NO13G03270.1, NO13G03270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03270.1
Unique NameNO13G03270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2605
Alignment locationchr13:956332..960252 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:956332..960252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G03270.1 vs.
Match: XP_003059323.1 (predicted protein [Micromonas pusilla CCMP1545]; EEH56455.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 315.5 bits (807), Expect = 2.400e-82
Identity = 173/325 (53.23%), Postives = 218/325 (67.08%), Query Frame = 0
Query:   63 TAVCFDFDGTLGDTESPAMEVAFWEVAAYLPSLPVDDPAALQSFKQ--EFIENNAGRAFEFMVEDINKEREGKGLSTVEEAWSVLPSDPKILSLVDAARAKFQLKPLTDVLAAQSFPSIFTMQKEETNMALAVATKACDGVLDVCNLLTKEGTPFCIATTSPKPRVPISVKAASLEPFFPPEKIHSGESDFDPPRFKPAPDVYLKAAAAEKCDPEDCIAVEDSGSGVGSAANARMGLIIGYVGASHIPAGKKESHAKMLMAGEKSEDGRGALLVVEEFRNVAVLVNAFKAARAKGDGKGGKPGAFAFGEDVIQGLKGRVWLPEGK 386
            TAV FDFDGTLGDTE+PAMEVAFWE+A Y P     D A+  + K   ++I +NAG+AFEFMV+ + ++R+  GLS++EEA +     P  L++VDA RAKF L PL +         I T+QK+ET  AL+VA   CD V  V   L  +G PFCI+TTS KPRVP+SV +     +FPPEKIHSGESDFDPPRFKP P VYL AA +E  DP++C+AVEDS SGVGSAANA +GLI+GYVG +HI   +K SHA  L AG +S+DGRGA +V+ +  ++  LV  F AA A+      KP    F +  +  LKG  WLPEGK
Sbjct:   52 TAVLFDFDGTLGDTETPAMEVAFWELAPYFPEAAKPDGASYLTDKTCADYIRDNAGKAFEFMVDVVEEDRKAAGLSSIEEARASAGEAPATLAVVDAGRAKFGLPPLAETRGLGK--DILTLQKDETVDALSVAAHPCDNVPGVLASLKAKGIPFCISTTSGKPRVPVSVVSCGYTEYFPPEKIHSGESDFDPPRFKPDPSVYLLAAKSEDADPKNCVAVEDSTSGVGSAANANVGLIVGYVGGTHITEDRKTSHAGTLTAGGRSDDGRGADIVIRDMVDLVPLVETF-AASAEMKDAAKKP--VVFEKATLDALKGEYWLPEGK 371          
The following BLAST results are available for this feature:
BLAST of NO13G03270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_003059323.12.400e-8253.23predicted protein [Micromonas pusilla CCMP1545]; E... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03270NO13G03270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03270.1NO13G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03270.1.cds1NO13G03270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03270.1.cds2NO13G03270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03270.1.cds3NO13G03270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03270.1.cds4NO13G03270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03270.1.cds5NO13G03270.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03270.1.cds6NO13G03270.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03270.1.cds7NO13G03270.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03270.1 ID=NO13G03270.1|Name=NO13G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2605bp
TCTCGGTGCTGTCTTTGAGTCTGTGTGGGTGGGTGCAGACAGGTGTGAGT
TGGTGTTCGGTTCATGGGATAAGTGTGAAAGCACGAATCATAGATCGGCG
GCATCCACCATTTCGACCCATGGCCAGCGCCGCTCCCTCTCGGGGCCTTC
CACCTCGGTACACTCCACACGATTGTGCGTCCACGCCAAGCTGCACCCGC
TCCACATGCTCATCTCAGACAGGACAATCTCGTGGTGAAGACAATGCATT
TGTGGTGGGCTGCGGGCACGCATGCGATGTGACCGCTCTTTTTTCAAACG
CAGCCAGCAGGCGAGCGGGGAGGAGCTTCCAATTTCTCAAAACCCCCAAC
CTGTCCTTGCTCAGCATAAAATAGGCGATGAAAAACGAACGTAATCCATC
GATTGGTGCAACATATTACTGTACGCCTTGGTGAAGGCTGCCTGTGTATT
TGCGTGTGTGTCCCTGGTCGTAGCGTGGGGCGTGAGGTGAGCATGCACGC
CACGCATTCATTTTCAAGAAAACAAGCAAAAAAAGAAGCAACGCCGACGA
ACTTGAGAGAGAAACCCAGGACGGCGGGACATGCCTTGCTACTTGCTCTT
TACTCTGACGGCCTCCATCGAACCACTGGCATCCTGACGTCTATTCTCTT
CCTGCTGCCATCCATTTTCCGCCTCCCCTCGCTAAACCGAGACACCCCCC
CCTATCCGCACGACATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGT
CTGACATACTCTGCTGATGAGACAAGCCTCAACCGACTGCAACCTGGCCT
CAAGGCGCATGCACACGACAATGACCGCCACCCGCACGCACTCGCACAGA
TACACAGAGGGAGCGGGCAGCCCAATGGGTGCCAGCGTTGTTCTTCTTGC
ATTTAACCCCCCCCCCCCAAAAAAAACATACAAAAGTCTTCCCGCACGCC
GTACTAATAATGCTTAATCCCTTTGTTCCCCGCTCCCATTTTTTCTCCCC
ACCGCACAGTGACAACTACCAACAAGTAGAAAGAGGGTCTCGCCTGTCCT
TCTTCTTCTACTTCTGCTACCGCTGCTGCTGCTCCTCTGCTGCTGCCGCT
GCTGCTGCTACCTGTTCATGTCCCTTCGTGCTTCGACCTCTTCTTCCACG
ATCGCGACCTCTTTCTCCACCCTTGTTCTTGCGCTCCTCGCTTGCTTAAC
GACCTCTAGCCAAGCGTTCTTTGTAACCCCGTCGTCTTTCTCCGCTACCG
CACGTGTGCCACGACAACAGTACCAGCGCCCTCGCCTTCGCCTGAGCATG
ACAACCGCCGTGTGCTTTGACTTCGACGGCACTTTGGGGGATACGGAATC
TCCTGCCATGGAGGTGGCCTTTTGGGAGGTGGCTGCCTACTTGCCCAGCC
TGCCCGTTGATGACCCTGCCGCCCTCCAGTCGTTCAAGCAGGAGTTCATC
GAGAACAACGCTGGCCGAGCTTTCGAATTCATGGTCGAGGACATCAACAA
GGAGCGAGAGGGCAAGGGGCTGTCGACGGTGGAGGAGGCCTGGAGCGTCC
TGCCCTCGGACCCCAAGATTCTCTCTCTGGTGGACGCCGCGCGGGCCAAG
TTCCAGCTGAAGCCTCTGACGGACGTGCTGGCTGCGCAGAGCTTCCCCTC
CATCTTTACCATGCAGAAGGAGGAGACGAATATGGCACTGGCTGTCGCGA
CGAAGGCCTGTGACGGGGTCCTGGACGTATGTAACCTCTTAACCAAAGAA
GGCACTCCCTTCTGCATCGCCACCACCAGCCCCAAGCCGCGTGTGCCGAT
CTCGGTCAAGGCCGCCAGCCTCGAACCCTTTTTCCCCCCGGAGAAAATCC
ATTCAGGCGAGTCTGATTTCGACCCTCCTCGCTTTAAACCTGCCCCGGAC
GTGTACCTCAAGGCAGCTGCTGCGGAGAAATGCGACCCGGAAGACTGCAT
TGCCGTTGAAGACTCGGGCTCGGGTGTGGGGTCGGCGGCCAACGCCAGGA
TGGGCTTGATTATTGGATATGTAGGCGCGAGTCATATTCCTGCGGGTAAG
AAAGAGAGCCATGCCAAGATGTTAATGGCGGGGGAGAAGAGCGAGGACGG
ACGGGGGGCGCTGTTGGTGGTGGAGGAGTTCCGGAACGTGGCTGTGTTGG
TTAATGCCTTCAAGGCCGCTCGGGCTAAGGGAGATGGGAAGGGTGGGAAG
CCCGGTGCATTTGCCTTTGGGGAGGACGTGATTCAAGGGCTGAAGGGGCG
AGTGTGGCTGCCGGAGGGAAAGGTGCTCGTGAACAACTAGAAGGGGGGAT
GGGTGATGTGGAGGGAGGGGGGAATGGGCATGAAGGGAGATATTTATTAG
AGGAGTAAGGGTGGATGGAGAGGATGCAAGGGGAAATAGGAACATAAACG
GGCGGTCGAAAAAGTCGTTTGTGTGTAAAGATTGATACATTGTTATCGAT
GTTGTTGTAATGGGGGCCTGTAGTGCTTTTATTTTATTACCAGTATTGAA
ATAGGGATAGGTGGGAAGGAACGGAAGGGGAAGAAGAAACCAATGGCGTT
AATTTTCAAATGGAAGAAGGGCAACTTCGAAAGAAAGAAGGAAGGACTTC
TCAAT
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protein sequence of NO13G03270.1

>NO13G03270.1-protein ID=NO13G03270.1-protein|Name=NO13G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MSLRASTSSSTIATSFSTLVLALLACLTTSSQAFFVTPSSFSATARVPRQ
QYQRPRLRLSMTTAVCFDFDGTLGDTESPAMEVAFWEVAAYLPSLPVDDP
AALQSFKQEFIENNAGRAFEFMVEDINKEREGKGLSTVEEAWSVLPSDPK
ILSLVDAARAKFQLKPLTDVLAAQSFPSIFTMQKEETNMALAVATKACDG
VLDVCNLLTKEGTPFCIATTSPKPRVPISVKAASLEPFFPPEKIHSGESD
FDPPRFKPAPDVYLKAAAAEKCDPEDCIAVEDSGSGVGSAANARMGLIIG
YVGASHIPAGKKESHAKMLMAGEKSEDGRGALLVVEEFRNVAVLVNAFKA
ARAKGDGKGGKPGAFAFGEDVIQGLKGRVWLPEGKVLVNN*
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mRNA from alignment at chr13:956332..960252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03270.1 ID=NO13G03270.1|Name=NO13G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=3921bp|location=Sequence derived from alignment at chr13:956332..960252+ (Nannochloropsis oceanica)
TCTCGGTGCTGTCTTTGAGTCTGTGTGGGTGGGTGCAGACAGGTGTGAGT TGGTGTTCGGTTCATGGGATAAGTGTGAAAGCACGAATCATAGATCGGCG GCATCCACCATTTCGACCCATGGCCAGCGCCGCTCCCTCTCGGGGCCTTC CACCTCGGTACACTCCACACGATTGTGCGTCCACGCCAAGCTGCACCCGC TCCACATGCTCATCTCAGACAGGACAATCTCGTGGTGAAGACAATGCATT TGTGGTGGGCTGCGGGCACGCATGCGATGTGACCGCTCTTTTTTCAAACG CAGCCAGCAGGCGAGCGGGGAGGAGCTTCCAATTTCTCAAAACCCCCAAC CTGTCCTTGCTCAGCATAAAATAGGCGATGAAAAACGAACGTAATCCATC GATTGGTGCAACATATTACTGTACGCCTTGGTGAAGGCTGCCTGTGTATT TGCGTGTGTGTCCCTGGTCGTAGCGTGGGGCGTGAGGTGAGCATGCACGC CACGCATTCATTTTCAAGAAAACAAGCAAAAAAAGAAGCAACGCCGACGA ACTTGAGAGAGAAACCCAGGACGGCGGGACATGCCTTGCTACTTGCTCTT TACTCTGACGGCCTCCATCGAACCACTGGCATCCTGACGTCTATTCTCTT CCTGCTGCCATCCATTTTCCGCCTCCCCTCGCTAAACCGAGACACCCCCC CCTATCCGCACGACATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGT CTGACATACTCTGCTGATGAGACAAGCCTCAACCGACTGCAACCTGGCCT CAAGGCGCATGCACACGACAATGACCGCCACCCGCACGCACTCGCACAGA TACACAGAGGGAGCGGGCAGCCCAATGGGTGCCAGCGTTGTTCTTCTTGC ATTTAACCCCCCCCCCCCAAAAAAAACATACAAAAGTCTTCCCGCACGCC GTACTAATAATGCTTAATCCCTTTGTTCCCCGCTCCCATTTTTTCTCCCC ACCGCACAGTGACAACTACCAACAAGTAGAAAGAGGGTCTCGCCTGTCCT TCTTCTTCTACTTCTGCTACCGCTGCTGCTGCTCCTCTGCTGCTGCCGCT GCTGCTGCTACCTGTTCATGTCCCTTCGTGCTTCGACCTCTTCTTCCACG ATCGCGACCTCTTTCTCCACCCTTGTTCTTGCGCTCCTCGCTTGCTTAAC GACCTCTAGCCAAGCGTTCTTTGTAACCCCGTCGTCTTTCTCCGCTACCG CACGTGTGCCACGACAACAGTACCAGCGGTAAGGGGGGAGGGCGATGAGG GTCGACGATGGGATGAAGGTGGTGGGGGATGGCAGGACCGAATGACCCTA TTGTTTTTCAAATTGGAGTCGCTGTCTGCTGCTTCGGCGCTTCTGGCCCG ACAAGCGATGCGAGAGTTTGTTTGCTTATTCCCTTGCCCCCTCCTCTCTC CTTCCTTCCCTCCCTCCCTTCAGCCCTCGCCTTCGCCTGAGCATGACAAC CGCCGTGTGCTTTGACTTCGACGGCACTTTGGGGGATACGGAATCTCCTG CCATGGAGGTGGCCTTTTGGGAGGTGGCTGCCTACTTGCCCAGCCTGCCC GTTGGTAAGGAGGGAGGGAGGGAAGGGGGGAAGCAAGGAAGAGTCTTGCA GTGGCTGCGAGTCGTCTAAACCTTCTTTTTCTTTTTCTCTTTCCTTTTTT CTTTGGACGGACGACTTGGAGGCACCCTTGTGCTGTACAGCAGGAGGCCT TTCTACTGATCCAATAATGGAAAGAAGCCTCTGTTATGAAGCTGTCTTAA TCCCTCTCTCCCCCCTCCCTCCCTCGCTAGATGACCCTGCCGCCCTCCAG TCGTTCAAGCAGGAGTTCATCGAGAACAACGCTGGCCGAGCTTTCGAATT CATGGTCGAGGACATCAACAAGGTATAGAGGGAGGGAGAGATGGAAAGAG GGAGTTAATTTTTTCACGGGAAGGAGCAACAGTAGTAGTAGAGGAGGGAG GGAAGGAGGGAGGGAGGGAGGGAGGGGAGGGGGGGGTTAAATTTATGAAG AATGTACACCCTGCTCTCTCTCCCTTCCAAGGTTTATGTAGAACATGCCA AAAATCGCCCAATCAATCATTCATTTGTTTATTTGTCCTTTTCTTTATTC ATTTATTCATGTGACTGAACCCTGACGCAGGAGCGAGAGGGCAAGGGGCT GTCGACGGTGGAGGAGGCCTGGAGCGGTACGTCACAGAGAGAGGAAGGAA GGGAGGGAGGGAGGGAGGAAGAATTAAGACGATAACAGACATGGACATGG CATGTAGACTGATAACTAGGTTGTAGGCACGTTCTCCCTCCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTCCCTC GGACGCCAAGACCATTTCCCCCGTGGACGCCGCCCAGGACAATTTCTCAT CATACTCACTCACCCCTCCCTCCCTCCCGCCCTCCCTCCCTCGCTTCCTC AGTCCTGCCCTCGGACCCCAAGATTCTCTCTCTGGTGGACGCCGCGCGGG CCAAGTTCCAGCTGAAGCCTCTGACGGACGTGCTGGCTGCGCAGAGCTTC CCCTCCATCTTTACCATGCAGAAGGAGGAGACGAATATGGCACTGGCTGT CGCGACGAAGGCCTGTGACGGGGTATGTCCTCCCTCCTTTCCTCCCTCCT TTCCTCCCTCCTTTTCTTCCTCCCTTTTTTCCATGCCTCCCTCCTTCTCT TCCTTCCCCACCCCAACTCCGCTGACCATTCTCCTCCCTCCCTCTCTATC TCCCCCCCTCCCTCCCAGGTCCTGGACGTATGTAACCTCTTAACCAAAGA AGGCACTCCCTTCTGCATCGCCACCACCAGCCCCAAGCCGCGTGTGCCGA TCTCGGTCAAGGCCGCCAGCCTCGAACCCTTTTTCCCCCCGGAGAAAATC CATTCAGGCGAGTCTGATTTCGACCCTCCTCGGTACGTGCCTCCCCTCTC TCCCTCCCTCCCTCTCTCCCTTCCTCCCTTCCTCTCTCTCTACCTCCCTC CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC TCACCGTCTTGGCAACTAGGAGTAGCCATATTCCTTCCGCCATCTCACCT CTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTGGTACGTCCCCAGCTT TAAACCTGCCCCGGACGTGTACCTCAAGGCAGCTGCTGCGGAGAAATGCG ACCCGGAAGACTGCATTGCCGTTGAAGACTCGGGCTCGGGTGTGGGGTCG GCGGCCAACGCCAGGATGGGCTTGATTATTGGATATGTAGGCGCGAGTCA TATTCCTGCGGGTAAGAAAGAGAGCCATGCCAAGATGTTAATGGCGGGGG AGAAGAGCGAGGACGGACGGGGGGCGCTGTTGGTGGTGGAGGAGTTCCGG AACGTGGCTGTGTTGGTTAATGCCTTCAAGGCCGCTCGGGCTAAGGGAGA TGGGAAGGGTGGGAAGCCCGGTGCATTTGCCTTTGGGGAGGACGTGATTC AAGGGCTGAAGGGGCGAGTGTGGCTGCCGGAGGGAAAGGTGCTCGTGAAC AACTAGAAGGGGGGATGGGTGATGTGGAGGGAGGGGGGAATGGGCATGAA GGGAGATATTTATTAGAGGAGTAAGGGTGGATGGAGAGGATGCAAGGGGA AATAGGAACATAAACGGGCGGTCGAAAAAGTCGTTTGTGTGTAAAGATTG ATACATTGTTATCGATGTTGTTGTAATGGGGGCCTGTAGTGCTTTTATTT TATTACCAGTATTGAAATAGGGATAGGTGGGAAGGAACGGAAGGGGAAGA AGAAACCAATGGCGTTAATTTTCAAATGGAAGAAGGGCAACTTCGAAAGA AAGAAGGAAGGACTTCTCAAT
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Coding sequence (CDS) from alignment at chr13:956332..960252+

>NO13G03270.1 ID=NO13G03270.1|Name=NO13G03270.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr13:956332..960252+ (Nannochloropsis oceanica)
ATGTCCCTTCGTGCTTCGACCTCTTCTTCCACGATCGCGACCTCTTTCTC
CACCCTTGTTCTTGCGCTCCTCGCTTGCTTAACGACCTCTAGCCAAGCGT
TCTTTGTAACCCCGTCGTCTTTCTCCGCTACCGCACGTGTGCCACGACAA
CAGTACCAGCGCCCTCGCCTTCGCCTGAGCATGACAACCGCCGTGTGCTT
TGACTTCGACGGCACTTTGGGGGATACGGAATCTCCTGCCATGGAGGTGG
CCTTTTGGGAGGTGGCTGCCTACTTGCCCAGCCTGCCCGTTGATGACCCT
GCCGCCCTCCAGTCGTTCAAGCAGGAGTTCATCGAGAACAACGCTGGCCG
AGCTTTCGAATTCATGGTCGAGGACATCAACAAGGAGCGAGAGGGCAAGG
GGCTGTCGACGGTGGAGGAGGCCTGGAGCGTCCTGCCCTCGGACCCCAAG
ATTCTCTCTCTGGTGGACGCCGCGCGGGCCAAGTTCCAGCTGAAGCCTCT
GACGGACGTGCTGGCTGCGCAGAGCTTCCCCTCCATCTTTACCATGCAGA
AGGAGGAGACGAATATGGCACTGGCTGTCGCGACGAAGGCCTGTGACGGG
GTCCTGGACGTATGTAACCTCTTAACCAAAGAAGGCACTCCCTTCTGCAT
CGCCACCACCAGCCCCAAGCCGCGTGTGCCGATCTCGGTCAAGGCCGCCA
GCCTCGAACCCTTTTTCCCCCCGGAGAAAATCCATTCAGGCGAGTCTGAT
TTCGACCCTCCTCGCTTTAAACCTGCCCCGGACGTGTACCTCAAGGCAGC
TGCTGCGGAGAAATGCGACCCGGAAGACTGCATTGCCGTTGAAGACTCGG
GCTCGGGTGTGGGGTCGGCGGCCAACGCCAGGATGGGCTTGATTATTGGA
TATGTAGGCGCGAGTCATATTCCTGCGGGTAAGAAAGAGAGCCATGCCAA
GATGTTAATGGCGGGGGAGAAGAGCGAGGACGGACGGGGGGCGCTGTTGG
TGGTGGAGGAGTTCCGGAACGTGGCTGTGTTGGTTAATGCCTTCAAGGCC
GCTCGGGCTAAGGGAGATGGGAAGGGTGGGAAGCCCGGTGCATTTGCCTT
TGGGGAGGACGTGATTCAAGGGCTGAAGGGGCGAGTGTGGCTGCCGGAGG
GAAAGGTGCTCGTGAACAACTAG
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Synonyms
Publications