NO14G00020.3, NO14G00020.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00020.3
Unique NameNO14G00020.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2640
Alignment locationchr14:2645..6061 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:2645..6061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00020.3 vs.
Match: EWM22869.1 (major facilitator superfamily [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 5.400e-36
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 0 
Query:   64 LAYWRWLPPSVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNGGLALFPLLAAAIYKAADSRYLLHVELLFVCLAIVGVFCGLLLNFLDAR 165
            + YWR L P+VPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQN GLALFPL+AAAIYKAA S Y+ HVELLFV LA+VG+  GL LN LD+R
Sbjct:    1 MPYWRSLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSR 101
The following BLAST results are available for this feature:
BLAST of NO14G00020.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22869.15.400e-3681.19major facilitator superfamily [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00020NO14G00020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00020.3NO14G00020.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00020.3.cds1NO14G00020.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00020.3.cds2NO14G00020.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00020.3.cds3NO14G00020.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00020.3.cds4NO14G00020.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00020.3 ID=NO14G00020.3|Name=NO14G00020.3|organism=Nannochloropsis oceanica|type=mRNA|length=2640bp
CAAACCTTTGCACTGTAGATGGATTAATATCTGCTGATGTTCCATGAATA
ATTGTTTGTTTCGGAGTCTTTTCTCACAATTGCTTGACGGCAGACCCGCA
GGCCAAAGCTGCTTTCAAGGACCGGGACCGGGTTAGGGTTAGGGTTAGGT
AAGGGGGGGGGGCGTGACGAGAGGAGGACGCATAGGCTAACCCCATCCAT
CCCTTTTATCCTCTCTCCTTCTCTCCCTTTCTTCCCCACTTTTTCGCTCT
CTCCTGTCGTAGGAGCGCGACTACTTCCGCATCCCCCCCCCCTCCTGCAC
CCTCACCAACAGCAGCGCCTGCCAGTCGCCCTCCAACCAGCCCTCTTCTG
ACTGCCCATCCTCATCGAATTTCCAGCCGCCTCTGCCTGACATGATCCAA
GTGAAAGACATCGACTGCTCCCTGGAGGAGTGGAGCGGGCTCGGTGCTTG
CACTCAGGTGTTCTGTGAGGTGCAAAAGACAGGCATTAGGCAGAGCGACA
GGGTGAGAAGGGGAGAAGAAGGGGAGGGTGGGGCTGGGCAGAGGGAGGAC
CAGGACTGAGATACCATGAGGGAGGAGGAGGGCGACATGCCGTGCATATT
CTCATGCGGGTGCAGACCACCGATCCTTTCAACCCCTCCCCCCCTTCATC
TCTCCTCCCCTACATCATGTCCATCCCCTACACCATCTCTGCCGTCCTCT
CTCCCTTTCTGGGCTTGGCCGTCGATCGCTTCGGTCGGCGTGCTGTGGTG
ATCGCTCTGGCGCCCGTGGTGCTTATTGGCGTGCATCTTTCGCTGGCATA
CTGGCGTTGGCTTCCTCCGTCGGTGCCTCTCGTCGGACAAGGCCTAGCTT
ACAGCGCCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCC
GAGGATCGGGTCGGGGTGGCGTATGGCCTCACCACCGCCATTCAAAATGG
AGGCCTGGCCCTTTTTCCTCTCTTGGCGGCGGCTATCTACAAGGCCGCCG
ATTCTCGCTACCTTCTTCATGTGGAGCTTTTGTTTGTGTGCTTGGCTATA
GTGGGCGTCTTCTGTGGTCTACTACTCAACTTCCTGGATGCACGGTACGT
ACCAAGGGAGGGGATGGAAAGAGTGGAGGAACAGGTAGATCCAACCGACC
TTTGGCTGTGTCCCGAGCACCTTGTGAGGACTTTTATTCCTTCTTCTTCC
TTTGCCCCTTTCATCCCTCACCTCCTTTCTTCTACCGCAGCGCCTGTCAC
ATCCTGAACCGACCCCAGCCCGCTGGAGGAGGAGGAGGGCGGGGCGGGGA
AGAAAGACCTGGAGCGAAGAGCAACAAGAAAAGGGAGGCATTGCTCCATG
AGGTAGTGGAAGGAGTGAAGGTGCCGATATCTTCTTCTTCTTCCCCCATC
TACGTGTAGGATAGCTTGAATCTGACTTCTGTTAAAGGAAAGGGCTCTTA
TGTATGTAAAACCCAGCCATGCATGACAAAACTGTGAGTGTAAGGTAAAG
ACATGGATAATAGCAGACGAGGGCAACAGCGTGAGCGCAGGACCAAAGGG
ACGGAAGAAGCGCATGAGGATGGAGGAACCGGTTGTGACTTGTCCTTCAC
ATTGACATATCACAAAACACAAGGCAGAGGAGCAACGAGAACAAAGAGAG
AGAGGTATTACGATTTAACTTTTATTTCCTCCTAAGCAATAGCAATGTAG
TCATGTACCTGTACATTCAGACGGGATAGACGGGTGCAGTGAACTGGGTG
GCCAGGCCTCTTCACCAAAGTACTAACAGTACACAAGTAGCATTGAATCC
CTTGCCTCCCTCCACTTCTCCATCTCTTCCTCTTGCAATTATCACTTTCC
CATAACCTTCTTTACTGGTAGTATTTGGTTCCTTTCGGTCAATTAATAGT
GGTTTTGCTCGGGGGCGTCACGCCATAGCAGATAAGAGCTGACATGAGCA
GCCACTCTTCCTCTTGCTTGAGCTCTTGCGAATAATGAACAAGAAAATTC
CCCTTGCTTTTCCTCGCCCTTGAGGACACCCTCCCTCCCATTGCGCGCTG
CTTCAGCAACTCAGCGATTTGAGCCAGCCGGAAACTACCACGACATGTCC
AGTTCTTGAGTTTGTCCTCCGAATATGCTTTGCTCTGGTCCACGGCGCCG
CCCCCAGAGACCACCTCCGTCCCAGAGACGGAGGGAGGCAGGGAGGTAAG
GGCGGAAGGGACGGAGGAGTGGACGTGGAGATGCCTCGGGTGGTGACATC
GACACGAATTCTGACGGCATTAGCCCTGCGGATATGGCAGCGCAAGATCG
GCCGGGTAGGGTTAACGCCGGGGGAGGAGGAGGGGAATTAGAAAAGTGGG
CGAATCTCATGCAGGATGATTTCAAGGCGATGTGTATGTGTGGAAGTGGG
AAGATTTATTGTTATACCTGGCCACATCCACCTCTTCCTTTTGAGTGGCA
TGATGGTTTGATAGCGGTGAGCACTACTATCACCATCATCAGTGGCAGAG
CATCACCACCCCAGGCGGCAGCTAGGCAGCAGGAGCAGCGGCAGTTTCAC
GACATATATTCTTTGGCGTTCCTTGACAGTGTCTCTCTAAGGTTTCGATC
AGAGGAATACCATAATATGTTAAATGATGGAGAAAAGGCC
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protein sequence of NO14G00020.3

>NO14G00020.3-protein ID=NO14G00020.3-protein|Name=NO14G00020.3|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MRVQTTDPFNPSPPSSLLPYIMSIPYTISAVLSPFLGLAVDRFGRRAVVI
ALAPVVLIGVHLSLAYWRWLPPSVPLVGQGLAYSAFAAVLWPSVPFTVPE
DRVGVAYGLTTAIQNGGLALFPLLAAAIYKAADSRYLLHVELLFVCLAIV
GVFCGLLLNFLDARYVPREGMERVEEQVDPTDLWLCPEHLVRTFIPSSSF
APFIPHLLSSTAAPVTS*
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mRNA from alignment at chr14:2645..6061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00020.3 ID=NO14G00020.3|Name=NO14G00020.3|organism=Nannochloropsis oceanica|type=mRNA|length=3417bp|location=Sequence derived from alignment at chr14:2645..6061- (Nannochloropsis oceanica)
CAAACCTTTGCACTGTAGATGGATTAATATCTGCTGATGTTCCATGAATA
ATTGTTTGTTTCGGAGTCTTTTCTCACAATTGCTTGACGGCAGACCCGCA
GGCCAAAGCTGCTTTCAAGGACCGGGACCGGGTTAGGGTTAGGGTTAGGT
AAGGGGGGGGGGCGTGACGAGAGGAGGACGCATAGGCTAACCCCATCCAT
CCCTTTTATCCTCTCTCCTTCTCTCCCTTTCTTCCCCACTTTTTCGCTCT
CTCCTGTCGTAGGAGCGCGACTACTTCCGCATCCCCCCCCCCTCCTGCAC
CCTCACCAACAGCAGCGCCTGCCAGTCGCCCTCCAACCAGCCCTCTTCTG
ACTGCCCATCCTCATCGAATTTCCAGCCGCCTCTGCCTGACATGATCCAA
GTGTAGGCTGGTTGGAGGGTAGGGAGGGGAAGACGGAGCGGAGGGAGGTG
TATAGGACAGGCAGTGACGTCATTGCTCCGCCGACGAGTTGGGCGGGCTG
GACGCCTGTACTGAGGCGCAGCTCTGATTCCTTTCCCTTCCTCCCTTTTC
CCGCCCCTTCGTTCTCAGGAAAGACATCGACTGCTCCCTGGAGGAGTGGA
GCGGGCTCGGTGCTTGCACTCAGGTGTTCTGTGAGGTGCAAAAGACAGGC
ATTAGGCAGAGCGACAGGGTGAGAAGGGGAGAAGAAGGGGAGGGTGGGGC
TGGGCAGAGGGAGGACCAGGACTGAGATACCATGAGGGAGGAGGAGGGCG
ACATGCCGTGCATATTCTCATGCGGGTGCAGACCACCGATCCTTTCAACC
CCTCCCCCCCTTCATCTCTCCTCCCCTACATCATGTCCATCCCCTACACC
ATCTCTGCCGTCCTCTCTCCCTTTCTGGGCTTGGCCGTCGATCGCTTCGG
TCGGCGTGCTGTGGTGATCGCTCTGGCGCCCGTGGTGCTTATTGGCGTGC
ATCTTTCGCTGGGTAGGTAGGGAGGGAGGAAGGGAAGGGGAGGGAGGGAG
GAAGGAAGCGGGATGAAGGCCCATGTTGTGGTACCGGCACGCTGCCAACC
ATCGTATTAAAAGGCCTGCCTCTCGATGAGGAGAGGAGCAGGCGAGGAAG
GAAGGAAGGAGGGAGGGAGGGATGGGGGAAAACGGTGATAACTAGAAAGC
ACACACCTCACCGCTTGCAGACATTCCTACACCCGTGTACACATCTCACA
TACACATGTATCATATGTATCTTACCTACATGTATCGCACATTTCACACA
TATACCCGGCATCTCACATGTACGTAGCATATCTCACACTTATACTATAT
TAATGTCTTCCACACACATATTACATCTGGCACTCGTACATAATAAAGCA
TACTGGCGTTGGCTTCCTCCGTCGGTGCCTCTCGTCGGACAAGGCCTAGC
TTACAGGTAAGCGACCTCTCTGCCGCGTTTCCCTTTGCTGCTCTACGTAT
TTCCAACACTCTTCTCTCTTCCCCTACTCCCCTCCCTCAGCGCCTTCGCG
GCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAGGATCGGGTCGG
GGTGGCGTATGGCCTCACCACCGCCATTCAAAATGGAGGCCTGGCCCTTT
TTCCTCTCTTGGCGGCGGCTATCTACAAGGTAGGAGGAATGGGGAAGGAG
TAAGGGTGGGAATGCCGACGGGGATTAGGGATAAACGCACTGCTGTAATT
TGCTAAGTTTGCTTTCTCCCACTCTTTTCCCGCTTTTTAACTTCCAATCA
TCCCTCCCTTTTTCGCTCAGGCCGCCGATTCTCGCTACCTTCTTCATGTG
GAGCTTTTGTTTGTGTGCTTGGCTATAGTGGGCGTCTTCTGTGGTCTACT
ACTCAACTTCCTGGATGCACGGTACGTACCAAGGGAGGGGATGGAAAGAG
TGGAGGAACAGGTAGATCCAACCGACCTTTGGCTGTGTCCCGAGCACCTT
GTGAGGACTTTTATTCCTTCTTCTTCCTTTGCCCCTTTCATCCCTCACCT
CCTTTCTTCTACCGCAGCGCCTGTCACATCCTGAACCGACCCCAGCCCGC
TGGAGGAGGAGGAGGGCGGGGCGGGGAAGAAAGACCTGGAGCGAAGAGCA
ACAAGAAAAGGGAGGCATTGCTCCATGAGGTAGTGGAAGGAGTGAAGGTG
CCGATATCTTCTTCTTCTTCCCCCATCTACGTGTAGGATAGCTTGAATCT
GACTTCTGTTAAAGGAAAGGGCTCTTATGTATGTAAAACCCAGCCATGCA
TGACAAAACTGTGAGTGTAAGGTAAAGACATGGATAATAGCAGACGAGGG
CAACAGCGTGAGCGCAGGACCAAAGGGACGGAAGAAGCGCATGAGGATGG
AGGAACCGGTTGTGACTTGTCCTTCACATTGACATATCACAAAACACAAG
GCAGAGGAGCAACGAGAACAAAGAGAGAGAGGTATTACGATTTAACTTTT
ATTTCCTCCTAAGCAATAGCAATGTAGTCATGTACCTGTACATTCAGACG
GGATAGACGGGTGCAGTGAACTGGGTGGCCAGGCCTCTTCACCAAAGTAC
TAACAGTACACAAGTAGCATTGAATCCCTTGCCTCCCTCCACTTCTCCAT
CTCTTCCTCTTGCAATTATCACTTTCCCATAACCTTCTTTACTGGTAGTA
TTTGGTTCCTTTCGGTCAATTAATAGTGGTTTTGCTCGGGGGCGTCACGC
CATAGCAGATAAGAGCTGACATGAGCAGCCACTCTTCCTCTTGCTTGAGC
TCTTGCGAATAATGAACAAGAAAATTCCCCTTGCTTTTCCTCGCCCTTGA
GGACACCCTCCCTCCCATTGCGCGCTGCTTCAGCAACTCAGCGATTTGAG
CCAGCCGGAAACTACCACGACATGTCCAGTTCTTGAGTTTGTCCTCCGAA
TATGCTTTGCTCTGGTCCACGGCGCCGCCCCCAGAGACCACCTCCGTCCC
AGAGACGGAGGGAGGCAGGGAGGTAAGGGCGGAAGGGACGGAGGAGTGGA
CGTGGAGATGCCTCGGGTGGTGACATCGACACGAATTCTGACGGCATTAG
CCCTGCGGATATGGCAGCGCAAGATCGGCCGGGTAGGGTTAACGCCGGGG
GAGGAGGAGGGGAATTAGAAAAGTGGGCGAATCTCATGCAGGATGATTTC
AAGGCGATGTGTATGTGTGGAAGTGGGAAGATTTATTGTTATACCTGGCC
ACATCCACCTCTTCCTTTTGAGTGGCATGATGGTTTGATAGCGGTGAGCA
CTACTATCACCATCATCAGTGGCAGAGCATCACCACCCCAGGCGGCAGCT
AGGCAGCAGGAGCAGCGGCAGTTTCACGACATATATTCTTTGGCGTTCCT
TGACAGTGTCTCTCTAAGGTTTCGATCAGAGGAATACCATAATATGTTAA
ATGATGGAGAAAAGGCC
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Coding sequence (CDS) from alignment at chr14:2645..6061-

>NO14G00020.3 ID=NO14G00020.3|Name=NO14G00020.3|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr14:2645..6061- (Nannochloropsis oceanica)
ATGCGGGTGCAGACCACCGATCCTTTCAACCCCTCCCCCCCTTCATCTCT
CCTCCCCTACATCATGTCCATCCCCTACACCATCTCTGCCGTCCTCTCTC
CCTTTCTGGGCTTGGCCGTCGATCGCTTCGGTCGGCGTGCTGTGGTGATC
GCTCTGGCGCCCGTGGTGCTTATTGGCGTGCATCTTTCGCTGGCATACTG
GCGTTGGCTTCCTCCGTCGGTGCCTCTCGTCGGACAAGGCCTAGCTTACA
GCGCCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAG
GATCGGGTCGGGGTGGCGTATGGCCTCACCACCGCCATTCAAAATGGAGG
CCTGGCCCTTTTTCCTCTCTTGGCGGCGGCTATCTACAAGGCCGCCGATT
CTCGCTACCTTCTTCATGTGGAGCTTTTGTTTGTGTGCTTGGCTATAGTG
GGCGTCTTCTGTGGTCTACTACTCAACTTCCTGGATGCACGGTACGTACC
AAGGGAGGGGATGGAAAGAGTGGAGGAACAGGTAGATCCAACCGACCTTT
GGCTGTGTCCCGAGCACCTTGTGAGGACTTTTATTCCTTCTTCTTCCTTT
GCCCCTTTCATCCCTCACCTCCTTTCTTCTACCGCAGCGCCTGTCACATC
CTGA
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Synonyms
Publications