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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:1031713..1035563 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03450.4 vs.
Match: EWM20648.1 (beta- -mannosyl-glycoprotein beta- -n-acetylglucosaminyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 553.5 bits (1425), Expect = 5.100e-154 Identity = 256/378 (67.72%), Postives = 302/378 (79.89%), Query Frame = 0
Query: 2 FPWTDALATLSNKNATLSSIQSLLDTLITSLIQEPINPPVEACEIPLLMQAKNIDCSKYPTAFTKTMSRQTPVKVAHLVQLGFDADMLELLLRELNDVVDKFFIIESTRTHNKGIRKILLWDHVKNQPRFEFVKEKVVHMVLDDTEAFLDSNEEFAIEKSQERTRWESFLRWNNHTQFFGPNDLVGFGDVDEIPSRENVQLLRHCELAGPSVDIGSWFAPTRLSEAFRPDWPVPGNRWTLGDPTYWTVASATMFGQDGAQYPSRMRGTSGKFLLGGIHMTDNGYAPFRMAKLIACTECKDSAARLMTDMATIFRDNQTKEETLARLDTYLNPVWPDRKRFVGGEEMIIRLGAAYYIPWFLQCNPERFSSWYGNLDSRL 380
FPW DA+A L++ T Q LLD L TSL+QEPI P +C P LMQA +I CSKYP AFT R+ PVKVAHL+Q+GFDADMLE+LL EL+DVVDKFF+IESTRTHNK RKIL+WD +K QPRF+FVK+KVVH+VLDD+E ++ FA E QE+ RW+SFL WN H+++FGP DLVGFGD DEIP+R NVQLLRHC +AG SVDIGSWFAPTRL EAFRPDWPVPG+ WTLGDPTYWTVASAT +G G QYPSRMRG SGKFLLGGIHMTDNGY P RMAKL+ACTEC D A RL+ DMA+ F+D +E L++LD YLNPVWPDRKRFV G+ + +GAAY+IPWFL+CNP+R++SWY +DSR+
Sbjct: 94 FPWADAVAALNDTAKTSHYTQLLLDQLSTSLLQEPIVAPRPSCHPPPLMQAADIQCSKYPHAFTPKERREKPVKVAHLIQMGFDADMLEVLLHELDDVVDKFFVIESTRTHNKDTRKILMWDRLKYQPRFDFVKDKVVHLVLDDSETLVNPEVPFARESLQEKARWDSFLSWNKHSKYFGPEDLVGFGDTDEIPARSNVQLLRHCTMAGASVDIGSWFAPTRLDEAFRPDWPVPGHPWTLGDPTYWTVASATEYGNAGNQYPSRMRGMSGKFLLGGIHMTDNGYFPMRMAKLVACTECSDRAVRLIQDMASYFQDGNAGKEVLSQLDLYLNPVWPDRKRFVEGDMIKPTVGAAYHIPWFLKCNPDRYASWYRKIDSRV 471
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03450.4 ID=NO13G03450.4|Name=NO13G03450.4|organism=Nannochloropsis oceanica|type=mRNA|length=3553bp TGTTAATAAATGCCCCTACCCTTGCACTCTGCCGGGAGTAACTACTCCTA GCCATTCAATCGTTTTATTGACATCTCGGATGCCTTTCTTGTTGTGGTAG ATTGCTGGCCAGTTCAGGATAGCACAAATTTTATAAAGTTTTTATCAAAC TTATCTAGAACTCAGACCCAATAAAGGCTAGTTCAGAAGTGAGCTCGAAT TTTGCGTGTTAATAAATGCCCCTACCCTTGCACTCTGCCGGGAGTAACTA CTCCTAGCCATTCAATCGTTTTATTGACATCTCGGATGCCTTTCTTGTTG TGGTAGATTGCTGGCCAGTTCAGGATAGCACAAATTTTATAAAGTTTTTA TCAAACTTATCTAGAACTCAGACCCAATAAAGGCTAGTTCAGAAGTGAGC TCGAATTTTGCGATTCTAAACAGTGTTTGATACGAGCAGGCTCAGTCTCA CTCTCTATACACGCACCGCTCCTTCCTGTGACAGATGGATGCATTCCTCT CTCACTACCAAGCCAACAGATGAGGGTTTAAAAGAACTTAACCTAAGATT TTACCACTGCTACTGAAGGAATTGCTGGGAATAATCCATTTCAAATGCCA CATAACATGTTTGACACAGTGTCATTGGATGAAAACAGCGAGTAGCATTG ATTTTTTAATTCTCAAAAAACTTCATGTTCGAGCCATACCAAGATAATCT ATAGATGAACATTTAGACCCGCTTTGCTATAAAAATAATCTGAGTCTCAA GTGACTCATATCTTATGTAAAATTATATCACAGGCCCAGAAGATGGTCGA GATATCAAGAAACATTTCCCTTCTCTCTGGAGGGATCCTTCTTTCCTTGT TGGTAGCTCGCTTCATTATTCTTGAGGATGCAAATTTGCGACCAACAAGC TTTGCAGCAAGCAAACAAGGTATTTACTTTGTGAAGGGCCCAATGAGAAA GAACATTGTCTAATGTATTTAATATATTGCTTTCCCAGAGTTGCCCCTAC AGTTCTACATCGATCAGGAAAAAGATGAATCCATTGGAGTGGAACTCTCG AACGATAAGCCGGCGGCTATTGATCAAAATTCATTTCTCGAAAGTATGGG TAAGAGTTGTAGCTTGTAAGAAGCTAATGATCTGATGCAGCTCCAGCCGA TAATTGGACTTCACACAAATTCTCACACAAGTTTTGCACGAACGCGCATG TACTGAAGCCATGTTTCCTTGGACAGATGCACTGGCAACCTTATCAAATA AGAATGCGACGCTTTCCTCAATTCAGTCGTTACTTGACACGTTGATAACG AGTCTAATTCAGGAACCAATAAACCCCCCCGTCGAGGCATGTGAGATACC CCTTCTGATGCAGGCAAAAAATATTGATTGCTCTAAATACCCGACCGCCT TCACCAAGACCATGTCACGACAGACACCTGTCAAAGTGGCCCACCTCGTA CAGCTCGGTTTCGATGCGGACATGCTAGAGCTGTTGCTGAGAGAGCTAAA CGACGTTGTGGACAAATTTTTCATCATCGAATCCACGCGAACACATAACA AGGGAATCCGAAAGATTCTTCTGTGGGATCATGTCAAGAACCAACCAAGA TTTGAGTTTGTCAAGGAGAAGGTGGTACATATGGTGTTAGATGACACGGA GGCCTTCTTAGACTCCAATGAAGAATTTGCCATTGAGAAGTCACAGGAGA GGACACGTTGGGAATCATTTTTGCGCTGGAACAACCATACACAATTCTTT GGACCAAATGACCTGGTAGGGTTTGGAGATGTCGACGAGATCCCGTCCCG AGAAAATGTGCAGCTGCTTCGCCACTGCGAATTGGCCGGCCCGTCGGTTG ACATTGGTTCATGGTTTGCACCCACAAGGCTAAGCGAAGCGTTTCGACCC GATTGGCCAGTACCGGGCAACCGTTGGACGCTGGGCGATCCAACTTATTG GACAGTGGCCTCTGCAACCATGTTCGGACAAGATGGTGCACAATATCCAA GCCGCATGAGGGGTACATCGGGAAAATTTTTGCTAGGAGGCATTCATATG ACAGACAATGGGTATGCGCCATTTCGCATGGCAAAACTTATCGCCTGCAC GGAATGCAAGGACAGTGCAGCCAGACTTATGACAGATATGGCGACCATTT TCAGAGACAACCAAACCAAAGAGGAAACGTTAGCGAGACTAGACACGTAT TTGAACCCTGTGTGGCCTGACCGCAAACGATTTGTTGGCGGAGAGGAAAT GATAATAAGGCTCGGAGCGGCCTACTACATACCATGGTTCTTGCAATGCA ACCCAGAGAGGTTTTCCTCTTGGTACGGTAATCTCGACAGCCGTCTTCAT GGGAGTTGAATTTATCGTGGAGAGCAAAAAACGAATAAATTTATGCACAT CATTCTGACTACAGAAAAATCAGCACCAAAAGTACATCTCTCCCAAAATT ACATCGCTTTAAGACTGGCCCCTGAAGATATACTCGATATTACCGGTTTT CTCTATCATGTTACCTCACAGTTATTGGCCATCCAGAATTCTAAAACATT GTTTTACAGCCTCCCACAGTCGATTCTTTCGTAGATCCCCCTCTGGTGGT TACCGTCGAGCGCCCAGTCGGGCTGTGCTTCAGAGGTTACAGGACTTAAT ATATATATATGTTTCTCCGCGGGTATCGCACCCATTCTCGAAATTTATGG TGTACAATTTTCGAGAATCTGACTGGACATCTGACTCTTGGCTTGATTGT GTGTGAGAAGAGATCATCCGGAAGCTGCTACTTATCATCATCGTCGGATT ACATGGTCGAGGTTCGGCCTCTGAGCGGCCATTATGTGACACTAAGTCTA AGCTATTTAGAAGAGTCACTTGTCTGTCTTCGATTGAATTTCTGCTGACA GGGCTTCGCATTTTTCGGTACTGAGCGTGGAACTACAAGCGTCAGTTGTC TGGTGCGGGGTCACGTACTCATGGGGCGTCTCAGGATAGCATTGGTTTGT ACACAATCCACATCATCAAATGCTGTATGACTTTGATGCAACGCTGCATT TTTCTGATTCTCCCGCAGATCTTTCTGCCAAGATTCTCTTGTGCAAAGCA TATTCGGAGGACAAGCCCAAGAACTGTACATGTCGCGAGGAGGAGCGAGG GGAATTTCCTTGTTTATTATGCGCAAGAGCACAAGCAAGAGGAAGAGTGG CTCTTCAAGTCAGCTCTTATCTGCTATCGGGAGGGAGAAGATATGCCTAA GATGTGGAAGAAGTGCAGTGATTGCAATGATATTCCATGCCGTGATAAGC TTGCCAATGAGTCAGGCAGGGTAGAGAACGTCCTTTTGAGGATTGAAAGG AGGGATAAGGATGATCAGGGCCAGGAAAGATATAGATTGACGGAGAAGAA GAAGGCTGCATAGGCACCGTTCATAGATGTAGAAAGATTTGTTGAGGGTG AAAGACGCAATGATAAATACTTTTTGGCGTCATTTTGGTAATTTTTGCTT TCAGCTTCAGGGGGGTGAGGAGGTTAGAAAACCCATCAAAAACTAAAAAC GTG back to topprotein sequence of NO13G03450.4 >NO13G03450.4-protein ID=NO13G03450.4-protein|Name=NO13G03450.4|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp MFPWTDALATLSNKNATLSSIQSLLDTLITSLIQEPINPPVEACEIPLLM QAKNIDCSKYPTAFTKTMSRQTPVKVAHLVQLGFDADMLELLLRELNDVV DKFFIIESTRTHNKGIRKILLWDHVKNQPRFEFVKEKVVHMVLDDTEAFL DSNEEFAIEKSQERTRWESFLRWNNHTQFFGPNDLVGFGDVDEIPSRENV QLLRHCELAGPSVDIGSWFAPTRLSEAFRPDWPVPGNRWTLGDPTYWTVA SATMFGQDGAQYPSRMRGTSGKFLLGGIHMTDNGYAPFRMAKLIACTECK DSAARLMTDMATIFRDNQTKEETLARLDTYLNPVWPDRKRFVGGEEMIIR LGAAYYIPWFLQCNPERFSSWYGNLDSRLHGS* back to topmRNA from alignment at chr13:1031713..1035563- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03450.4 ID=NO13G03450.4|Name=NO13G03450.4|organism=Nannochloropsis oceanica|type=mRNA|length=3851bp|location=Sequence derived from alignment at chr13:1031713..1035563- (Nannochloropsis oceanica) TGTTAATAAATGCCCCTACCCTTGCACTCTGCCGGGAGTAACTACTCCTA
GCCATTCAATCGTTTTATTGACATCTCGGATGCCTTTCTTGTTGTGGTAG
ATTGCTGGCCAGTTCAGGATAGCACAAATTTTATAAAGTTTTTATCAAAC
TTATCTAGAACTCAGACCCAATAAAGGCTAGTTCAGAAGTGAGCTCGAAT
TTTGCGTGTTAATAAATGCCCCTACCCTTGCACTCTGCCGGGAGTAACTA
CTCCTAGCCATTCAATCGTTTTATTGACATCTCGGATGCCTTTCTTGTTG
TGGTAGATTGCTGGCCAGTTCAGGATAGCACAAATTTTATAAAGTTTTTA
TCAAACTTATCTAGAACTCAGACCCAATAAAGGCTAGTTCAGAAGTGAGC
TCGAATTTTGCGATTCTAAACAGTGTTTGATACGAGCAGGCTCAGTCTCA
CTCTCTATACACGCACCGCTCCTTCCTGTGACAGATGGATGCATTCCTCT
CTCACTACCAAGCCAACAGATGAGGGTTTAAAAGAACTTAACCTAAGATT
TTACCACTGCTACTGAAGGAATTGCTGGGAATAATCCATTTCAAATGCCA
CATAACATGTTTGACACAGTGTCATTGGATGAAAACAGCGAGTAGCATTG
ATTTTTTAATTCTCAAAAAACTTCATGTTCGAGCCATACCAAGATAATCT
ATAGATGAACATTTAGACCCGCTTTGCTATAAAAATAATCTGAGTCTCAA
GTGACTCATATCTTATGTAAAATTATATCACAGGCCCAGAAGATGGTCGA
GATATCAAGAAACATTTCCCTTCTCTCTGGAGGGATCCTTCTTTCCTTGT
TGGTAGCTCGCTTCATTATTCTTGAGGATGCAAATTTGCGACCAACAAGC
TTTGCAGCAAGCAAACAAGGTATTTACTTTGTGAAGGGCCCAATGAGAAA
GAACATTGTCTAATGTATTTAATATATTGCTTTCCCAGAGTTGCCCCTAC
AGTTCTACATCGATCAGGAAAAAGATGAATCCATTGGAGTGGAACTCTCG
AACGATAAGCCGGCGGCTATTGATCAAAATTCATTTCTCGAAAGTATGGG
TAAGAGTTGTAGCTTGTAAGAAGCTAATGATCTGATGCAGCTCCAGCCGA
TAATTGGACTTCACACAAATTCTCACACAAGTTTTGCACGAACGCGCATG
TACTGAAGCCATGTTTCCTTGGACAGATGCACTGGCAACCTTATCAAATA
AGAATGCGACGCTTTCCTCAATTCAGTCGTTACTTGACACGTTGATAACG
AGTCTAATTCAGGAACCAATAAACCCCCCCGTCGAGGCATGTGAGATACC
CCTTCTGATGCAGGCAAAAAATATTGATTGCTCTAAATACCCGACCGCCT
TCACCAAGACCATGTCACGACAGGTATGTGTATTTGAGATATCCTGTCTG
GCTGTTTGTCGGAAAGTGGCTCACTAATACCCCCTTCGCATAAACTCCTC
CACAGACACCTGTCAAAGTGGCCCACCTCGTACAGGTAAAAGACCACCAG
TTTTTGTCCGTGTATACCGAAGTTATGTTTACTACACTGTAAATGTCAGA
GACTTCTGGGTTTTACTTCCCTACAACTGCTCTATTTATGCACTCACAGC
TCGGTTTCGATGCGGACATGCTAGAGCTGTTGCTGAGAGAGCTAAACGAC
GTTGTGGACAAATTTTTCATCATCGAATCCACGCGAACACATAACAAGGT
GTGTATACTTCTTGACCCACACATTGCATTATCTCCTACGTATCAGTACA
AATATTTATAGATACCACCCCTGTTCTGCATTTTTTACATCTAATTTAAG
GGAATCCGAAAGATTCTTCTGTGGGATCATGTCAAGAACCAACCAAGATT
TGAGTTTGTCAAGGAGAAGGTGGTACATATGGTGTTAGATGACACGGAGG
CCTTCTTAGACTCCAATGAAGAATTTGCCATTGAGAAGTCACAGGAGAGG
ACACGTTGGGAATCATTTTTGCGCTGGAACAACCATACACAATTCTTTGG
ACCAAATGACCTGGTAGGGTTTGGAGATGTCGACGAGATCCCGTCCCGAG
AAAATGTGCAGCTGCTTCGCCACTGCGAATTGGCCGGCCCGTCGGTTGAC
ATTGGTTCATGGTTTGCACCCACAAGGCTAAGCGAAGCGTTTCGACCCGA
TTGGCCAGTACCGGGCAACCGTTGGACGCTGGGCGATCCAACTTATTGGA
CAGTGGCCTCTGCAACCATGTTCGGACAAGATGGTGCACAATATCCAAGC
CGCATGAGGGGTACATCGGGAAAATTTTTGCTAGGAGGCATTCATATGAC
AGACAATGGGTATGCGCCATTTCGCATGGCAAAACTTATCGCCTGCACGG
AATGCAAGGACAGTGCAGCCAGACTTATGACAGATATGGCGACCATTTTC
AGAGACAACCAAACCAAAGAGGAAACGTTAGCGAGACTAGACACGTATTT
GAACCCTGTGTGGCCTGACCGCAAACGATTTGTTGGCGGAGAGGAAATGA
TAATAAGGCTCGGAGCGGCCTACTACATACCATGGTTCTTGCAATGCAAC
CCAGAGAGGTTTTCCTCTTGGTACGGTAATCTCGACAGCCGTCTTCATGG
GAGTTGAATTTATCGTGGAGAGCAAAAAACGAATAAATTTATGCACATCA
TTCTGACTACAGAAAAATCAGCACCAAAAGTACATCTCTCCCAAAATTAC
ATCGCTTTAAGACTGGCCCCTGAAGATATACTCGATATTACCGGTTTTCT
CTATCATGTTACCTCACAGTTATTGGCCATCCAGAATTCTAAAACATTGT
TTTACAGCCTCCCACAGTCGATTCTTTCGTAGATCCCCCTCTGGTGGTTA
CCGTCGAGCGCCCAGTCGGGCTGTGCTTCAGAGGTTACAGGACTTAATAT
ATATATATGTTTCTCCGCGGGTATCGCACCCATTCTCGAAATTTATGGTG
TACAATTTTCGAGAATCTGACTGGACATCTGACTCTTGGCTTGATTGTGT
GTGAGAAGAGATCATCCGGAAGCTGCTACTTATCATCATCGTCGGATTAC
ATGGTCGAGGTTCGGCCTCTGAGCGGCCATTATGTGACACTAAGTCTAAG
CTATTTAGAAGAGTCACTTGTCTGTCTTCGATTGAATTTCTGCTGACAGG
GCTTCGCATTTTTCGGTACTGAGCGTGGAACTACAAGCGTCAGTTGTCTG
GTGCGGGGTCACGTACTCATGGGGCGTCTCAGGATAGCATTGGTTTGTAC
ACAATCCACATCATCAAATGCTGTATGACTTTGATGCAACGCTGCATTTT
TCTGATTCTCCCGCAGATCTTTCTGCCAAGATTCTCTTGTGCAAAGCATA
TTCGGAGGACAAGCCCAAGAACTGTACATGTCGCGAGGAGGAGCGAGGGG
AATTTCCTTGTTTATTATGCGCAAGAGCACAAGCAAGAGGAAGAGTGGCT
CTTCAAGTCAGCTCTTATCTGCTATCGGGAGGGAGAAGATATGCCTAAGA
TGTGGAAGAAGTGCAGTGATTGCAATGATATTCCATGCCGTGATAAGCTT
GCCAATGAGTCAGGCAGGGTAGAGAACGTCCTTTTGAGGATTGAAAGGAG
GGATAAGGATGATCAGGGCCAGGAAAGATATAGATTGACGGAGAAGAAGA
AGGCTGCATAGGCACCGTTCATAGATGTAGAAAGATTTGTTGAGGGTGAA
AGACGCAATGATAAATACTTTTTGGCGTCATTTTGGTAATTTTTGCTTTC
AGCTTCAGGGGGGTGAGGAGGTTAGAAAACCCATCAAAAACTAAAAACGT
G back to topCoding sequence (CDS) from alignment at chr13:1031713..1035563- >NO13G03450.4 ID=NO13G03450.4|Name=NO13G03450.4|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr13:1031713..1035563- (Nannochloropsis oceanica) ATGTTTCCTTGGACAGATGCACTGGCAACCTTATCAAATAAGAATGCGAC GCTTTCCTCAATTCAGTCGTTACTTGACACGTTGATAACGAGTCTAATTC AGGAACCAATAAACCCCCCCGTCGAGGCATGTGAGATACCCCTTCTGATG CAGGCAAAAAATATTGATTGCTCTAAATACCCGACCGCCTTCACCAAGAC CATGTCACGACAGACACCTGTCAAAGTGGCCCACCTCGTACAGCTCGGTT TCGATGCGGACATGCTAGAGCTGTTGCTGAGAGAGCTAAACGACGTTGTG GACAAATTTTTCATCATCGAATCCACGCGAACACATAACAAGGGAATCCG AAAGATTCTTCTGTGGGATCATGTCAAGAACCAACCAAGATTTGAGTTTG TCAAGGAGAAGGTGGTACATATGGTGTTAGATGACACGGAGGCCTTCTTA GACTCCAATGAAGAATTTGCCATTGAGAAGTCACAGGAGAGGACACGTTG GGAATCATTTTTGCGCTGGAACAACCATACACAATTCTTTGGACCAAATG ACCTGGTAGGGTTTGGAGATGTCGACGAGATCCCGTCCCGAGAAAATGTG CAGCTGCTTCGCCACTGCGAATTGGCCGGCCCGTCGGTTGACATTGGTTC ATGGTTTGCACCCACAAGGCTAAGCGAAGCGTTTCGACCCGATTGGCCAG TACCGGGCAACCGTTGGACGCTGGGCGATCCAACTTATTGGACAGTGGCC TCTGCAACCATGTTCGGACAAGATGGTGCACAATATCCAAGCCGCATGAG GGGTACATCGGGAAAATTTTTGCTAGGAGGCATTCATATGACAGACAATG GGTATGCGCCATTTCGCATGGCAAAACTTATCGCCTGCACGGAATGCAAG GACAGTGCAGCCAGACTTATGACAGATATGGCGACCATTTTCAGAGACAA CCAAACCAAAGAGGAAACGTTAGCGAGACTAGACACGTATTTGAACCCTG TGTGGCCTGACCGCAAACGATTTGTTGGCGGAGAGGAAATGATAATAAGG CTCGGAGCGGCCTACTACATACCATGGTTCTTGCAATGCAACCCAGAGAG GTTTTCCTCTTGGTACGGTAATCTCGACAGCCGTCTTCATGGGAGTTGA back to top
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