|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr13 | genome | chr13:1031713..1034784 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03450.2 vs.
Match: EWM20648.1 (beta- -mannosyl-glycoprotein beta- -n-acetylglucosaminyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 553.5 bits (1425), Expect = 5.100e-154 Identity = 256/378 (67.72%), Postives = 302/378 (79.89%), Query Frame = 0
Query: 2 FPWTDALATLSNKNATLSSIQSLLDTLITSLIQEPINPPVEACEIPLLMQAKNIDCSKYPTAFTKTMSRQTPVKVAHLVQLGFDADMLELLLRELNDVVDKFFIIESTRTHNKGIRKILLWDHVKNQPRFEFVKEKVVHMVLDDTEAFLDSNEEFAIEKSQERTRWESFLRWNNHTQFFGPNDLVGFGDVDEIPSRENVQLLRHCELAGPSVDIGSWFAPTRLSEAFRPDWPVPGNRWTLGDPTYWTVASATMFGQDGAQYPSRMRGTSGKFLLGGIHMTDNGYAPFRMAKLIACTECKDSAARLMTDMATIFRDNQTKEETLARLDTYLNPVWPDRKRFVGGEEMIIRLGAAYYIPWFLQCNPERFSSWYGNLDSRL 380
FPW DA+A L++ T Q LLD L TSL+QEPI P +C P LMQA +I CSKYP AFT R+ PVKVAHL+Q+GFDADMLE+LL EL+DVVDKFF+IESTRTHNK RKIL+WD +K QPRF+FVK+KVVH+VLDD+E ++ FA E QE+ RW+SFL WN H+++FGP DLVGFGD DEIP+R NVQLLRHC +AG SVDIGSWFAPTRL EAFRPDWPVPG+ WTLGDPTYWTVASAT +G G QYPSRMRG SGKFLLGGIHMTDNGY P RMAKL+ACTEC D A RL+ DMA+ F+D +E L++LD YLNPVWPDRKRFV G+ + +GAAY+IPWFL+CNP+R++SWY +DSR+
Sbjct: 94 FPWADAVAALNDTAKTSHYTQLLLDQLSTSLLQEPIVAPRPSCHPPPLMQAADIQCSKYPHAFTPKERREKPVKVAHLIQMGFDADMLEVLLHELDDVVDKFFVIESTRTHNKDTRKILMWDRLKYQPRFDFVKDKVVHLVLDDSETLVNPEVPFARESLQEKARWDSFLSWNKHSKYFGPEDLVGFGDTDEIPARSNVQLLRHCTMAGASVDIGSWFAPTRLDEAFRPDWPVPGHPWTLGDPTYWTVASATEYGNAGNQYPSRMRGMSGKFLLGGIHMTDNGYFPMRMAKLVACTECSDRAVRLIQDMASYFQDGNAGKEVLSQLDLYLNPVWPDRKRFVEGDMIKPTVGAAYHIPWFLKCNPDRYASWYRKIDSRV 471
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03450.2 ID=NO13G03450.2|Name=NO13G03450.2|organism=Nannochloropsis oceanica|type=mRNA|length=2705bp
ACAGGCCCAGAAGATGGTCGAGATATCAAGAAACATTTCCCTTCTCTCTG
GAGGGATCCTTCTTTCCTTGTTGGTAGCTCGCTTCATTATTCTTGAGGAT
GCAAATTTGCGACCAACAAGCTTTGCAGCAAGCAAACAAGAGTTGCCCCT
ACAGTTCTACATCGATCAGGAAAAAGATGAATCCATTGGAGTGGAACTCT
CGAACGATAAGCCGGCGGCTATTGATCAAAATTCATTTCTCGAAAGTATG
GGTAAGAGTTGTAGCTTGTAAGAAGCTAATGATCTGATGCAGCTCCAGCC
GATAATTGGACTTCACACAAATTCTCACACAAGTTTTGCACGAACGCGCA
TGTACTGAAGCCATGTTTCCTTGGACAGATGCACTGGCAACCTTATCAAA
TAAGAATGCGACGCTTTCCTCAATTCAGTCGTTACTTGACACGTTGATAA
CGAGTCTAATTCAGGAACCAATAAACCCCCCCGTCGAGGCATGTGAGATA
CCCCTTCTGATGCAGGCAAAAAATATTGATTGCTCTAAATACCCGACCGC
CTTCACCAAGACCATGTCACGACAGACACCTGTCAAAGTGGCCCACCTCG
TACAGCTCGGTTTCGATGCGGACATGCTAGAGCTGTTGCTGAGAGAGCTA
AACGACGTTGTGGACAAATTTTTCATCATCGAATCCACGCGAACACATAA
CAAGGGAATCCGAAAGATTCTTCTGTGGGATCATGTCAAGAACCAACCAA
GATTTGAGTTTGTCAAGGAGAAGGTGGTACATATGGTGTTAGATGACACG
GAGGCCTTCTTAGACTCCAATGAAGAATTTGCCATTGAGAAGTCACAGGA
GAGGACACGTTGGGAATCATTTTTGCGCTGGAACAACCATACACAATTCT
TTGGACCAAATGACCTGGTAGGGTTTGGAGATGTCGACGAGATCCCGTCC
CGAGAAAATGTGCAGCTGCTTCGCCACTGCGAATTGGCCGGCCCGTCGGT
TGACATTGGTTCATGGTTTGCACCCACAAGGCTAAGCGAAGCGTTTCGAC
CCGATTGGCCAGTACCGGGCAACCGTTGGACGCTGGGCGATCCAACTTAT
TGGACAGTGGCCTCTGCAACCATGTTCGGACAAGATGGTGCACAATATCC
AAGCCGCATGAGGGGTACATCGGGAAAATTTTTGCTAGGAGGCATTCATA
TGACAGACAATGGGTATGCGCCATTTCGCATGGCAAAACTTATCGCCTGC
ACGGAATGCAAGGACAGTGCAGCCAGACTTATGACAGATATGGCGACCAT
TTTCAGAGACAACCAAACCAAAGAGGAAACGTTAGCGAGACTAGACACGT
ATTTGAACCCTGTGTGGCCTGACCGCAAACGATTTGTTGGCGGAGAGGAA
ATGATAATAAGGCTCGGAGCGGCCTACTACATACCATGGTTCTTGCAATG
CAACCCAGAGAGGTTTTCCTCTTGGTACGGTAATCTCGACAGCCGTCTTC
ATGGGAGTTGAATTTATCGTGGAGAGCAAAAAACGAATAAATTTATGCAC
ATCATTCTGACTACAGAAAAATCAGCACCAAAAGTACATCTCTCCCAAAA
TTACATCGCTTTAAGACTGGCCCCTGAAGATATACTCGATATTACCGGTT
TTCTCTATCATGTTACCTCACAGTTATTGGCCATCCAGAATTCTAAAACA
TTGTTTTACAGCCTCCCACAGTCGATTCTTTCGTAGATCCCCCTCTGGTG
GTTACCGTCGAGCGCCCAGTCGGGCTGTGCTTCAGAGGTTACAGGACTTA
ATATATATATATGTTTCTCCGCGGGTATCGCACCCATTCTCGAAATTTAT
GGTGTACAATTTTCGAGAATCTGACTGGACATCTGACTCTTGGCTTGATT
GTGTGTGAGAAGAGATCATCCGGAAGCTGCTACTTATCATCATCGTCGGA
TTACATGGTCGAGGTTCGGCCTCTGAGCGGCCATTATGTGACACTAAGTC
TAAGCTATTTAGAAGAGTCACTTGTCTGTCTTCGATTGAATTTCTGCTGA
CAGGGCTTCGCATTTTTCGGTACTGAGCGTGGAACTACAAGCGTCAGTTG
TCTGGTGCGGGGTCACGTACTCATGGGGCGTCTCAGGATAGCATTGGTTT
GTACACAATCCACATCATCAAATGCTGTATGACTTTGATGCAACGCTGCA
TTTTTCTGATTCTCCCGCAGATCTTTCTGCCAAGATTCTCTTGTGCAAAG
CATATTCGGAGGACAAGCCCAAGAACTGTACATGTCGCGAGGAGGAGCGA
GGGGAATTTCCTTGTTTATTATGCGCAAGAGCACAAGCAAGAGGAAGAGT
GGCTCTTCAAGTCAGCTCTTATCTGCTATCGGGAGGGAGAAGATATGCCT
AAGATGTGGAAGAAGTGCAGTGATTGCAATGATATTCCATGCCGTGATAA
GCTTGCCAATGAGTCAGGCAGGGTAGAGAACGTCCTTTTGAGGATTGAAA
GGAGGGATAAGGATGATCAGGGCCAGGAAAGATATAGATTGACGGAGAAG
AAGAAGGCTGCATAGGCACCGTTCATAGATGTAGAAAGATTTGTTGAGGG
TGAAAGACGCAATGATAAATACTTTTTGGCGTCATTTTGGTAATTTTTGC
TTTCAGCTTCAGGGGGGTGAGGAGGTTAGAAAACCCATCAAAAACTAAAA
ACGTG back to topprotein sequence of NO13G03450.2 >NO13G03450.2-protein ID=NO13G03450.2-protein|Name=NO13G03450.2|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MFPWTDALATLSNKNATLSSIQSLLDTLITSLIQEPINPPVEACEIPLLM
QAKNIDCSKYPTAFTKTMSRQTPVKVAHLVQLGFDADMLELLLRELNDVV
DKFFIIESTRTHNKGIRKILLWDHVKNQPRFEFVKEKVVHMVLDDTEAFL
DSNEEFAIEKSQERTRWESFLRWNNHTQFFGPNDLVGFGDVDEIPSRENV
QLLRHCELAGPSVDIGSWFAPTRLSEAFRPDWPVPGNRWTLGDPTYWTVA
SATMFGQDGAQYPSRMRGTSGKFLLGGIHMTDNGYAPFRMAKLIACTECK
DSAARLMTDMATIFRDNQTKEETLARLDTYLNPVWPDRKRFVGGEEMIIR
LGAAYYIPWFLQCNPERFSSWYGNLDSRLHGS* back to topmRNA from alignment at chr13:1031713..1034784- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03450.2 ID=NO13G03450.2|Name=NO13G03450.2|organism=Nannochloropsis oceanica|type=mRNA|length=3072bp|location=Sequence derived from alignment at chr13:1031713..1034784- (Nannochloropsis oceanica)
ACAGGCCCAGAAGATGGTCGAGATATCAAGAAACATTTCCCTTCTCTCTG
GAGGGATCCTTCTTTCCTTGTTGGTAGCTCGCTTCATTATTCTTGAGGAT
GCAAATTTGCGACCAACAAGCTTTGCAGCAAGCAAACAAGGTATTTACTT
TGTGAAGGGCCCAATGAGAAAGAACATTGTCTAATGTATTTAATATATTG
CTTTCCCAGAGTTGCCCCTACAGTTCTACATCGATCAGGAAAAAGATGAA
TCCATTGGAGTGGAACTCTCGAACGATAAGCCGGCGGCTATTGATCAAAA
TTCATTTCTCGAAAGTATGGGTAAGAGTTGTAGCTTGTAAGAAGCTAATG
ATCTGATGCAGCTCCAGCCGATAATTGGACTTCACACAAATTCTCACACA
AGTTTTGCACGAACGCGCATGTACTGAAGCCATGTTTCCTTGGACAGATG
CACTGGCAACCTTATCAAATAAGAATGCGACGCTTTCCTCAATTCAGTCG
TTACTTGACACGTTGATAACGAGTCTAATTCAGGAACCAATAAACCCCCC
CGTCGAGGCATGTGAGATACCCCTTCTGATGCAGGCAAAAAATATTGATT
GCTCTAAATACCCGACCGCCTTCACCAAGACCATGTCACGACAGGTATGT
GTATTTGAGATATCCTGTCTGGCTGTTTGTCGGAAAGTGGCTCACTAATA
CCCCCTTCGCATAAACTCCTCCACAGACACCTGTCAAAGTGGCCCACCTC
GTACAGGTAAAAGACCACCAGTTTTTGTCCGTGTATACCGAAGTTATGTT
TACTACACTGTAAATGTCAGAGACTTCTGGGTTTTACTTCCCTACAACTG
CTCTATTTATGCACTCACAGCTCGGTTTCGATGCGGACATGCTAGAGCTG
TTGCTGAGAGAGCTAAACGACGTTGTGGACAAATTTTTCATCATCGAATC
CACGCGAACACATAACAAGGTGTGTATACTTCTTGACCCACACATTGCAT
TATCTCCTACGTATCAGTACAAATATTTATAGATACCACCCCTGTTCTGC
ATTTTTTACATCTAATTTAAGGGAATCCGAAAGATTCTTCTGTGGGATCA
TGTCAAGAACCAACCAAGATTTGAGTTTGTCAAGGAGAAGGTGGTACATA
TGGTGTTAGATGACACGGAGGCCTTCTTAGACTCCAATGAAGAATTTGCC
ATTGAGAAGTCACAGGAGAGGACACGTTGGGAATCATTTTTGCGCTGGAA
CAACCATACACAATTCTTTGGACCAAATGACCTGGTAGGGTTTGGAGATG
TCGACGAGATCCCGTCCCGAGAAAATGTGCAGCTGCTTCGCCACTGCGAA
TTGGCCGGCCCGTCGGTTGACATTGGTTCATGGTTTGCACCCACAAGGCT
AAGCGAAGCGTTTCGACCCGATTGGCCAGTACCGGGCAACCGTTGGACGC
TGGGCGATCCAACTTATTGGACAGTGGCCTCTGCAACCATGTTCGGACAA
GATGGTGCACAATATCCAAGCCGCATGAGGGGTACATCGGGAAAATTTTT
GCTAGGAGGCATTCATATGACAGACAATGGGTATGCGCCATTTCGCATGG
CAAAACTTATCGCCTGCACGGAATGCAAGGACAGTGCAGCCAGACTTATG
ACAGATATGGCGACCATTTTCAGAGACAACCAAACCAAAGAGGAAACGTT
AGCGAGACTAGACACGTATTTGAACCCTGTGTGGCCTGACCGCAAACGAT
TTGTTGGCGGAGAGGAAATGATAATAAGGCTCGGAGCGGCCTACTACATA
CCATGGTTCTTGCAATGCAACCCAGAGAGGTTTTCCTCTTGGTACGGTAA
TCTCGACAGCCGTCTTCATGGGAGTTGAATTTATCGTGGAGAGCAAAAAA
CGAATAAATTTATGCACATCATTCTGACTACAGAAAAATCAGCACCAAAA
GTACATCTCTCCCAAAATTACATCGCTTTAAGACTGGCCCCTGAAGATAT
ACTCGATATTACCGGTTTTCTCTATCATGTTACCTCACAGTTATTGGCCA
TCCAGAATTCTAAAACATTGTTTTACAGCCTCCCACAGTCGATTCTTTCG
TAGATCCCCCTCTGGTGGTTACCGTCGAGCGCCCAGTCGGGCTGTGCTTC
AGAGGTTACAGGACTTAATATATATATATGTTTCTCCGCGGGTATCGCAC
CCATTCTCGAAATTTATGGTGTACAATTTTCGAGAATCTGACTGGACATC
TGACTCTTGGCTTGATTGTGTGTGAGAAGAGATCATCCGGAAGCTGCTAC
TTATCATCATCGTCGGATTACATGGTCGAGGTTCGGCCTCTGAGCGGCCA
TTATGTGACACTAAGTCTAAGCTATTTAGAAGAGTCACTTGTCTGTCTTC
GATTGAATTTCTGCTGACAGGGCTTCGCATTTTTCGGTACTGAGCGTGGA
ACTACAAGCGTCAGTTGTCTGGTGCGGGGTCACGTACTCATGGGGCGTCT
CAGGATAGCATTGGTTTGTACACAATCCACATCATCAAATGCTGTATGAC
TTTGATGCAACGCTGCATTTTTCTGATTCTCCCGCAGATCTTTCTGCCAA
GATTCTCTTGTGCAAAGCATATTCGGAGGACAAGCCCAAGAACTGTACAT
GTCGCGAGGAGGAGCGAGGGGAATTTCCTTGTTTATTATGCGCAAGAGCA
CAAGCAAGAGGAAGAGTGGCTCTTCAAGTCAGCTCTTATCTGCTATCGGG
AGGGAGAAGATATGCCTAAGATGTGGAAGAAGTGCAGTGATTGCAATGAT
ATTCCATGCCGTGATAAGCTTGCCAATGAGTCAGGCAGGGTAGAGAACGT
CCTTTTGAGGATTGAAAGGAGGGATAAGGATGATCAGGGCCAGGAAAGAT
ATAGATTGACGGAGAAGAAGAAGGCTGCATAGGCACCGTTCATAGATGTA
GAAAGATTTGTTGAGGGTGAAAGACGCAATGATAAATACTTTTTGGCGTC
ATTTTGGTAATTTTTGCTTTCAGCTTCAGGGGGGTGAGGAGGTTAGAAAA
CCCATCAAAAACTAAAAACGTG back to topCoding sequence (CDS) from alignment at chr13:1031713..1034784- >NO13G03450.2 ID=NO13G03450.2|Name=NO13G03450.2|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr13:1031713..1034784- (Nannochloropsis oceanica)
ATGTTTCCTTGGACAGATGCACTGGCAACCTTATCAAATAAGAATGCGAC
GCTTTCCTCAATTCAGTCGTTACTTGACACGTTGATAACGAGTCTAATTC
AGGAACCAATAAACCCCCCCGTCGAGGCATGTGAGATACCCCTTCTGATG
CAGGCAAAAAATATTGATTGCTCTAAATACCCGACCGCCTTCACCAAGAC
CATGTCACGACAGACACCTGTCAAAGTGGCCCACCTCGTACAGCTCGGTT
TCGATGCGGACATGCTAGAGCTGTTGCTGAGAGAGCTAAACGACGTTGTG
GACAAATTTTTCATCATCGAATCCACGCGAACACATAACAAGGGAATCCG
AAAGATTCTTCTGTGGGATCATGTCAAGAACCAACCAAGATTTGAGTTTG
TCAAGGAGAAGGTGGTACATATGGTGTTAGATGACACGGAGGCCTTCTTA
GACTCCAATGAAGAATTTGCCATTGAGAAGTCACAGGAGAGGACACGTTG
GGAATCATTTTTGCGCTGGAACAACCATACACAATTCTTTGGACCAAATG
ACCTGGTAGGGTTTGGAGATGTCGACGAGATCCCGTCCCGAGAAAATGTG
CAGCTGCTTCGCCACTGCGAATTGGCCGGCCCGTCGGTTGACATTGGTTC
ATGGTTTGCACCCACAAGGCTAAGCGAAGCGTTTCGACCCGATTGGCCAG
TACCGGGCAACCGTTGGACGCTGGGCGATCCAACTTATTGGACAGTGGCC
TCTGCAACCATGTTCGGACAAGATGGTGCACAATATCCAAGCCGCATGAG
GGGTACATCGGGAAAATTTTTGCTAGGAGGCATTCATATGACAGACAATG
GGTATGCGCCATTTCGCATGGCAAAACTTATCGCCTGCACGGAATGCAAG
GACAGTGCAGCCAGACTTATGACAGATATGGCGACCATTTTCAGAGACAA
CCAAACCAAAGAGGAAACGTTAGCGAGACTAGACACGTATTTGAACCCTG
TGTGGCCTGACCGCAAACGATTTGTTGGCGGAGAGGAAATGATAATAAGG
CTCGGAGCGGCCTACTACATACCATGGTTCTTGCAATGCAACCCAGAGAG
GTTTTCCTCTTGGTACGGTAATCTCGACAGCCGTCTTCATGGGAGTTGA back to top
|