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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:956332..960252 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03270.1 vs.
Match: XP_003059323.1 (predicted protein [Micromonas pusilla CCMP1545]; EEH56455.1 predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 315.5 bits (807), Expect = 2.400e-82 Identity = 173/325 (53.23%), Postives = 218/325 (67.08%), Query Frame = 0
Query: 63 TAVCFDFDGTLGDTESPAMEVAFWEVAAYLPSLPVDDPAALQSFKQ--EFIENNAGRAFEFMVEDINKEREGKGLSTVEEAWSVLPSDPKILSLVDAARAKFQLKPLTDVLAAQSFPSIFTMQKEETNMALAVATKACDGVLDVCNLLTKEGTPFCIATTSPKPRVPISVKAASLEPFFPPEKIHSGESDFDPPRFKPAPDVYLKAAAAEKCDPEDCIAVEDSGSGVGSAANARMGLIIGYVGASHIPAGKKESHAKMLMAGEKSEDGRGALLVVEEFRNVAVLVNAFKAARAKGDGKGGKPGAFAFGEDVIQGLKGRVWLPEGK 386
TAV FDFDGTLGDTE+PAMEVAFWE+A Y P D A+ + K ++I +NAG+AFEFMV+ + ++R+ GLS++EEA + P L++VDA RAKF L PL + I T+QK+ET AL+VA CD V V L +G PFCI+TTS KPRVP+SV + +FPPEKIHSGESDFDPPRFKP P VYL AA +E DP++C+AVEDS SGVGSAANA +GLI+GYVG +HI +K SHA L AG +S+DGRGA +V+ + ++ LV F AA A+ KP F + + LKG WLPEGK
Sbjct: 52 TAVLFDFDGTLGDTETPAMEVAFWELAPYFPEAAKPDGASYLTDKTCADYIRDNAGKAFEFMVDVVEEDRKAAGLSSIEEARASAGEAPATLAVVDAGRAKFGLPPLAETRGLGK--DILTLQKDETVDALSVAAHPCDNVPGVLASLKAKGIPFCISTTSGKPRVPVSVVSCGYTEYFPPEKIHSGESDFDPPRFKPDPSVYLLAAKSEDADPKNCVAVEDSTSGVGSAANANVGLIVGYVGGTHITEDRKTSHAGTLTAGGRSDDGRGADIVIRDMVDLVPLVETF-AASAEMKDAAKKP--VVFEKATLDALKGEYWLPEGK 371
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03270.1 ID=NO13G03270.1|Name=NO13G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2605bp TCTCGGTGCTGTCTTTGAGTCTGTGTGGGTGGGTGCAGACAGGTGTGAGT TGGTGTTCGGTTCATGGGATAAGTGTGAAAGCACGAATCATAGATCGGCG GCATCCACCATTTCGACCCATGGCCAGCGCCGCTCCCTCTCGGGGCCTTC CACCTCGGTACACTCCACACGATTGTGCGTCCACGCCAAGCTGCACCCGC TCCACATGCTCATCTCAGACAGGACAATCTCGTGGTGAAGACAATGCATT TGTGGTGGGCTGCGGGCACGCATGCGATGTGACCGCTCTTTTTTCAAACG CAGCCAGCAGGCGAGCGGGGAGGAGCTTCCAATTTCTCAAAACCCCCAAC CTGTCCTTGCTCAGCATAAAATAGGCGATGAAAAACGAACGTAATCCATC GATTGGTGCAACATATTACTGTACGCCTTGGTGAAGGCTGCCTGTGTATT TGCGTGTGTGTCCCTGGTCGTAGCGTGGGGCGTGAGGTGAGCATGCACGC CACGCATTCATTTTCAAGAAAACAAGCAAAAAAAGAAGCAACGCCGACGA ACTTGAGAGAGAAACCCAGGACGGCGGGACATGCCTTGCTACTTGCTCTT TACTCTGACGGCCTCCATCGAACCACTGGCATCCTGACGTCTATTCTCTT CCTGCTGCCATCCATTTTCCGCCTCCCCTCGCTAAACCGAGACACCCCCC CCTATCCGCACGACATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGT CTGACATACTCTGCTGATGAGACAAGCCTCAACCGACTGCAACCTGGCCT CAAGGCGCATGCACACGACAATGACCGCCACCCGCACGCACTCGCACAGA TACACAGAGGGAGCGGGCAGCCCAATGGGTGCCAGCGTTGTTCTTCTTGC ATTTAACCCCCCCCCCCCAAAAAAAACATACAAAAGTCTTCCCGCACGCC GTACTAATAATGCTTAATCCCTTTGTTCCCCGCTCCCATTTTTTCTCCCC ACCGCACAGTGACAACTACCAACAAGTAGAAAGAGGGTCTCGCCTGTCCT TCTTCTTCTACTTCTGCTACCGCTGCTGCTGCTCCTCTGCTGCTGCCGCT GCTGCTGCTACCTGTTCATGTCCCTTCGTGCTTCGACCTCTTCTTCCACG ATCGCGACCTCTTTCTCCACCCTTGTTCTTGCGCTCCTCGCTTGCTTAAC GACCTCTAGCCAAGCGTTCTTTGTAACCCCGTCGTCTTTCTCCGCTACCG CACGTGTGCCACGACAACAGTACCAGCGCCCTCGCCTTCGCCTGAGCATG ACAACCGCCGTGTGCTTTGACTTCGACGGCACTTTGGGGGATACGGAATC TCCTGCCATGGAGGTGGCCTTTTGGGAGGTGGCTGCCTACTTGCCCAGCC TGCCCGTTGATGACCCTGCCGCCCTCCAGTCGTTCAAGCAGGAGTTCATC GAGAACAACGCTGGCCGAGCTTTCGAATTCATGGTCGAGGACATCAACAA GGAGCGAGAGGGCAAGGGGCTGTCGACGGTGGAGGAGGCCTGGAGCGTCC TGCCCTCGGACCCCAAGATTCTCTCTCTGGTGGACGCCGCGCGGGCCAAG TTCCAGCTGAAGCCTCTGACGGACGTGCTGGCTGCGCAGAGCTTCCCCTC CATCTTTACCATGCAGAAGGAGGAGACGAATATGGCACTGGCTGTCGCGA CGAAGGCCTGTGACGGGGTCCTGGACGTATGTAACCTCTTAACCAAAGAA GGCACTCCCTTCTGCATCGCCACCACCAGCCCCAAGCCGCGTGTGCCGAT CTCGGTCAAGGCCGCCAGCCTCGAACCCTTTTTCCCCCCGGAGAAAATCC ATTCAGGCGAGTCTGATTTCGACCCTCCTCGCTTTAAACCTGCCCCGGAC GTGTACCTCAAGGCAGCTGCTGCGGAGAAATGCGACCCGGAAGACTGCAT TGCCGTTGAAGACTCGGGCTCGGGTGTGGGGTCGGCGGCCAACGCCAGGA TGGGCTTGATTATTGGATATGTAGGCGCGAGTCATATTCCTGCGGGTAAG AAAGAGAGCCATGCCAAGATGTTAATGGCGGGGGAGAAGAGCGAGGACGG ACGGGGGGCGCTGTTGGTGGTGGAGGAGTTCCGGAACGTGGCTGTGTTGG TTAATGCCTTCAAGGCCGCTCGGGCTAAGGGAGATGGGAAGGGTGGGAAG CCCGGTGCATTTGCCTTTGGGGAGGACGTGATTCAAGGGCTGAAGGGGCG AGTGTGGCTGCCGGAGGGAAAGGTGCTCGTGAACAACTAGAAGGGGGGAT GGGTGATGTGGAGGGAGGGGGGAATGGGCATGAAGGGAGATATTTATTAG AGGAGTAAGGGTGGATGGAGAGGATGCAAGGGGAAATAGGAACATAAACG GGCGGTCGAAAAAGTCGTTTGTGTGTAAAGATTGATACATTGTTATCGAT GTTGTTGTAATGGGGGCCTGTAGTGCTTTTATTTTATTACCAGTATTGAA ATAGGGATAGGTGGGAAGGAACGGAAGGGGAAGAAGAAACCAATGGCGTT AATTTTCAAATGGAAGAAGGGCAACTTCGAAAGAAAGAAGGAAGGACTTC TCAAT back to topprotein sequence of NO13G03270.1 >NO13G03270.1-protein ID=NO13G03270.1-protein|Name=NO13G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp MSLRASTSSSTIATSFSTLVLALLACLTTSSQAFFVTPSSFSATARVPRQ QYQRPRLRLSMTTAVCFDFDGTLGDTESPAMEVAFWEVAAYLPSLPVDDP AALQSFKQEFIENNAGRAFEFMVEDINKEREGKGLSTVEEAWSVLPSDPK ILSLVDAARAKFQLKPLTDVLAAQSFPSIFTMQKEETNMALAVATKACDG VLDVCNLLTKEGTPFCIATTSPKPRVPISVKAASLEPFFPPEKIHSGESD FDPPRFKPAPDVYLKAAAAEKCDPEDCIAVEDSGSGVGSAANARMGLIIG YVGASHIPAGKKESHAKMLMAGEKSEDGRGALLVVEEFRNVAVLVNAFKA ARAKGDGKGGKPGAFAFGEDVIQGLKGRVWLPEGKVLVNN* back to topmRNA from alignment at chr13:956332..960252+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03270.1 ID=NO13G03270.1|Name=NO13G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=3921bp|location=Sequence derived from alignment at chr13:956332..960252+ (Nannochloropsis oceanica) TCTCGGTGCTGTCTTTGAGTCTGTGTGGGTGGGTGCAGACAGGTGTGAGT
TGGTGTTCGGTTCATGGGATAAGTGTGAAAGCACGAATCATAGATCGGCG
GCATCCACCATTTCGACCCATGGCCAGCGCCGCTCCCTCTCGGGGCCTTC
CACCTCGGTACACTCCACACGATTGTGCGTCCACGCCAAGCTGCACCCGC
TCCACATGCTCATCTCAGACAGGACAATCTCGTGGTGAAGACAATGCATT
TGTGGTGGGCTGCGGGCACGCATGCGATGTGACCGCTCTTTTTTCAAACG
CAGCCAGCAGGCGAGCGGGGAGGAGCTTCCAATTTCTCAAAACCCCCAAC
CTGTCCTTGCTCAGCATAAAATAGGCGATGAAAAACGAACGTAATCCATC
GATTGGTGCAACATATTACTGTACGCCTTGGTGAAGGCTGCCTGTGTATT
TGCGTGTGTGTCCCTGGTCGTAGCGTGGGGCGTGAGGTGAGCATGCACGC
CACGCATTCATTTTCAAGAAAACAAGCAAAAAAAGAAGCAACGCCGACGA
ACTTGAGAGAGAAACCCAGGACGGCGGGACATGCCTTGCTACTTGCTCTT
TACTCTGACGGCCTCCATCGAACCACTGGCATCCTGACGTCTATTCTCTT
CCTGCTGCCATCCATTTTCCGCCTCCCCTCGCTAAACCGAGACACCCCCC
CCTATCCGCACGACATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGT
CTGACATACTCTGCTGATGAGACAAGCCTCAACCGACTGCAACCTGGCCT
CAAGGCGCATGCACACGACAATGACCGCCACCCGCACGCACTCGCACAGA
TACACAGAGGGAGCGGGCAGCCCAATGGGTGCCAGCGTTGTTCTTCTTGC
ATTTAACCCCCCCCCCCCAAAAAAAACATACAAAAGTCTTCCCGCACGCC
GTACTAATAATGCTTAATCCCTTTGTTCCCCGCTCCCATTTTTTCTCCCC
ACCGCACAGTGACAACTACCAACAAGTAGAAAGAGGGTCTCGCCTGTCCT
TCTTCTTCTACTTCTGCTACCGCTGCTGCTGCTCCTCTGCTGCTGCCGCT
GCTGCTGCTACCTGTTCATGTCCCTTCGTGCTTCGACCTCTTCTTCCACG
ATCGCGACCTCTTTCTCCACCCTTGTTCTTGCGCTCCTCGCTTGCTTAAC
GACCTCTAGCCAAGCGTTCTTTGTAACCCCGTCGTCTTTCTCCGCTACCG
CACGTGTGCCACGACAACAGTACCAGCGGTAAGGGGGGAGGGCGATGAGG
GTCGACGATGGGATGAAGGTGGTGGGGGATGGCAGGACCGAATGACCCTA
TTGTTTTTCAAATTGGAGTCGCTGTCTGCTGCTTCGGCGCTTCTGGCCCG
ACAAGCGATGCGAGAGTTTGTTTGCTTATTCCCTTGCCCCCTCCTCTCTC
CTTCCTTCCCTCCCTCCCTTCAGCCCTCGCCTTCGCCTGAGCATGACAAC
CGCCGTGTGCTTTGACTTCGACGGCACTTTGGGGGATACGGAATCTCCTG
CCATGGAGGTGGCCTTTTGGGAGGTGGCTGCCTACTTGCCCAGCCTGCCC
GTTGGTAAGGAGGGAGGGAGGGAAGGGGGGAAGCAAGGAAGAGTCTTGCA
GTGGCTGCGAGTCGTCTAAACCTTCTTTTTCTTTTTCTCTTTCCTTTTTT
CTTTGGACGGACGACTTGGAGGCACCCTTGTGCTGTACAGCAGGAGGCCT
TTCTACTGATCCAATAATGGAAAGAAGCCTCTGTTATGAAGCTGTCTTAA
TCCCTCTCTCCCCCCTCCCTCCCTCGCTAGATGACCCTGCCGCCCTCCAG
TCGTTCAAGCAGGAGTTCATCGAGAACAACGCTGGCCGAGCTTTCGAATT
CATGGTCGAGGACATCAACAAGGTATAGAGGGAGGGAGAGATGGAAAGAG
GGAGTTAATTTTTTCACGGGAAGGAGCAACAGTAGTAGTAGAGGAGGGAG
GGAAGGAGGGAGGGAGGGAGGGAGGGGAGGGGGGGGTTAAATTTATGAAG
AATGTACACCCTGCTCTCTCTCCCTTCCAAGGTTTATGTAGAACATGCCA
AAAATCGCCCAATCAATCATTCATTTGTTTATTTGTCCTTTTCTTTATTC
ATTTATTCATGTGACTGAACCCTGACGCAGGAGCGAGAGGGCAAGGGGCT
GTCGACGGTGGAGGAGGCCTGGAGCGGTACGTCACAGAGAGAGGAAGGAA
GGGAGGGAGGGAGGGAGGAAGAATTAAGACGATAACAGACATGGACATGG
CATGTAGACTGATAACTAGGTTGTAGGCACGTTCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTCCCTC
GGACGCCAAGACCATTTCCCCCGTGGACGCCGCCCAGGACAATTTCTCAT
CATACTCACTCACCCCTCCCTCCCTCCCGCCCTCCCTCCCTCGCTTCCTC
AGTCCTGCCCTCGGACCCCAAGATTCTCTCTCTGGTGGACGCCGCGCGGG
CCAAGTTCCAGCTGAAGCCTCTGACGGACGTGCTGGCTGCGCAGAGCTTC
CCCTCCATCTTTACCATGCAGAAGGAGGAGACGAATATGGCACTGGCTGT
CGCGACGAAGGCCTGTGACGGGGTATGTCCTCCCTCCTTTCCTCCCTCCT
TTCCTCCCTCCTTTTCTTCCTCCCTTTTTTCCATGCCTCCCTCCTTCTCT
TCCTTCCCCACCCCAACTCCGCTGACCATTCTCCTCCCTCCCTCTCTATC
TCCCCCCCTCCCTCCCAGGTCCTGGACGTATGTAACCTCTTAACCAAAGA
AGGCACTCCCTTCTGCATCGCCACCACCAGCCCCAAGCCGCGTGTGCCGA
TCTCGGTCAAGGCCGCCAGCCTCGAACCCTTTTTCCCCCCGGAGAAAATC
CATTCAGGCGAGTCTGATTTCGACCCTCCTCGGTACGTGCCTCCCCTCTC
TCCCTCCCTCCCTCTCTCCCTTCCTCCCTTCCTCTCTCTCTACCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCACCGTCTTGGCAACTAGGAGTAGCCATATTCCTTCCGCCATCTCACCT
CTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTGGTACGTCCCCAGCTT
TAAACCTGCCCCGGACGTGTACCTCAAGGCAGCTGCTGCGGAGAAATGCG
ACCCGGAAGACTGCATTGCCGTTGAAGACTCGGGCTCGGGTGTGGGGTCG
GCGGCCAACGCCAGGATGGGCTTGATTATTGGATATGTAGGCGCGAGTCA
TATTCCTGCGGGTAAGAAAGAGAGCCATGCCAAGATGTTAATGGCGGGGG
AGAAGAGCGAGGACGGACGGGGGGCGCTGTTGGTGGTGGAGGAGTTCCGG
AACGTGGCTGTGTTGGTTAATGCCTTCAAGGCCGCTCGGGCTAAGGGAGA
TGGGAAGGGTGGGAAGCCCGGTGCATTTGCCTTTGGGGAGGACGTGATTC
AAGGGCTGAAGGGGCGAGTGTGGCTGCCGGAGGGAAAGGTGCTCGTGAAC
AACTAGAAGGGGGGATGGGTGATGTGGAGGGAGGGGGGAATGGGCATGAA
GGGAGATATTTATTAGAGGAGTAAGGGTGGATGGAGAGGATGCAAGGGGA
AATAGGAACATAAACGGGCGGTCGAAAAAGTCGTTTGTGTGTAAAGATTG
ATACATTGTTATCGATGTTGTTGTAATGGGGGCCTGTAGTGCTTTTATTT
TATTACCAGTATTGAAATAGGGATAGGTGGGAAGGAACGGAAGGGGAAGA
AGAAACCAATGGCGTTAATTTTCAAATGGAAGAAGGGCAACTTCGAAAGA
AAGAAGGAAGGACTTCTCAAT back to topCoding sequence (CDS) from alignment at chr13:956332..960252+ >NO13G03270.1 ID=NO13G03270.1|Name=NO13G03270.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr13:956332..960252+ (Nannochloropsis oceanica) ATGTCCCTTCGTGCTTCGACCTCTTCTTCCACGATCGCGACCTCTTTCTC CACCCTTGTTCTTGCGCTCCTCGCTTGCTTAACGACCTCTAGCCAAGCGT TCTTTGTAACCCCGTCGTCTTTCTCCGCTACCGCACGTGTGCCACGACAA CAGTACCAGCGCCCTCGCCTTCGCCTGAGCATGACAACCGCCGTGTGCTT TGACTTCGACGGCACTTTGGGGGATACGGAATCTCCTGCCATGGAGGTGG CCTTTTGGGAGGTGGCTGCCTACTTGCCCAGCCTGCCCGTTGATGACCCT GCCGCCCTCCAGTCGTTCAAGCAGGAGTTCATCGAGAACAACGCTGGCCG AGCTTTCGAATTCATGGTCGAGGACATCAACAAGGAGCGAGAGGGCAAGG GGCTGTCGACGGTGGAGGAGGCCTGGAGCGTCCTGCCCTCGGACCCCAAG ATTCTCTCTCTGGTGGACGCCGCGCGGGCCAAGTTCCAGCTGAAGCCTCT GACGGACGTGCTGGCTGCGCAGAGCTTCCCCTCCATCTTTACCATGCAGA AGGAGGAGACGAATATGGCACTGGCTGTCGCGACGAAGGCCTGTGACGGG GTCCTGGACGTATGTAACCTCTTAACCAAAGAAGGCACTCCCTTCTGCAT CGCCACCACCAGCCCCAAGCCGCGTGTGCCGATCTCGGTCAAGGCCGCCA GCCTCGAACCCTTTTTCCCCCCGGAGAAAATCCATTCAGGCGAGTCTGAT TTCGACCCTCCTCGCTTTAAACCTGCCCCGGACGTGTACCTCAAGGCAGC TGCTGCGGAGAAATGCGACCCGGAAGACTGCATTGCCGTTGAAGACTCGG GCTCGGGTGTGGGGTCGGCGGCCAACGCCAGGATGGGCTTGATTATTGGA TATGTAGGCGCGAGTCATATTCCTGCGGGTAAGAAAGAGAGCCATGCCAA GATGTTAATGGCGGGGGAGAAGAGCGAGGACGGACGGGGGGCGCTGTTGG TGGTGGAGGAGTTCCGGAACGTGGCTGTGTTGGTTAATGCCTTCAAGGCC GCTCGGGCTAAGGGAGATGGGAAGGGTGGGAAGCCCGGTGCATTTGCCTT TGGGGAGGACGTGATTCAAGGGCTGAAGGGGCGAGTGTGGCTGCCGGAGG GAAAGGTGCTCGTGAACAACTAG back to top
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