NO14G00210.1, NO14G00210.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G00210.1
Unique Name	NO14G00210.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2476
Alignment location	chr14:76126..78601 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:76126..78601 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO14G00210.1 vs.
Match: XP_002184736.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; EEC43795.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 252.7 bits (644), Expect = 2.700e-63
Identity = 234/563 (41.56%), Postives = 315/563 (55.95%), Query Frame = 0

Query:    1 MGGAGGLLEVGGKG-APGGMVGVGRAGGGEAPDGVLTVPTVGPADESPGGTVADTSVGLLLGDADGEADGLLDGDADGLLDGDDDGLADG----DAEGISVGETLPPPGLED-TAVELLDGDADGLIESKDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADG----DAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGETLPPPGLEDTAVELLDGDADGLIESKDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGLLDGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEVDGLLEGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGLLLGDADGE----ADGLLEGDADGLLDGDDDRLADGDAECTSVGLIDCEAEG 550
            +G A G+ +    G A G  +G          +G      +G A+    G    T+ G+ LG A+G ADG + G A+G+ DG  DG ADG     AEGI++G      G  D  A+   +G ADG      +G+ADG  +G + G  LG A+G A+G  EG A+G+ +G  +G ADG A G + G+  G  DG ADG   G A+G+ DG  DG ADG     AEGI+ G   G ADG A+G  EG ADG   G  +G+ADG A+G + G +L       TA  + +G A+G  E    G+++G AEG + G  LG A+G ADG  +G ADG   G  +G+ADG  +G + G  LG A+G A+G  +G ADG+ +G  +G ADG A G + G+  G ADG ADG   G A+G+     +G A+G AEGIS G   G ADG   G+ EG ADG  DG  DG + G AEGI+ G   G A+G A+G +EG+ADG   G  +G+ADG  +G + G   GDA+G     ADG  EG +DG  DG +   +DGDAE +S+G  +  AEG
Sbjct:  186 LGTAEGIADGTPDGTADGAWLGTAEGIALGTAEGCADGAALGTAEGCADGAALGTAEGIALGTAEGCADGAVLGTAEGIADGTPDGTADGAWLGTAEGIALGTA---EGCADGAALGTAEGCADGAALGTAEGIADGTTDGTADGAWLGTAEGIAEGTAEGCAEGISEGTAEGCADGAALGTADGIADGTTDGTADGAWLGTAEGIADGTTDGTADGASLGTAEGIAEGTTEGTADGIAEGTAEGSADGAALGTAEGIADGTADGTADGASL------GTAEGIAEGTAEGCAE----GISEGTAEGCADGAALGIAEGIADGTTDGTADGASLGTAEGIADGTTDGTADGASLGTAEGIAEGTTEGTADGIAEGTAEGSADGAALGTAEGIADGTADGTADGASLGTAEGIA----EGTAEGCAEGISEGTAEGCADGAALGIAEGIADGTTDGTADGASLGTAEGIAEGTTEGTAEGIAEGPVEGNADGAALGIAEGIADGTTDGTADGASDGDAEGSALGTADGRAEGSSDGSADGSEVGTSDGDAEGSSLGTAEGTAEG 731

The following BLAST results are available for this feature:

BLAST of NO14G00210.1 vs.

BLAST of NO14G00210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002184736.1	2.700e-63	41.56	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G00210	NO14G00210	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G00210.1	NO14G00210.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G00210.1.cds1	NO14G00210.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:76126..78601-
coding sequence from alignment at chr14:76126..78601-

mRNA sequence

>NO14G00210.1 ID=NO14G00210.1|Name=NO14G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp
ATGGGCGGAGCAGGCGGTCTGCTCGAGGTAGGCGGCAAAGGGGCTCCCGG
TGGGATGGTGGGCGTCGGGAGAGCTGGCGGCGGAGAGGCCCCTGATGGGG
TGCTGACCGTTCCCACCGTCGGCCCTGCCGACGAATCTCCCGGTGGAACA
GTAGCTGATACCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGC
AGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGACG
ACGGGCTCGCAGATGGAGACGCAGAGGGCATCTCCGTCGGTGAAACGCTA
CCGCCACCAGGACTCGAAGACACCGCTGTTGAACTGCTCGACGGAGACGC
TGACGGGCTGATTGAGAGCAAAGATGACGGGCTCGCGGATGGAGACGCAG
AGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGAC
GGACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGG
GCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCG
ACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTG
CTCGACGGAGACGACGACGGGCTCGCAGATGGAGACGCAGAGGGCATCTC
CGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCG
AGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCAGAT
GGAGACGCAGAGGGCATCTCCGTCGGTGAAACGCTACCGCCACCAGGACT
CGAAGACACCGCTGTTGAACTGCTCGACGGAGACGCTGACGGGCTGATTG
AGAGCAAAGATGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTC
GGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGG
AGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAG
ACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAA
GCAGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGA
CGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTGCTGC
TAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGAC
GGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGG
CATCTCCGTCGGGCTGCTGCTAGGCGACGCCGACGGAGAAGTAGACGGAC
TGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTC
GCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGC
CGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGCTCG
ACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTC
GGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGG
AGACGCTGACGGGCTGCTCGACGGAGACGACGATAGGCTCGCGGATGGAG
ACGCAGAGTGCACCTCTGTCGGGCTAATTGATTGCGAGGCCGAGGGAGAG
ACGGTGGCGTTGGAGAGATCTTGCATGAAGCGATAGACGCGTTCTGATTT
TTCATTCCTCAGTAAATTCTCGTTGAGGGTAGGCTGGTAGACATGGTCGG
TTTCTTGGAGATGGGCGGCCGGTAGGAGTGACAGGATGAGGCAGGCCAGG
AGGCAGCCTATTTTGGTTATCATCATGGGAGGAAGATTCTTCATTTTCTT
TCCTGTATGATGATGTTTGTGAATTTTAGACGCTTTATGAATTTTGTTTC
ATCGTGTGTATGATATGGGCACGCTCGTGGTTATCTGAGGGACGCCTTCT
CTCTGAGAGAGTTGCGAGCCCAGGACACGGCCTTATGTGAGTGTGTAAGC
AGACGCTTGTCGTCACGTCCCCGTGTACAGGGGATGGGTACTGGCATTGA
TGTATCATAAAGAATCAAATTAAGTGCGGCGATGAACAAGGAAGACATCT
CGTAGGGTAGAAACCATACCACAAGACAATATTGCTGGGCACGCACAACA
ATTCGGCGTCCACTGCTGTAGTCTCTACAGTCCACCACTGTGTGTAGTCA
TTCATGTGTTTTGAGGGGCGATAAAGTGAGTCGCACTGTCTTTACACTGG
ACACCTGACTGTCATATCAGTAGCTAACACTCGGCGCCTACACTTCTCGC
CCTGCACAACATGCCCCCATGCGCGTCATGCATTTCAAGTACACACCACA
GACACTCCGTGCGTTAATGCGCGCCACTTGGTGAATCCTCTGACAGAACA
AATTGAGGATTTCAAATCCACCTCGTCCTCCTTTTCAAGAAATTTTGATT
CATCCAATAACCATCAACAATTTCAT

protein sequence of NO14G00210.1

>NO14G00210.1-protein ID=NO14G00210.1-protein|Name=NO14G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MGGAGGLLEVGGKGAPGGMVGVGRAGGGEAPDGVLTVPTVGPADESPGGT
VADTSVGLLLGDADGEADGLLDGDADGLLDGDDDGLADGDAEGISVGETL
PPPGLEDTAVELLDGDADGLIESKDDGLADGDAEGISVGLLLGDADGEAD
GLLEGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGL
LDGDDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLAD
GDAEGISVGETLPPPGLEDTAVELLDGDADGLIESKDDGLADGDAEGISV
GLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGLLLGDADGE
ADGLLDGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGLLEGDAD
GLLDGDDDGLADGDAEGISVGLLLGDADGEVDGLLEGDADGLLDGDDDGL
ADGDAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISV
GLLLGDADGEADGLLEGDADGLLDGDDDRLADGDAECTSVGLIDCEAEGE
TVALERSCMKR*

mRNA from alignment at chr14:76126..78601-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G00210.1 ID=NO14G00210.1|Name=NO14G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp|location=Sequence derived from alignment at chr14:76126..78601- (Nannochloropsis oceanica)
ATGGGCGGAGCAGGCGGTCTGCTCGAGGTAGGCGGCAAAGGGGCTCCCGG
TGGGATGGTGGGCGTCGGGAGAGCTGGCGGCGGAGAGGCCCCTGATGGGG
TGCTGACCGTTCCCACCGTCGGCCCTGCCGACGAATCTCCCGGTGGAACA
GTAGCTGATACCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGC
AGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGACG
ACGGGCTCGCAGATGGAGACGCAGAGGGCATCTCCGTCGGTGAAACGCTA
CCGCCACCAGGACTCGAAGACACCGCTGTTGAACTGCTCGACGGAGACGC
TGACGGGCTGATTGAGAGCAAAGATGACGGGCTCGCGGATGGAGACGCAG
AGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGAC
GGACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGG
GCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCG
ACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTG
CTCGACGGAGACGACGACGGGCTCGCAGATGGAGACGCAGAGGGCATCTC
CGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCG
AGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCAGAT
GGAGACGCAGAGGGCATCTCCGTCGGTGAAACGCTACCGCCACCAGGACT
CGAAGACACCGCTGTTGAACTGCTCGACGGAGACGCTGACGGGCTGATTG
AGAGCAAAGATGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTC
GGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGG
AGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAG
ACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAA
GCAGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGA
CGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTGCTGC
TAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGAC
GGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGG
CATCTCCGTCGGGCTGCTGCTAGGCGACGCCGACGGAGAAGTAGACGGAC
TGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTC
GCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGC
CGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGCTCG
ACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTC
GGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGG
AGACGCTGACGGGCTGCTCGACGGAGACGACGATAGGCTCGCGGATGGAG
ACGCAGAGTGCACCTCTGTCGGGCTAATTGATTGCGAGGCCGAGGGAGAG
ACGGTGGCGTTGGAGAGATCTTGCATGAAGCGATAGACGCGTTCTGATTT
TTCATTCCTCAGTAAATTCTCGTTGAGGGTAGGCTGGTAGACATGGTCGG
TTTCTTGGAGATGGGCGGCCGGTAGGAGTGACAGGATGAGGCAGGCCAGG
AGGCAGCCTATTTTGGTTATCATCATGGGAGGAAGATTCTTCATTTTCTT
TCCTGTATGATGATGTTTGTGAATTTTAGACGCTTTATGAATTTTGTTTC
ATCGTGTGTATGATATGGGCACGCTCGTGGTTATCTGAGGGACGCCTTCT
CTCTGAGAGAGTTGCGAGCCCAGGACACGGCCTTATGTGAGTGTGTAAGC
AGACGCTTGTCGTCACGTCCCCGTGTACAGGGGATGGGTACTGGCATTGA
TGTATCATAAAGAATCAAATTAAGTGCGGCGATGAACAAGGAAGACATCT
CGTAGGGTAGAAACCATACCACAAGACAATATTGCTGGGCACGCACAACA
ATTCGGCGTCCACTGCTGTAGTCTCTACAGTCCACCACTGTGTGTAGTCA
TTCATGTGTTTTGAGGGGCGATAAAGTGAGTCGCACTGTCTTTACACTGG
ACACCTGACTGTCATATCAGTAGCTAACACTCGGCGCCTACACTTCTCGC
CCTGCACAACATGCCCCCATGCGCGTCATGCATTTCAAGTACACACCACA
GACACTCCGTGCGTTAATGCGCGCCACTTGGTGAATCCTCTGACAGAACA
AATTGAGGATTTCAAATCCACCTCGTCCTCCTTTTCAAGAAATTTTGATT
CATCCAATAACCATCAACAATTTCAT

Coding sequence (CDS) from alignment at chr14:76126..78601-

>NO14G00210.1 ID=NO14G00210.1|Name=NO14G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at chr14:76126..78601- (Nannochloropsis oceanica)
ATGGGCGGAGCAGGCGGTCTGCTCGAGGTAGGCGGCAAAGGGGCTCCCGG
TGGGATGGTGGGCGTCGGGAGAGCTGGCGGCGGAGAGGCCCCTGATGGGG
TGCTGACCGTTCCCACCGTCGGCCCTGCCGACGAATCTCCCGGTGGAACA
GTAGCTGATACCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGC
AGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGACG
ACGGGCTCGCAGATGGAGACGCAGAGGGCATCTCCGTCGGTGAAACGCTA
CCGCCACCAGGACTCGAAGACACCGCTGTTGAACTGCTCGACGGAGACGC
TGACGGGCTGATTGAGAGCAAAGATGACGGGCTCGCGGATGGAGACGCAG
AGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGAC
GGACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGG
GCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCG
ACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTG
CTCGACGGAGACGACGACGGGCTCGCAGATGGAGACGCAGAGGGCATCTC
CGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCG
AGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCAGAT
GGAGACGCAGAGGGCATCTCCGTCGGTGAAACGCTACCGCCACCAGGACT
CGAAGACACCGCTGTTGAACTGCTCGACGGAGACGCTGACGGGCTGATTG
AGAGCAAAGATGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTC
GGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGG
AGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAG
ACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAA
GCAGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGA
CGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTGCTGC
TAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGAC
GGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGG
CATCTCCGTCGGGCTGCTGCTAGGCGACGCCGACGGAGAAGTAGACGGAC
TGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTC
GCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGC
CGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGCTCG
ACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTC
GGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGG
AGACGCTGACGGGCTGCTCGACGGAGACGACGATAGGCTCGCGGATGGAG
ACGCAGAGTGCACCTCTGTCGGGCTAATTGATTGCGAGGCCGAGGGAGAG
ACGGTGGCGTTGGAGAGATCTTGCATGAAGCGATAG

Synonyms

Publications