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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:147724..151461 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00350.1 vs.
Match: EWM24765.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana]) HSP 1 Score: 278.5 bits (711), Expect = 4.800e-71 Identity = 142/176 (80.68%), Postives = 152/176 (86.36%), Query Frame = 0
Query: 2 MDHLQQTKITSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELQAAQCYDRRARELYETPLLNFLVGGKLNPDRKRRVDPRSLRPRRIPPPWCADKFDPLPPGPVDAEGNPLQIEIPRSRGGARGGGRGGGRGG-GAGRGRKRRSPSPSPSRYPEKFYSDDDDEAGEEDVILSE 177
MDHL Q K+TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDEL AAQCYDRRA+ELYETPLLNFL GGKLNP+RKRRVDPRSLRPRRIPPPWCADKF PLPP D+E L++ IPR GGRGG GG GAGRGRKRRSPSPSPSRYPEKFYS D++E GEE+VILS+
Sbjct: 1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPRE------GGRGGAGGGRGAGRGRKRRSPSPSPSRYPEKFYS-DEEEGGEEEVILSD 169
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00350.1 ID=NO14G00350.1|Name=NO14G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=3104bp CCTTTCCCTACCCTTCCTTTCCCTTTACTGCTTACAGGTATGCACTCCAA GAGTGCATCGAGACTTTCGCAATATTACGCACACATTAGAATGAAGAAAG ACGAGGACAAGGACCGGGGGCTTCCCCTGTGAATTACGACTTCGAGGGAA TGCCGAAGTGTGGACAGCAGCCGTTGCGTTTCTCCCCCTTTCTTGTATAA TACATAGAAAGGGAAGATGAGACGGCGTGCATTTGCTCCCCCACAGGCTC GATACAGTCGGTGAGCAAAAAATATGGCGAAGAAGTGAGGGGAGGTTATT TTGTTCCCCCCCTCCTATAAACTAAAGAGTTAGAAAATGTTCACATTAAT ATCTAACTTCTCATAAGATGTCTCCTGTTTCTTCATGGCTCATGATTTAA TCCAGGCTAAGTATATATTTTGTTTACTTGACGGCTCGGTTAGTATCCTC CTCTTCCTCTTTCCCTCGCTCAAACAAAAGAAAGAGATCTCAAATCAAGG CTTGTGACATCTTCCTTGGTGCTGACAGGCTGCAAGTGATACAATCAGTG TAAGACTATTAAAAGTGTCTTTAAGTATGAATATAAAGTGTGTGAAAGGG ACTCCTTGAATGTGAAGAATACAGCGAAAGACAACGCCTGCGGAGCGAAC GAGCCGAAGCTCGGGACCCAAGGAGCCCGCCTGGCACCCACAGGACACTC TCGACCGAATGGAAAGGGAAAAAGAGGCAACCACTGTAGTCCATCTTCCT GTCAGTCCCCACCAGCCACCCATCTTGCCCAGATATGCCTGCTTTATCCG GCTCTGCATTGCGCTCTTGTGGTTTGGTCCGTGTGGAGAAAGAAACGAGC GGGATTGGGGAGAGGAGGGAGGCATTCATGGGTCTCCCCCTCTTCTGTTG TTTTCCCTCGCTCTTCTTTCTTTCATCGTGGGCGCAGTGTGTATGCGGTG TCCCCCCACACCCCACCCCGATCCCCACACACCGCACACAAAGCTGTGTG AGCTTCACAAAACAGGCTTATCCTCGTGGTGAGAGTGTGACAAGAGAGCA TGGTGGTTGCATGGTCAACAGCGACGCGGGCGAAGGAGGAGTGAGGAGGT CTGAAAACCTCCCTCCTAGTAGTGTCCTCCCCTTCCCCCGCGCGGTGCCG CGCCCCCTCACCAACTTCTCACGCCCCACTACATGTACAGACCACACAGA TAACCATCCGCACGTGCACGTGCCCCTGCCACCGCCCTTTTGTGCGTGGC TCGCCGGGCGTCTTTCCCCCCATCTTTTCTCCCGCCGGCCTCGTGCCACC CCTGTCAGCGCAAGCGCAAGGGCCACGCCAGACACTTAAAGAGGGTATGA TGGATCACCTACAGCAAACTAAGATCACCTCCGACTACCGCGGGATCCGC TGGCACAAGTGCAACCGAAAGTGGGAGGTCCAGATAAAGTACCGCGGGAA GAAGCTGTCACTTGGCTATTTCGACGATGAGTTGCAGGCGGCGCAGTGCT ACGACCGCCGGGCAAGGGAACTGTACGAGACGCCTCTACTCAATTTTCTT GTGGGAGGCAAGCTCAACCCGGACCGAAAGCGACGTGTGGACCCGCGCAG CCTCAGGCCACGCCGCATTCCCCCTCCCTGGTGTGCTGATAAATTTGATC CTCTCCCTCCCGGGCCTGTAGACGCTGAGGGAAACCCCTTGCAGATCGAA ATTCCGCGAAGTCGGGGGGGAGCTCGAGGGGGAGGACGGGGGGGAGGACG GGGAGGAGGAGCGGGGAGGGGGCGGAAGAGGAGGAGCCCAAGCCCGAGTC CAAGTCGATACCCGGAAAAATTTTACAGCGACGACGATGACGAGGCGGGA GAGGAAGACGTTATCCTCTCCGAGGATGAAGGGGAGGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGGAGCGCGGAGAAGGGTTTGTTGCAACTGC GGGTGAAGGTGCGGAGGGAGGGAGGAGGGGGAGCAGGAGGGAAGCCCCCT CTCCACTCTCCTCGCCTCCCTCCCGGCCCTCCCCCTCCTGTGGCCGAGCC TCCTGAGCACCAACCGTGGGACGGACCTTCCCTCCCTCCCCCCCCTCCTT CTATCGAGCCCCTCTCTTCCTCCTCCCTCAAGGATGGTAGCCTCGCCGCC GCCGCAGCAGCAGCTGCTGCTGCTGCTGCCGCCGCTGCGGGGGCCGGAGA CCGCAAAAGGAAGAAAATCCAACACAACAAGCAATCCCAACAGGCTGCGC AGACCACGGGCGGGGACGGGACAGGCGCCTCCCCACCCTCGTCCTCGTCC TCCCCCTCCTCGCCGGTCACCAGCTGGCCCGCCCCTCCTCCCCCCGGCCA CGCTGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTGCTGTGACAGGTGCCC CCCTTCCCCCCCCTCCAGAGGCTGGCGGTCGGCAGTGGACGCCTCAAGAG ATTCACTCCTACTACTATCCTCAGTGGCACAACCATCCTCCCTCCCACCC TCCCTCCTCCCAAGCTCCTGCCGCCGGCGCCGCGCAGCAGCAGCAGCAGG GAAATGGCCCTGCTTATCCTTTTCCTCACCCTCACTCGCTCCATCACCCC TCCCCCTACCATCCTTACGGCTTTCCTCCCCCTCCCCATGGCGCCTACCC CCCCTCCCTCCATCCCGCCTTCCCCCCTCCCAATCACCAATACCCGCACG CGCCTCCCCCTCCTCCCTTTGCCTCTGCCTACGTCCCTCCTCCTCCGCCT TCCTCCGTCCCGGCCTCGGACAGCACCACGGGCGAACCTCCTTCCTCCCT CCCTGCCTCCTCCTCCTCCTCCTCTGCCGGCAACACCACCATGGCCAGCA GCGCCAGCAGCACCAGCAGCAGCAACAGCCCTTCCCCCTCCCTCACAGCC GCCACCGCCACAGGAGCTGCCCCTCCCTCCCTCCCGTCCTCCTCCTCCTC CTCTGCGCAACAACACGACACCGCCACTGCCATCGGCGTCATGCCCCTCC CCCCCCCTCCTCCTCCGAGGGCGGGATGGAGGAAGGGCACCCGTCCTCTA CCTATGCGGGTGTGCACTGGGACGGAGGGAAAAAGGCTTGGAGCGCTTGG CTGA back to topprotein sequence of NO14G00350.1 >NO14G00350.1-protein ID=NO14G00350.1-protein|Name=NO14G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp MMDHLQQTKITSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELQAAQ CYDRRARELYETPLLNFLVGGKLNPDRKRRVDPRSLRPRRIPPPWCADKF DPLPPGPVDAEGNPLQIEIPRSRGGARGGGRGGGRGGGAGRGRKRRSPSP SPSRYPEKFYSDDDDEAGEEDVILSEDEGEGGGGGGGGGGGGSAEKGLLQ LRVKVRREGGGGAGGKPPLHSPRLPPGPPPPVAEPPEHQPWDGPSLPPPP PSIEPLSSSSLKDGSLAAAAAAAAAAAAAAAGAGDRKRKKIQHNKQSQQA AQTTGGDGTGASPPSSSSSPSSPVTSWPAPPPPGHAAAGAAAGAAAAVTG APLPPPPEAGGRQWTPQEIHSYYYPQWHNHPPSHPPSSQAPAAGAAQQQQ QGNGPAYPFPHPHSLHHPSPYHPYGFPPPPHGAYPPSLHPAFPPPNHQYP HAPPPPPFASAYVPPPPPSSVPASDSTTGEPPSSLPASSSSSSAGNTTMA SSASSTSSSNSPSPSLTAATATGAAPPSLPSSSSSSAQQHDTATAIGVMP LPPPPPPRAGWRKGTRPLPMRVCTGTEGKRLGALG* back to topmRNA from alignment at chr14:147724..151461+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00350.1 ID=NO14G00350.1|Name=NO14G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=3738bp|location=Sequence derived from alignment at chr14:147724..151461+ (Nannochloropsis oceanica) CCTTTCCCTACCCTTCCTTTCCCTTTACTGCTTACAGGTATGCACTCCAA
GAGTGCATCGAGACTTTCGCAATATTACGCACACATTAGAATGAAGAAAG
ACGAGGACAAGGACCGGGGGCTTCCCCTGTGAATTACGACTTCGAGGGAA
TGCCGAAGTGTGGACAGCAGCCGTTGCGTTTCTCCCCCTTTCTTGTATAA
TACATAGAAAGGGAAGATGAGACGGCGTGCATTTGCTCCCCCACAGGCTC
GATACAGTCGGTGAGCAAAAAATATGGCGAAGAAGTGAGGGGAGGTTATT
TTGTTCCCCCCCTCCTATAAACTAAAGAGTTAGAAAATGTTCACATTAAT
ATCTAACTTCTCATAAGATGTCTCCTGTTTCTTCATGGCTCATGATTTAA
TCCAGGCTAAGTATATATTTTGTTTACTTGACGGCTCGGTTAGTATCCTC
CTCTTCCTCTTTCCCTCGCTCAAACAAAAGAAAGAGATCTCAAATCAAGG
CTTGTGACATCTTCCTTGGTGCTGACAGGCTGCAAGTGATACAATCAGTG
TAAGACTATTAAAAGTGTCTTTAAGTATGAATATAAAGTGTGTGAAAGGG
ACTCCTTGAATGTGAAGAATACAGCGAAAGACAACGCCTGCGGAGCGAAC
GAGCCGAAGCTCGGGACCCAAGGAGCCCGCCTGGCACCCACAGGACACTC
TCGACCGAATGGAAAGGGAAAAAGAGGCAACCACTGTAGTCCATCTTCCT
GTCAGTCCCCACCAGCCACCCATCTTGCCCAGATATGCCTGCTTTATCCG
GCTCTGCATTGCGCTCTTGTGGTTTGGTCCGTGTGGAGAAAGAAACGAGC
GGGATTGGGGAGAGGAGGGAGGCATTCATGGGTCTCCCCCTCTTCTGTTG
TTTTCCCTCGCTCTTCTTTCTTTCATCGTGGGCGCAGTGTGTATGCGGTG
TCCCCCCACACCCCACCCCGATCCCCACACACCGCACACAAAGCTGTGTG
AGCTTCACAAAACAGGCTTATCCTCGTGGTGAGAGTGTGACAAGAGAGCA
TGGTGGTTGCATGGTCAACAGCGACGCGGGCGAAGGAGGAGTGAGGAGGT
CTGAAAACCTCCCTCCTAGTAGTGTCCTCCCCTTCCCCCGCGCGGTGCCG
CGCCCCCTCACCAACTTCTCACGCCCCACTACATGTACAGACCACACAGA
TAACCATCCGCACGTGCACGTGCCCCTGCCACCGCCCTTTTGTGCGTGGC
TCGCCGGGCGTCTTTCCCCCCATCTTTTCTCCCGCCGGCCTCGTGCCACC
CCTGTCAGCGCAAGCGCAAGGGCCACGCCAGACACTTAAAGAGGGTATGA
TGGATCACCTACAGCAAACTAAGATCACCTCCGACTACCGCGGTAAGCCC
TGTGTGTGTTTATGCGTCCTTTCTCCCCAATATGTCCTCCTGGCTTTTGT
GAGGCGCGTCCTCTCCGTCTACTTTTTCAAATTTTGTCTCCCAACCTGTG
AGAATGTGTCGGAGAGAAAGACAGATTCCCCCCAAAGGGACACACAGGGT
GCTTCCCCCGCTCGCCCATCATGAGTCTCTCAACCCTGACAGGACGCTCA
GGCCCGTGTACACACAAAATCACTCCTGGCAGGCATCCACACACTGAAAT
GCACCGAAAAATGGACAACATGACCCTTCCCTGTTTCAAAACTTTTCTCA
CCCCTCCCTCCCTCTCTCCCGTGTTACCCAGGGATCCGCTGGCACAAGTG
CAACCGAAAGTGGGAGGTCCAGATAAAGTACCGCGGGAAGAAGCTGTCAC
TTGGCTATTTCGACGATGAGTTGCAGGCGGCGCAGTGCTACGACCGCCGG
GCAAGGGAACTGTACGAGACGCCTCTACTCAATTTTCTTGTGGGAGGCAA
GCTCAACCCGGACCGAAAGCGACGTGTGGACCCGCGCAGCCTCAGGTAGG
TGTAGGTGGAGGGGTAAAAGGGAGGGTAGGAGAGAGGGAGGGGGGCGGCG
CTAGTGCTACGACAGAGGGGCTATAGTGAGAAAGTCATCTTCTGAATTGA
TGGCTGAGCCCGGGCCGGTTGTGATGCCGAAGGCATCCCTTTATCCCTCC
ACTCCTCCCTCCATCATGCTCCACATACCTTCTCTCATGCTTGGTGCATG
GCTGGCCTTGAACAATTTCGTCATTCAAACACTCACCCGTTCGCTTCCTT
CCCTCCCTCCTTCCCTCCCATCCTCCTTCCCTCCCTCCAGGCCACGCCGC
ATTCCCCCTCCCTGGTGTGCTGATAAATTTGATCCTCTCCCTCCCGGGCC
TGTAGACGCTGAGGGAAACCCCTTGCAGATCGAAATTCCGCGAAGTCGGG
GGGGAGCTCGAGGGGGAGGACGGGGGGGAGGACGGGGAGGAGGAGCGGGG
AGGGGGCGGAAGAGGAGGAGCCCAAGCCCGAGTCCAAGTCGATACCCGGA
AAAATTTTACAGCGACGACGATGACGAGGCGGGAGAGGAAGACGTTATCC
TCTCCGAGGATGAAGGGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGAGCGCGGAGAAGGGTTTGTTGCAACTGCGGGTGAAGGTGCGGAG
GGAGGGAGGAGGGGGAGCAGGAGGGAAGCCCCCTCTCCACTCTCCTCGCC
TCCCTCCCGGCCCTCCCCCTCCTGTGGCCGAGCCTCCTGAGCACCAACCG
TGGGACGGACCTTCCCTCCCTCCCCCCCCTCCTTCTATCGAGCCCCTCTC
TTCCTCCTCCCTCAAGGATGGTAGCCTCGCCGCCGCCGCAGCAGCAGCTG
CTGCTGCTGCTGCCGCCGCTGCGGGGGCCGGAGACCGCAAAAGGAAGAAA
ATCCAACACAACAAGCAATCCCAACAGGCTGCGCAGACCACGGGCGGGGA
CGGGACAGGCGCCTCCCCACCCTCGTCCTCGTCCTCCCCCTCCTCGCCGG
TCACCAGCTGGCCCGCCCCTCCTCCCCCCGGCCACGCTGCTGCTGGTGCT
GCTGCTGGTGCTGCTGCTGCTGTGACAGGTGCCCCCCTTCCCCCCCCTCC
AGAGGCTGGCGGTCGGCAGTGGACGCCTCAAGAGATTCACTCCTACTACT
ATCCTCAGTGGCACAACCATCCTCCCTCCCACCCTCCCTCCTCCCAAGCT
CCTGCCGCCGGCGCCGCGCAGCAGCAGCAGCAGGGAAATGGCCCTGCTTA
TCCTTTTCCTCACCCTCACTCGCTCCATCACCCCTCCCCCTACCATCCTT
ACGGCTTTCCTCCCCCTCCCCATGGCGCCTACCCCCCCTCCCTCCATCCC
GCCTTCCCCCCTCCCAATCACCAATACCCGCACGCGCCTCCCCCTCCTCC
CTTTGCCTCTGCCTACGTCCCTCCTCCTCCGCCTTCCTCCGTCCCGGCCT
CGGACAGCACCACGGGCGAACCTCCTTCCTCCCTCCCTGCCTCCTCCTCC
TCCTCCTCTGCCGGCAACACCACCATGGCCAGCAGCGCCAGCAGCACCAG
CAGCAGCAACAGCCCTTCCCCCTCCCTCACAGCCGCCACCGCCACAGGAG
CTGCCCCTCCCTCCCTCCCGTCCTCCTCCTCCTCCTCTGCGCAACAACAC
GACACCGCCACTGCCATCGGCGTCATGCCCCTCCCCCCCCCTCCTCCTCC
GAGGGCGGGATGGAGGAAGGGCACCCGTCCTCTACCTATGCGGGTGTGCA
CTGGGACGGAGGGAAAAAGGCTTGGAGCGCTTGGCTGA back to topCoding sequence (CDS) from alignment at chr14:147724..151461+ >NO14G00350.1 ID=NO14G00350.1|Name=NO14G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at chr14:147724..151461+ (Nannochloropsis oceanica) ATGATGGATCACCTACAGCAAACTAAGATCACCTCCGACTACCGCGGGAT CCGCTGGCACAAGTGCAACCGAAAGTGGGAGGTCCAGATAAAGTACCGCG GGAAGAAGCTGTCACTTGGCTATTTCGACGATGAGTTGCAGGCGGCGCAG TGCTACGACCGCCGGGCAAGGGAACTGTACGAGACGCCTCTACTCAATTT TCTTGTGGGAGGCAAGCTCAACCCGGACCGAAAGCGACGTGTGGACCCGC GCAGCCTCAGGCCACGCCGCATTCCCCCTCCCTGGTGTGCTGATAAATTT GATCCTCTCCCTCCCGGGCCTGTAGACGCTGAGGGAAACCCCTTGCAGAT CGAAATTCCGCGAAGTCGGGGGGGAGCTCGAGGGGGAGGACGGGGGGGAG GACGGGGAGGAGGAGCGGGGAGGGGGCGGAAGAGGAGGAGCCCAAGCCCG AGTCCAAGTCGATACCCGGAAAAATTTTACAGCGACGACGATGACGAGGC GGGAGAGGAAGACGTTATCCTCTCCGAGGATGAAGGGGAGGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGGAGCGCGGAGAAGGGTTTGTTGCAA CTGCGGGTGAAGGTGCGGAGGGAGGGAGGAGGGGGAGCAGGAGGGAAGCC CCCTCTCCACTCTCCTCGCCTCCCTCCCGGCCCTCCCCCTCCTGTGGCCG AGCCTCCTGAGCACCAACCGTGGGACGGACCTTCCCTCCCTCCCCCCCCT CCTTCTATCGAGCCCCTCTCTTCCTCCTCCCTCAAGGATGGTAGCCTCGC CGCCGCCGCAGCAGCAGCTGCTGCTGCTGCTGCCGCCGCTGCGGGGGCCG GAGACCGCAAAAGGAAGAAAATCCAACACAACAAGCAATCCCAACAGGCT GCGCAGACCACGGGCGGGGACGGGACAGGCGCCTCCCCACCCTCGTCCTC GTCCTCCCCCTCCTCGCCGGTCACCAGCTGGCCCGCCCCTCCTCCCCCCG GCCACGCTGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTGCTGTGACAGGT GCCCCCCTTCCCCCCCCTCCAGAGGCTGGCGGTCGGCAGTGGACGCCTCA AGAGATTCACTCCTACTACTATCCTCAGTGGCACAACCATCCTCCCTCCC ACCCTCCCTCCTCCCAAGCTCCTGCCGCCGGCGCCGCGCAGCAGCAGCAG CAGGGAAATGGCCCTGCTTATCCTTTTCCTCACCCTCACTCGCTCCATCA CCCCTCCCCCTACCATCCTTACGGCTTTCCTCCCCCTCCCCATGGCGCCT ACCCCCCCTCCCTCCATCCCGCCTTCCCCCCTCCCAATCACCAATACCCG CACGCGCCTCCCCCTCCTCCCTTTGCCTCTGCCTACGTCCCTCCTCCTCC GCCTTCCTCCGTCCCGGCCTCGGACAGCACCACGGGCGAACCTCCTTCCT CCCTCCCTGCCTCCTCCTCCTCCTCCTCTGCCGGCAACACCACCATGGCC AGCAGCGCCAGCAGCACCAGCAGCAGCAACAGCCCTTCCCCCTCCCTCAC AGCCGCCACCGCCACAGGAGCTGCCCCTCCCTCCCTCCCGTCCTCCTCCT CCTCCTCTGCGCAACAACACGACACCGCCACTGCCATCGGCGTCATGCCC CTCCCCCCCCCTCCTCCTCCGAGGGCGGGATGGAGGAAGGGCACCCGTCC TCTACCTATGCGGGTGTGCACTGGGACGGAGGGAAAAAGGCTTGGAGCGC TTGGCTGA back to top
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