATTCCAAGGGCTCCCGCCACTAGCGCCAGCCCTCAATCACTATCTCT
TCTCGTCCTCCTCCTCGCCCTCCTTCACACTACCATCACCACGGCCTTTC
TCCTCCCTCATCCCTCCACCAGCCCCACTCGTCAGCAGCAGGTGTCGCTC
TCATCCTTGTCTCCTTTCTCCTTGCGGAAAGCCTCGCTGGCGGCCAAGGG
CTTTGGTTTTGGCAAAGGACAGAGCGCGCAGCGAAACGGCACGAACGAGG
GTGAGCAAGGACCGGAGCTGTTGTACTACCACCAGGAGAAGGACTCTACC
ATTGACTCCACCACTCAATTTTTAAGGTTTAACACCAAGCCCGCCGGCTC
TCAAGCGCCTCCAGGGATGCGGGTCTTTGATCGCGTCCTGGATTTTCCAT
GTGTTTTCAACATAAAGGTGATAGGTCAGCCGGCGGAGAATGATGCAGGC
AGCTTTGATAGGGACATGGTGGAGCTCGTGGGCCAGGTCACCGGCGCCCC
TCCCTCTGACATTGTGTACTCTTCTCGTGACACCAGCAGTGGCAAATACC
GCAGCCTCACTATCCATGCCCCGGTCAAGAGCGCTGATGAACTTTATGAG
ATCTACGAAAAAGTCGATTTAGACCCTAGGGTAAAGTTTAAGTTCTGA
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Synonyms
Publications