NO14G00260.1, NO14G00260.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G00260.1
Unique Name	NO14G00260.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1749
Alignment location	chr14:92085..94455 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:92085..94455 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO14G00260.1 vs.
Match: EWM24772.1 (hypothetical protein Naga_100255g3 [Nannochloropsis gaditana])

HSP 1 Score: 208.0 bits (528), Expect = 8.000e-50
Identity = 124/178 (69.66%), Postives = 134/178 (75.28%), Query Frame = 0

Query:  420 LRAFASPEERRLRAVYRDLWERGLTIGSGSAYGADFTAYEGDPLAFHSFAAFIVLPADASLSARALSASVRLEQSVVKLLVYAICHDLKEEGEMEREEEEDGGRVKGKEEGGREQGGREEE---------------ERGDVGSRAAMTRFGWPRRSRVGGFMIEYMTLRFISVTRRME 583
            +  + S EER LRAVYRDLWERGLTIGSG AYGADFTAYEGDP+AFHSFAA IVLPA + LSARALSASVRLEQSVVKLLVYA+CH  + EGE   EE  +G   K   EGG E GG E E               + GDVG+RAA+TRFGWPRRS VGGFMIEYMTLRFISVTRRME
Sbjct:  413 MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCH--RREGE---EEHMEGRGEKRTGEGG-ENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584

The following BLAST results are available for this feature:

BLAST of NO14G00260.1 vs.

BLAST of NO14G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24772.1	8.000e-50	69.66	hypothetical protein Naga_100255g3 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G00260	NO14G00260	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G00260.1	NO14G00260.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G00260.1.cds1	NO14G00260.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00260.1.cds2	NO14G00260.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00260.1.cds3	NO14G00260.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00260.1.cds4	NO14G00260.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00260.1.cds5	NO14G00260.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:92085..94455-
coding sequence from alignment at chr14:92085..94455-

mRNA sequence

>NO14G00260.1 ID=NO14G00260.1|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
ATGGAAACCGGGGCAACGACAGGCGAAGGGGTAGAAGACATGCGGGGGAA
CAACGCGATGGAGGGTGGGGAGGGTGGGAAGGGTGGGGAGGTAGTCGAAG
GGATGGACGGGGGTGATGTCGTCACGCCACCAGCAGCACCTGGGGACAGC
AAGAACCAGCAACATGACGAAGAGGAGCAGCAGCAGCAGCAGCAGCAGCG
GCAGCAGCAGCAGGAGAAGGAAGAGGAAGAGGCGGATGGACAGCGGCTGC
CCTTCGACAATGCGCGTGGCGTTGATCCCCAGAAGGGAGGGAGAGCGGAG
GAGCAGGCAGACCTGTCGCCGACACCACCAGAAGTAGCAGAAGAGGAAAG
AAGACCAGACAATAAAGGAAAGGAGCATAGAGAAGAGGATGACGCCGAGC
CACCCTTGAAAAAGAAACGCGCCAAGGAGTTTATGTCCTGGTTTCCGTCG
TCGGCCCACATTGCCACTATGCCTCTTCCAGTCGCACCTTCCCTCCTTCC
CTGCCCTTCTCCTTCTCCTCCTCCTCGCCCTCCTCCTCATGCGTCACCTC
TATCCTCCTCCCATACCCTCCCACCATCCTCCAACGACGGATCTCCCCCT
ACTCCCCTCCTTCCCCCTCCTCCTCCTCCTCGTCCCCCGCCACCTGTTGT
AGAGGAAGTGGCCGACCGTCTTCCCCTCCGCACCGCCCATCTCACCGATG
ACGGCACAGCCCTAGTTTGGGACGCAGCCACGGCATTAGAACTACGGGGA
AAGCACCGCATGCTCTCTCGGTCGTTGGGCATGGGTTCCATCCGCGTCTC
GGCCGTGCAGAGGGCGGTTCCGGTCGCCCTCCTCCCACCGGCCCTAGCCC
TTGGCATTGAGGAAGGGCTGCTCTCAATGGCCACCGAGGCACCTCGCGCC
GACACAGACTACTTCGACAAGCGCGTCATGGACGAGAAGACAGTGAATGC
CATCGAGGAGGAAAGGCGAGAGAGGAAACGGAAACGCTACGAGTACGAAG
TCCAGAAAGCTCTTGAGCAGCAAGAGGCAGATACAGCAGGAGCGGCAGTA
GCAGCAGCAGAGTCAGCCCCTTTCCCTCCCTCCCTCGCTCCTTCTTCGAA
TGAAAGCGGAGATGGAGTATTGTTTATTGCAGCAAGAGAAGGAGGAGGAG
GGGAAGGGGAAAGGGAAAGCGAAGGAGGAAGAAGCGAAGGAGGAGAAGGC
AACCTTCGTTCCTCCCGTCCCACCCGAGAAGCTACGAAGGAGGAAGAGGC
GCAGCCCCTGCGAGCGTTCGCCTCGCCTGAGGAGAGGAGGTTGAGAGCCG
TCTACCGGGATCTGTGGGAGAGAGGGTTAACTATTGGGAGTGGCAGTGCG
TACGGCGCCGATTTCACCGCGTATGAAGGCGATCCCTTGGCTTTTCACTC
CTTTGCCGCCTTCATCGTCCTACCTGCGGATGCCTCTCTCTCCGCCAGAG
CCCTCTCGGCAAGCGTGCGCCTTGAGCAAAGCGTGGTCAAATTACTCGTG
TATGCCATTTGTCATGATTTAAAGGAAGAAGGGGAGATGGAAAGGGAGGA
AGAAGAGGACGGGGGAAGAGTGAAGGGGAAGGAGGAGGGAGGGAGAGAGC
AAGGGGGGAGGGAGGAGGAGGAGAGGGGGGATGTGGGAAGTCGGGCGGCG
ATGACGAGGTTTGGTTGGCCGAGAAGAAGTCGAGTGGGTGGATTTATGAT
TGAATACATGACACTGAGGTTCATCTCGGTAACGAGAAGGATGGAGTAA

protein sequence of NO14G00260.1

>NO14G00260.1-protein ID=NO14G00260.1-protein|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
METGATTGEGVEDMRGNNAMEGGEGGKGGEVVEGMDGGDVVTPPAAPGDS
KNQQHDEEEQQQQQQQRQQQQEKEEEEADGQRLPFDNARGVDPQKGGRAE
EQADLSPTPPEVAEEERRPDNKGKEHREEDDAEPPLKKKRAKEFMSWFPS
SAHIATMPLPVAPSLLPCPSPSPPPRPPPHASPLSSSHTLPPSSNDGSPP
TPLLPPPPPPRPPPPVVEEVADRLPLRTAHLTDDGTALVWDAATALELRG
KHRMLSRSLGMGSIRVSAVQRAVPVALLPPALALGIEEGLLSMATEAPRA
DTDYFDKRVMDEKTVNAIEEERRERKRKRYEYEVQKALEQQEADTAGAAV
AAAESAPFPPSLAPSSNESGDGVLFIAAREGGGGEGERESEGGRSEGGEG
NLRSSRPTREATKEEEAQPLRAFASPEERRLRAVYRDLWERGLTIGSGSA
YGADFTAYEGDPLAFHSFAAFIVLPADASLSARALSASVRLEQSVVKLLV
YAICHDLKEEGEMEREEEEDGGRVKGKEEGGREQGGREEEERGDVGSRAA
MTRFGWPRRSRVGGFMIEYMTLRFISVTRRME*

mRNA from alignment at chr14:92085..94455-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G00260.1 ID=NO14G00260.1|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2371bp|location=Sequence derived from alignment at chr14:92085..94455- (Nannochloropsis oceanica)
ATGGAAACCGGGGCAACGACAGGCGAAGGGGTAGAAGACATGCGGGGGAA
CAACGCGATGGAGGGTGGGGAGGGTGGGAAGGGTGGGGAGGTAGTCGAAG
GGATGGACGGGGGTGATGTCGTCACGCCACCAGCAGCACCTGGGGACAGC
AAGAACCAGCAACATGACGAAGAGGAGCAGCAGCAGCAGCAGCAGCAGCG
GCAGCAGCAGCAGGAGAAGGAAGAGGAAGAGGCGGATGGACAGCGGCTGC
CCTTCGACAATGCGCGTGGCGTTGATCCCCAGAAGGGAGGGAGAGCGGAG
GAGCAGGCAGACCTGTCGCCGACACCACCAGAAGTAGCAGAAGAGGAAAG
AAGACCAGACAATAAAGGAAAGGAGCATAGAGAAGAGGATGACGCCGAGC
CACCCTTGAAAAAGAAACGCGCCAAGGAGTTTATGTCCTGGTTTCCGTCG
TCGGCCCACATTGCCACTATGCCTCTTCCAGTCGCACCTTCCCTCCTTCC
CTGCCCTTCTCCTTCTCCTCCTCCTCGCCCTCCTCCTCATGCGTCACCTC
TATCCTCCTCCCATACCCTCCCACCATCCTCCAACGACGGATCTCCCCCT
ACTCCCCTCCTTCCCCCTCCTCCTCCTCCTCGTCCCCCGCCACCTGTTGT
AGAGGAAGTGGCCGACCGTCTTCCCCTCCGCACCGCCCATCTCACCGATG
ACGGCACAGCCCTAGTTTGGGACGCAGCCACGGCATTAGAACTACGGGGA
AAGCACCGCATGCTCTCTCGGTCGTTGGGCATGGGTTCCATCCGCGTCTC
GGCCGTGCAGAGGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGGAAGGAG
CGATTGAGGGAGGAAGAAAAGGGTGGAAGGAGGGAAGGAGGGGCTCACAT
TAATTCTACACAATTAAAGCATCAGTAACACATATACGCCAAAACATCTT
TCCCTCCCTCCCTCCCTTTCCCTCCCACCCCTCCCTTCCCAAGGCGGTTC
CGGTCGCCCTCCTCCCACCGGCCCTAGCCCTTGGCATTGAGGAAGGGCTG
CTCTCAATGGCCACCGAGGCACCTCGCGCCGACACAGACTACTTCGACAA
GCGCGTCATGGACGAGAAGACAGTGAATGCCATCGAGGAGGAAAGGCGAG
AGAGGAAACGGTAGGTAGGATGAGAGGGAGGAAGGGAGAGTAGTACTTCT
GGCAGGGGAAAGATGGCTCACAGTCTTTCCCTCCCTCCCTCCCTCCATTC
ATCCATCCATCCCTCCCTCGAAAGGAAACGCTACGAGTACGAAGTCCAGA
AAGCTCTTGAGCAGCAAGAGGCAGATACAGCAGGAGCGGCAGTAGCAGCA
GCAGAGTCAGCCCCTTTCCCTCCCTCCCTCGCTCCTTCTTCGAATGAAAG
CGGAGATGGAGTATTGTTTATTGCAGCAAGAGAAGGAGGAGGAGGGGAAG
GGGAAAGGGAAAGCGAAGGAGGAAGAAGCGAAGGAGGAGAAGGCAACCTT
CGTTCCTCCCGTCCCACCCGAGAAGCTACGAAGGAGGAAGAGGCGCAGCC
GTCCGACACCACCCTCCCTCCCATCCTCCCTCCCTCCCTTCCTCCTCTCC
TCGCCGACGGTCTGCCTATTCCTGACCCCCCCCCGCTCCTGTCCTTGCCT
ACCTCGAAGCCACCGCCGCCAGGCAACAAAGAATTGCCTCCCACTGCCTC
ATCCCTCCCCCTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCC
GCTTGTCCGTCCTTTGACAAGCCTGCGAGCGTTCGCCTCGCCTGAGGAGA
GGAGGTTGAGAGCCGTCTACCGGGATCTGTGGGAGAGAGGGTTAACTATT
GGGAGTGGCAGTGCGTACGGCGCCGATTTCACCGCGTATGAAGGTAGGTT
TAATCTGCCTCCCTCCCTCCCTCCCTAGATGATGGAGGGTACTTCAAGCA
TGTACACACAATGCACCTTCCTTCCCTTCCCACTATCCGATTACCCTCAG
GCGATCCCTTGGCTTTTCACTCCTTTGCCGCCTTCATCGTCCTACCTGCG
GATGCCTCTCTCTCCGCCAGAGCCCTCTCGGCAAGCGTGCGCCTTGAGCA
AAGCGTGGTCAAATTACTCGTGTATGCCATTTGTCATGATTTAAAGGAAG
AAGGGGAGATGGAAAGGGAGGAAGAAGAGGACGGGGGAAGAGTGAAGGGG
AAGGAGGAGGGAGGGAGAGAGCAAGGGGGGAGGGAGGAGGAGGAGAGGGG
GGATGTGGGAAGTCGGGCGGCGATGACGAGGTTTGGTTGGCCGAGAAGAA
GTCGAGTGGGTGGATTTATGATTGAATACATGACACTGAGGTTCATCTCG
GTAACGAGAAGGATGGAGTAA

Coding sequence (CDS) from alignment at chr14:92085..94455-

>NO14G00260.1 ID=NO14G00260.1|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr14:92085..94455- (Nannochloropsis oceanica)
ATGGAAACCGGGGCAACGACAGGCGAAGGGGTAGAAGACATGCGGGGGAA
CAACGCGATGGAGGGTGGGGAGGGTGGGAAGGGTGGGGAGGTAGTCGAAG
GGATGGACGGGGGTGATGTCGTCACGCCACCAGCAGCACCTGGGGACAGC
AAGAACCAGCAACATGACGAAGAGGAGCAGCAGCAGCAGCAGCAGCAGCG
GCAGCAGCAGCAGGAGAAGGAAGAGGAAGAGGCGGATGGACAGCGGCTGC
CCTTCGACAATGCGCGTGGCGTTGATCCCCAGAAGGGAGGGAGAGCGGAG
GAGCAGGCAGACCTGTCGCCGACACCACCAGAAGTAGCAGAAGAGGAAAG
AAGACCAGACAATAAAGGAAAGGAGCATAGAGAAGAGGATGACGCCGAGC
CACCCTTGAAAAAGAAACGCGCCAAGGAGTTTATGTCCTGGTTTCCGTCG
TCGGCCCACATTGCCACTATGCCTCTTCCAGTCGCACCTTCCCTCCTTCC
CTGCCCTTCTCCTTCTCCTCCTCCTCGCCCTCCTCCTCATGCGTCACCTC
TATCCTCCTCCCATACCCTCCCACCATCCTCCAACGACGGATCTCCCCCT
ACTCCCCTCCTTCCCCCTCCTCCTCCTCCTCGTCCCCCGCCACCTGTTGT
AGAGGAAGTGGCCGACCGTCTTCCCCTCCGCACCGCCCATCTCACCGATG
ACGGCACAGCCCTAGTTTGGGACGCAGCCACGGCATTAGAACTACGGGGA
AAGCACCGCATGCTCTCTCGGTCGTTGGGCATGGGTTCCATCCGCGTCTC
GGCCGTGCAGAGGGCGGTTCCGGTCGCCCTCCTCCCACCGGCCCTAGCCC
TTGGCATTGAGGAAGGGCTGCTCTCAATGGCCACCGAGGCACCTCGCGCC
GACACAGACTACTTCGACAAGCGCGTCATGGACGAGAAGACAGTGAATGC
CATCGAGGAGGAAAGGCGAGAGAGGAAACGGAAACGCTACGAGTACGAAG
TCCAGAAAGCTCTTGAGCAGCAAGAGGCAGATACAGCAGGAGCGGCAGTA
GCAGCAGCAGAGTCAGCCCCTTTCCCTCCCTCCCTCGCTCCTTCTTCGAA
TGAAAGCGGAGATGGAGTATTGTTTATTGCAGCAAGAGAAGGAGGAGGAG
GGGAAGGGGAAAGGGAAAGCGAAGGAGGAAGAAGCGAAGGAGGAGAAGGC
AACCTTCGTTCCTCCCGTCCCACCCGAGAAGCTACGAAGGAGGAAGAGGC
GCAGCCCCTGCGAGCGTTCGCCTCGCCTGAGGAGAGGAGGTTGAGAGCCG
TCTACCGGGATCTGTGGGAGAGAGGGTTAACTATTGGGAGTGGCAGTGCG
TACGGCGCCGATTTCACCGCGTATGAAGGCGATCCCTTGGCTTTTCACTC
CTTTGCCGCCTTCATCGTCCTACCTGCGGATGCCTCTCTCTCCGCCAGAG
CCCTCTCGGCAAGCGTGCGCCTTGAGCAAAGCGTGGTCAAATTACTCGTG
TATGCCATTTGTCATGATTTAAAGGAAGAAGGGGAGATGGAAAGGGAGGA
AGAAGAGGACGGGGGAAGAGTGAAGGGGAAGGAGGAGGGAGGGAGAGAGC
AAGGGGGGAGGGAGGAGGAGGAGAGGGGGGATGTGGGAAGTCGGGCGGCG
ATGACGAGGTTTGGTTGGCCGAGAAGAAGTCGAGTGGGTGGATTTATGAT
TGAATACATGACACTGAGGTTCATCTCGGTAACGAGAAGGATGGAGTAA

Synonyms

Publications