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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:1031713..1034784 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03450.3 vs.
Match: EWM20648.1 (beta- -mannosyl-glycoprotein beta- -n-acetylglucosaminyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 475.3 bits (1222), Expect = 1.500e-130 Identity = 212/299 (70.90%), Postives = 250/299 (83.61%), Query Frame = 0
Query: 19 QLGFDADMLELLLRELNDVVDKFFIIESTRTHNKGIRKILLWDHVKNQPRFEFVKEKVVHMVLDDTEAFLDSNEEFAIEKSQERTRWESFLRWNNHTQFFGPNDLVGFGDVDEIPSRENVQLLRHCELAGPSVDIGSWFAPTRLSEAFRPDWPVPGNRWTLGDPTYWTVASATMFGQDGAQYPSRMRGTSGKFLLGGIHMTDNGYAPFRMAKLIACTECKDSAARLMTDMATIFRDNQTKEETLARLDTYLNPVWPDRKRFVGGEEMIIRLGAAYYIPWFLQCNPERFSSWYGNLDSRL 318
Q+GFDADMLE+LL EL+DVVDKFF+IESTRTHNK RKIL+WD +K QPRF+FVK+KVVH+VLDD+E ++ FA E QE+ RW+SFL WN H+++FGP DLVGFGD DEIP+R NVQLLRHC +AG SVDIGSWFAPTRL EAFRPDWPVPG+ WTLGDPTYWTVASAT +G G QYPSRMRG SGKFLLGGIHMTDNGY P RMAKL+ACTEC D A RL+ DMA+ F+D +E L++LD YLNPVWPDRKRFV G+ + +GAAY+IPWFL+CNP+R++SWY +DSR+
Sbjct: 173 QMGFDADMLEVLLHELDDVVDKFFVIESTRTHNKDTRKILMWDRLKYQPRFDFVKDKVVHLVLDDSETLVNPEVPFARESLQEKARWDSFLSWNKHSKYFGPEDLVGFGDTDEIPARSNVQLLRHCTMAGASVDIGSWFAPTRLDEAFRPDWPVPGHPWTLGDPTYWTVASATEYGNAGNQYPSRMRGMSGKFLLGGIHMTDNGYFPMRMAKLVACTECSDRAVRLIQDMASYFQDGNAGKEVLSQLDLYLNPVWPDRKRFVEGDMIKPTVGAAYHIPWFLKCNPDRYASWYRKIDSRV 471
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03450.3 ID=NO13G03450.3|Name=NO13G03450.3|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp
ACAGGCCCAGAAGATGGTCGAGATATCAAGAAACATTTCCCTTCTCTCTG
GAGGGATCCTTCTTTCCTTGTTGGTAGCTCGCTTCATTATTCTTGAGGAT
GCAAATTTGCGACCAACAAGCTTTGCAGCAAGCAAACAAGAGTTGCCCCT
ACAGTTCTACATCGATCAGGAAAAAGATGAATCCATTGGAGTGGAACTCT
CGAACGATAAGCCGGCGGCTATTGATCAAAATTCATTTCTCGAAAGTATG
GGTAAGAGTTGTAGCTTGTAAGAAGCTAATGATCTGATGCAGCTCCAGCC
GATAATTGGACTTCACACAAATTCTCACACAAGTTTTGCACGAACGCGCA
TGTACTGAAGCCATGTTTCCTTGGACAGATGCACTGGCAACCTTATCAAA
TAAGAATGCGACGCTTTCCTCAATTCAGTCGTTACTTGACACGTTGATAA
CGAGTCTAATTCAGGAACCAATAAACCCCCCCGTCGAGGCATGTGAGATA
CCCCTTCTGATGCAGGCAAAAAATATTGATTGCTCTAAATACCCGACCGC
CTTCACCAAGACCATGTCACGACAGACACCTGTCAAAGTGGCCCACCTCG
TACAGGTAAAAGACCACCAGTTTTTGTCCGTGTATACCGAAGTTATGTTT
ACTACACTGTAAATGTCAGAGACTTCTGGGTTTTACTTCCCTACAACTGC
TCTATTTATGCACTCACAGCTCGGTTTCGATGCGGACATGCTAGAGCTGT
TGCTGAGAGAGCTAAACGACGTTGTGGACAAATTTTTCATCATCGAATCC
ACGCGAACACATAACAAGGGAATCCGAAAGATTCTTCTGTGGGATCATGT
CAAGAACCAACCAAGATTTGAGTTTGTCAAGGAGAAGGTGGTACATATGG
TGTTAGATGACACGGAGGCCTTCTTAGACTCCAATGAAGAATTTGCCATT
GAGAAGTCACAGGAGAGGACACGTTGGGAATCATTTTTGCGCTGGAACAA
CCATACACAATTCTTTGGACCAAATGACCTGGTAGGGTTTGGAGATGTCG
ACGAGATCCCGTCCCGAGAAAATGTGCAGCTGCTTCGCCACTGCGAATTG
GCCGGCCCGTCGGTTGACATTGGTTCATGGTTTGCACCCACAAGGCTAAG
CGAAGCGTTTCGACCCGATTGGCCAGTACCGGGCAACCGTTGGACGCTGG
GCGATCCAACTTATTGGACAGTGGCCTCTGCAACCATGTTCGGACAAGAT
GGTGCACAATATCCAAGCCGCATGAGGGGTACATCGGGAAAATTTTTGCT
AGGAGGCATTCATATGACAGACAATGGGTATGCGCCATTTCGCATGGCAA
AACTTATCGCCTGCACGGAATGCAAGGACAGTGCAGCCAGACTTATGACA
GATATGGCGACCATTTTCAGAGACAACCAAACCAAAGAGGAAACGTTAGC
GAGACTAGACACGTATTTGAACCCTGTGTGGCCTGACCGCAAACGATTTG
TTGGCGGAGAGGAAATGATAATAAGGCTCGGAGCGGCCTACTACATACCA
TGGTTCTTGCAATGCAACCCAGAGAGGTTTTCCTCTTGGTACGGTAATCT
CGACAGCCGTCTTCATGGGAGTTGAATTTATCGTGGAGAGCAAAAAACGA
ATAAATTTATGCACATCATTCTGACTACAGAAAAATCAGCACCAAAAGTA
CATCTCTCCCAAAATTACATCGCTTTAAGACTGGCCCCTGAAGATATACT
CGATATTACCGGTTTTCTCTATCATGTTACCTCACAGTTATTGGCCATCC
AGAATTCTAAAACATTGTTTTACAGCCTCCCACAGTCGATTCTTTCGTAG
ATCCCCCTCTGGTGGTTACCGTCGAGCGCCCAGTCGGGCTGTGCTTCAGA
GGTTACAGGACTTAATATATATATATGTTTCTCCGCGGGTATCGCACCCA
TTCTCGAAATTTATGGTGTACAATTTTCGAGAATCTGACTGGACATCTGA
CTCTTGGCTTGATTGTGTGTGAGAAGAGATCATCCGGAAGCTGCTACTTA
TCATCATCGTCGGATTACATGGTCGAGGTTCGGCCTCTGAGCGGCCATTA
TGTGACACTAAGTCTAAGCTATTTAGAAGAGTCACTTGTCTGTCTTCGAT
TGAATTTCTGCTGACAGGGCTTCGCATTTTTCGGTACTGAGCGTGGAACT
ACAAGCGTCAGTTGTCTGGTGCGGGGTCACGTACTCATGGGGCGTCTCAG
GATAGCATTGGTTTGTACACAATCCACATCATCAAATGCTGTATGACTTT
GATGCAACGCTGCATTTTTCTGATTCTCCCGCAGATCTTTCTGCCAAGAT
TCTCTTGTGCAAAGCATATTCGGAGGACAAGCCCAAGAACTGTACATGTC
GCGAGGAGGAGCGAGGGGAATTTCCTTGTTTATTATGCGCAAGAGCACAA
GCAAGAGGAAGAGTGGCTCTTCAAGTCAGCTCTTATCTGCTATCGGGAGG
GAGAAGATATGCCTAAGATGTGGAAGAAGTGCAGTGATTGCAATGATATT
CCATGCCGTGATAAGCTTGCCAATGAGTCAGGCAGGGTAGAGAACGTCCT
TTTGAGGATTGAAAGGAGGGATAAGGATGATCAGGGCCAGGAAAGATATA
GATTGACGGAGAAGAAGAAGGCTGCATAGGCACCGTTCATAGATGTAGAA
AGATTTGTTGAGGGTGAAAGACGCAATGATAAATACTTTTTGGCGTCATT
TTGGTAATTTTTGCTTTCAGCTTCAGGGGGGTGAGGAGGTTAGAAAACCC
ATCAAAAACTAAAAACGTG back to topprotein sequence of NO13G03450.3 >NO13G03450.3-protein ID=NO13G03450.3-protein|Name=NO13G03450.3|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MSETSGFYFPTTALFMHSQLGFDADMLELLLRELNDVVDKFFIIESTRTH
NKGIRKILLWDHVKNQPRFEFVKEKVVHMVLDDTEAFLDSNEEFAIEKSQ
ERTRWESFLRWNNHTQFFGPNDLVGFGDVDEIPSRENVQLLRHCELAGPS
VDIGSWFAPTRLSEAFRPDWPVPGNRWTLGDPTYWTVASATMFGQDGAQY
PSRMRGTSGKFLLGGIHMTDNGYAPFRMAKLIACTECKDSAARLMTDMAT
IFRDNQTKEETLARLDTYLNPVWPDRKRFVGGEEMIIRLGAAYYIPWFLQ
CNPERFSSWYGNLDSRLHGS* back to topmRNA from alignment at chr13:1031713..1034784- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03450.3 ID=NO13G03450.3|Name=NO13G03450.3|organism=Nannochloropsis oceanica|type=mRNA|length=3072bp|location=Sequence derived from alignment at chr13:1031713..1034784- (Nannochloropsis oceanica)
ACAGGCCCAGAAGATGGTCGAGATATCAAGAAACATTTCCCTTCTCTCTG
GAGGGATCCTTCTTTCCTTGTTGGTAGCTCGCTTCATTATTCTTGAGGAT
GCAAATTTGCGACCAACAAGCTTTGCAGCAAGCAAACAAGGTATTTACTT
TGTGAAGGGCCCAATGAGAAAGAACATTGTCTAATGTATTTAATATATTG
CTTTCCCAGAGTTGCCCCTACAGTTCTACATCGATCAGGAAAAAGATGAA
TCCATTGGAGTGGAACTCTCGAACGATAAGCCGGCGGCTATTGATCAAAA
TTCATTTCTCGAAAGTATGGGTAAGAGTTGTAGCTTGTAAGAAGCTAATG
ATCTGATGCAGCTCCAGCCGATAATTGGACTTCACACAAATTCTCACACA
AGTTTTGCACGAACGCGCATGTACTGAAGCCATGTTTCCTTGGACAGATG
CACTGGCAACCTTATCAAATAAGAATGCGACGCTTTCCTCAATTCAGTCG
TTACTTGACACGTTGATAACGAGTCTAATTCAGGAACCAATAAACCCCCC
CGTCGAGGCATGTGAGATACCCCTTCTGATGCAGGCAAAAAATATTGATT
GCTCTAAATACCCGACCGCCTTCACCAAGACCATGTCACGACAGGTATGT
GTATTTGAGATATCCTGTCTGGCTGTTTGTCGGAAAGTGGCTCACTAATA
CCCCCTTCGCATAAACTCCTCCACAGACACCTGTCAAAGTGGCCCACCTC
GTACAGGTAAAAGACCACCAGTTTTTGTCCGTGTATACCGAAGTTATGTT
TACTACACTGTAAATGTCAGAGACTTCTGGGTTTTACTTCCCTACAACTG
CTCTATTTATGCACTCACAGCTCGGTTTCGATGCGGACATGCTAGAGCTG
TTGCTGAGAGAGCTAAACGACGTTGTGGACAAATTTTTCATCATCGAATC
CACGCGAACACATAACAAGGTGTGTATACTTCTTGACCCACACATTGCAT
TATCTCCTACGTATCAGTACAAATATTTATAGATACCACCCCTGTTCTGC
ATTTTTTACATCTAATTTAAGGGAATCCGAAAGATTCTTCTGTGGGATCA
TGTCAAGAACCAACCAAGATTTGAGTTTGTCAAGGAGAAGGTGGTACATA
TGGTGTTAGATGACACGGAGGCCTTCTTAGACTCCAATGAAGAATTTGCC
ATTGAGAAGTCACAGGAGAGGACACGTTGGGAATCATTTTTGCGCTGGAA
CAACCATACACAATTCTTTGGACCAAATGACCTGGTAGGGTTTGGAGATG
TCGACGAGATCCCGTCCCGAGAAAATGTGCAGCTGCTTCGCCACTGCGAA
TTGGCCGGCCCGTCGGTTGACATTGGTTCATGGTTTGCACCCACAAGGCT
AAGCGAAGCGTTTCGACCCGATTGGCCAGTACCGGGCAACCGTTGGACGC
TGGGCGATCCAACTTATTGGACAGTGGCCTCTGCAACCATGTTCGGACAA
GATGGTGCACAATATCCAAGCCGCATGAGGGGTACATCGGGAAAATTTTT
GCTAGGAGGCATTCATATGACAGACAATGGGTATGCGCCATTTCGCATGG
CAAAACTTATCGCCTGCACGGAATGCAAGGACAGTGCAGCCAGACTTATG
ACAGATATGGCGACCATTTTCAGAGACAACCAAACCAAAGAGGAAACGTT
AGCGAGACTAGACACGTATTTGAACCCTGTGTGGCCTGACCGCAAACGAT
TTGTTGGCGGAGAGGAAATGATAATAAGGCTCGGAGCGGCCTACTACATA
CCATGGTTCTTGCAATGCAACCCAGAGAGGTTTTCCTCTTGGTACGGTAA
TCTCGACAGCCGTCTTCATGGGAGTTGAATTTATCGTGGAGAGCAAAAAA
CGAATAAATTTATGCACATCATTCTGACTACAGAAAAATCAGCACCAAAA
GTACATCTCTCCCAAAATTACATCGCTTTAAGACTGGCCCCTGAAGATAT
ACTCGATATTACCGGTTTTCTCTATCATGTTACCTCACAGTTATTGGCCA
TCCAGAATTCTAAAACATTGTTTTACAGCCTCCCACAGTCGATTCTTTCG
TAGATCCCCCTCTGGTGGTTACCGTCGAGCGCCCAGTCGGGCTGTGCTTC
AGAGGTTACAGGACTTAATATATATATATGTTTCTCCGCGGGTATCGCAC
CCATTCTCGAAATTTATGGTGTACAATTTTCGAGAATCTGACTGGACATC
TGACTCTTGGCTTGATTGTGTGTGAGAAGAGATCATCCGGAAGCTGCTAC
TTATCATCATCGTCGGATTACATGGTCGAGGTTCGGCCTCTGAGCGGCCA
TTATGTGACACTAAGTCTAAGCTATTTAGAAGAGTCACTTGTCTGTCTTC
GATTGAATTTCTGCTGACAGGGCTTCGCATTTTTCGGTACTGAGCGTGGA
ACTACAAGCGTCAGTTGTCTGGTGCGGGGTCACGTACTCATGGGGCGTCT
CAGGATAGCATTGGTTTGTACACAATCCACATCATCAAATGCTGTATGAC
TTTGATGCAACGCTGCATTTTTCTGATTCTCCCGCAGATCTTTCTGCCAA
GATTCTCTTGTGCAAAGCATATTCGGAGGACAAGCCCAAGAACTGTACAT
GTCGCGAGGAGGAGCGAGGGGAATTTCCTTGTTTATTATGCGCAAGAGCA
CAAGCAAGAGGAAGAGTGGCTCTTCAAGTCAGCTCTTATCTGCTATCGGG
AGGGAGAAGATATGCCTAAGATGTGGAAGAAGTGCAGTGATTGCAATGAT
ATTCCATGCCGTGATAAGCTTGCCAATGAGTCAGGCAGGGTAGAGAACGT
CCTTTTGAGGATTGAAAGGAGGGATAAGGATGATCAGGGCCAGGAAAGAT
ATAGATTGACGGAGAAGAAGAAGGCTGCATAGGCACCGTTCATAGATGTA
GAAAGATTTGTTGAGGGTGAAAGACGCAATGATAAATACTTTTTGGCGTC
ATTTTGGTAATTTTTGCTTTCAGCTTCAGGGGGGTGAGGAGGTTAGAAAA
CCCATCAAAAACTAAAAACGTG back to topCoding sequence (CDS) from alignment at chr13:1031713..1034784- >NO13G03450.3 ID=NO13G03450.3|Name=NO13G03450.3|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr13:1031713..1034784- (Nannochloropsis oceanica)
ATGTCAGAGACTTCTGGGTTTTACTTCCCTACAACTGCTCTATTTATGCA
CTCACAGCTCGGTTTCGATGCGGACATGCTAGAGCTGTTGCTGAGAGAGC
TAAACGACGTTGTGGACAAATTTTTCATCATCGAATCCACGCGAACACAT
AACAAGGGAATCCGAAAGATTCTTCTGTGGGATCATGTCAAGAACCAACC
AAGATTTGAGTTTGTCAAGGAGAAGGTGGTACATATGGTGTTAGATGACA
CGGAGGCCTTCTTAGACTCCAATGAAGAATTTGCCATTGAGAAGTCACAG
GAGAGGACACGTTGGGAATCATTTTTGCGCTGGAACAACCATACACAATT
CTTTGGACCAAATGACCTGGTAGGGTTTGGAGATGTCGACGAGATCCCGT
CCCGAGAAAATGTGCAGCTGCTTCGCCACTGCGAATTGGCCGGCCCGTCG
GTTGACATTGGTTCATGGTTTGCACCCACAAGGCTAAGCGAAGCGTTTCG
ACCCGATTGGCCAGTACCGGGCAACCGTTGGACGCTGGGCGATCCAACTT
ATTGGACAGTGGCCTCTGCAACCATGTTCGGACAAGATGGTGCACAATAT
CCAAGCCGCATGAGGGGTACATCGGGAAAATTTTTGCTAGGAGGCATTCA
TATGACAGACAATGGGTATGCGCCATTTCGCATGGCAAAACTTATCGCCT
GCACGGAATGCAAGGACAGTGCAGCCAGACTTATGACAGATATGGCGACC
ATTTTCAGAGACAACCAAACCAAAGAGGAAACGTTAGCGAGACTAGACAC
GTATTTGAACCCTGTGTGGCCTGACCGCAAACGATTTGTTGGCGGAGAGG
AAATGATAATAAGGCTCGGAGCGGCCTACTACATACCATGGTTCTTGCAA
TGCAACCCAGAGAGGTTTTCCTCTTGGTACGGTAATCTCGACAGCCGTCT
TCATGGGAGTTGA back to top
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