NO13G03090.1, NO13G03090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03090.1
Unique NameNO13G03090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr13:885835..888775 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:885835..888775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G03090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03090NO13G03090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03090.1NO13G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03090.1.cds1NO13G03090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03090.1.cds2NO13G03090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03090.1.cds3NO13G03090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03090.1.cds4NO13G03090.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03090.1.cds5NO13G03090.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03090.1.cds6NO13G03090.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03090.1.cds7NO13G03090.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03090.1.cds8NO13G03090.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03090.1.cds9NO13G03090.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03090.1 ID=NO13G03090.1|Name=NO13G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp
ATGAACCTACCACCTGCCGAGACCGACGGAGAGACATCCAAGACCCTTTC
CCTCGACGCCTCCCCCTCCTCCCCTCCATTGTCTTCCTTCTCCTCCCTCT
CCACTTCCTCGTCTTCGACTCTCCTTCCTTGTCAGCTGTCGTCCTCCTCC
TCGTCGGAAGCAGCCGAGGATGGGAAATTTGGCGGGGAGCGGAGGGACAA
GCACAAGGACCCGGCGCTCATGCAGCTCCTGCTTTCCCAGCTCTCTTCCG
CCTCCACCGGCGTCTCCCTCACAGCTCAAACCAAAACAAAAGACGGGAGA
GAAGGCACCGAAAAGAAGAATAGTAAAAAGAAAATGAAGAATAAGAAGTC
CCAGACCAACGCAAAGAGACGTACAGCACGACGAGGGGGGGGAGAATCAA
AGGAGGAGGAGGAGGAGGAGGGAGAAATTCACCGTGAGATAGAGAGGATG
ATGATGGATGTACAGTGGGAGGAGGGGAACGAGGGAGAAAGAGAGGGAGG
GGAGGAGAAGAAGGAGGAGGAGTTAGATCTCCTTTTAGCGCCGGGAAGAG
AGGAGAAGGAAGGGGAGGAGGGAGCGGCGATGCTGCACAGGAAGGTGACT
TCCATTCTGGCGCTGTTGCAGGGGAGGAAGGAGGAGAATGATCGGTTGGA
AAATGACGTGGCCGCGGTGGCCCGCGCATACCTGGCCATGGGCAAGAAGA
ACGAGCTACTGCGCCTTCGGACAGATTCATTCCACGAGGAGAGGCGGAAA
AGGGAGGGCTTGAGGGAGAGGCTGGTGAGCATTAACAGGCTTTTGGCGCA
GCGGATCAAGAGCGTCCAACACCTGAAGGAGAGGGTGCAGGAGGAGGAGA
GGCAGAACCAGTGTGTGGCCGACGAGATTCAACGGCTCGAAGGTCACCGT
GAACAGATCGCCCTGTACAAGGAAGGGAGGGATGCGACCGAGAGATTGCT
CGAGTCGAAGAGGAAAGCCGCTATGGCGACGATGCAGCAAACCCTGGCAA
GCAAGCAGCACCAGCTCCAGTTGCATCTTAAATATTTTCAATCGATCCTT
CAGGCCGAAGAGATCAAGAAAAATGAGTGTGAAAAAATGGAAAAAGAATT
GGCCCGTATTACCAGCATGCGGGTCCAAGTGGAGCAGTCTCTCAAAGACA
AAGCCGCCTATGACAGCTCCAATCGGACATTGTTCTCTGAGCTCTCCTCG
TACCACGACCGTTACGTCCAGATCATCTCTTCCCTCCATGCATCTACAAC
TGACATGGCCACCAAAACCGCATCTTCCTCGGACTCCCTTGCCTCCCTTC
GCTCCCTTCTTCCCTCCCTCCTGGCATCCAACGTTAAGTTGGAGAAGGAA
GCGCGGCGCTTGCAGTCGGCAAGAGGGGAGAAAATCAGGCTGTTGCAACA
GTTGGAAGAGAGGGGGAAGGATGGAGGGAGGGACGAAGCGGTAGCGAAAG
AGGAGGAGGGTTGA
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protein sequence of NO13G03090.1

>NO13G03090.1-protein ID=NO13G03090.1-protein|Name=NO13G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MNLPPAETDGETSKTLSLDASPSSPPLSSFSSLSTSSSSTLLPCQLSSSS
SSEAAEDGKFGGERRDKHKDPALMQLLLSQLSSASTGVSLTAQTKTKDGR
EGTEKKNSKKKMKNKKSQTNAKRRTARRGGGESKEEEEEEGEIHREIERM
MMDVQWEEGNEGEREGGEEKKEEELDLLLAPGREEKEGEEGAAMLHRKVT
SILALLQGRKEENDRLENDVAAVARAYLAMGKKNELLRLRTDSFHEERRK
REGLRERLVSINRLLAQRIKSVQHLKERVQEEERQNQCVADEIQRLEGHR
EQIALYKEGRDATERLLESKRKAAMATMQQTLASKQHQLQLHLKYFQSIL
QAEEIKKNECEKMEKELARITSMRVQVEQSLKDKAAYDSSNRTLFSELSS
YHDRYVQIISSLHASTTDMATKTASSSDSLASLRSLLPSLLASNVKLEKE
ARRLQSARGEKIRLLQQLEERGKDGGRDEAVAKEEEG*
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mRNA from alignment at chr13:885835..888775+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03090.1 ID=NO13G03090.1|Name=NO13G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2941bp|location=Sequence derived from alignment at chr13:885835..888775+ (Nannochloropsis oceanica)
ATGAACCTACCACCTGCCGAGACCGACGGAGAGACATCCAAGACCCTTTC
CCTCGACGCCTCCCCCTCCTCCCCTCCATTGTCTTCCTTCTCCTCCCTCT
CCACTTCCTCGTCTTCGACTCTCCTTCCTTGTCAGCTGTCGTCCTCCTCC
TCGTCGGAAGCAGCCGAGGATGGGAAATTTGGCGGGGAGCGGAGGGACAA
GCACAAGGTAGGAAGGCAAAGAGGGCAAAGGAGGGTGGAATTAAACCCCA
TACGCGCTAACATGTGTAGAATATGACGTACGATTGATATGATGATCACC
CCGAACTCAACTTCCCTTATAGGACCCGGCGCTCATGCAGCTCCTGCTTT
CCCAGCTCTCTTCCGCCTCCACCGGCGTCTCCCTCACAGCTCAAACCAAA
ACAAAAGACGGGAGAGAAGGCACCGAAAAGAAGAATAGTAAAAAGAAAAT
GAAGAATAAGAAGTCCCAGACCAACGCAAAGAGACGTACAGCACGACGAG
GGGGGGGAGAATCAAAGGAGGAGGAGGAGGAGGAGGGAGAAATTCACCGT
GAGATAGAGAGGATGATGATGGATGTACAGTGGGAGGAGGGGAACGAGGG
AGAAAGAGAGGGAGGGGAGGAGAAGAAGGAGGAGGAGTTAGATCTCCTTT
TAGCGCCGGGAAGAGAGGAGAAGGAAGGGGAGGAGGGAGCGGCGATGCTG
CACAGGAAGGTGACTTCCATTCTGGCGCTGTTGCAGGGGAGGAAGGAGGA
GAATGATCGGTACGTGGATTAGGGGCAAGCCCTCCCTCCCTCTTTATTTG
TCTGTCCTAACTCCTCTTGACGTTGTACGACACGTTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCAGGTTGGAAAATGACGTGGCCGCGGTGGCCCGCGCATACCT
GGCCATGGGCAAGAAGAACGAGCTACTGCGCCTTCGGACAGATTCATTCC
ACGAGGAGAGGCGGAAAAGGGAGGGCTTGAGGGAGAGGCTGGTGAGCATT
AACAGGCTTTTGGCGCAGCGGATCAAGGTAAGGAAGAGGGAGGGAGGGAG
AGAGGAAGAGGGGGAGGGAGGGCTTTCGACACTTACTTCACCTCTACACA
ATGCCAACTCAACAACAACAATGACGACATGTAGGAATTTCAAGAGACGC
ATCCGTCCTTCTCCTCCCCCCCTCTTCTTCCTCCTCTTCTTCCTCTTCCT
CCTCCTGTCCTGTTCGCCCATCAGACAGCGACGGGCAGAGCCCGCCCGAG
GAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGGCGGCGATACTGACGT
GGCAACGATGCGTGCCACATTCTTGAAGAGCGTCCAACACCTGAAGGAGA
GGGTGCAGGAGGAGGAGAGGCAGGTAGGGAGGGAGGGAAGGAGGGAGGAT
AAGTCGATTTAATACGTGTCTAATGGATCCCTTCCTGAGCGTTTTCCCTC
CCTCCCTCCTTCCCTCCCTTCCTCCCCCTTTCCCTGGATTATCACCTGTT
CACTCCTCCTTCTCTCCCTCCCGCCCTCCCTCCCTAGAACCAGTGTGTGG
CCGACGAGATTCAACGGCTCGAAGGTCACCGTGAACAGATCGCCCTGTAC
AAGGAAGGGAGGGATGCGACCGAGGTAATGGCGGGAGGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGAAGAACGAAAATGGGCAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGATAAG
GATGAAGGGAGGGGTTCTGATCCATTTATAATTCACCCACCCACCCACTC
ACAGAGATTGCTCGAGTCGAAGAGGAAAGCCGCTATGGCGACGATGCAGC
AAACGTCAGTCCCTCCCTCCCTCCCTCCCTCAGCTTTTGCATTTTTCTCC
CTTTCGCCTCCTCCCTTTTCTTGCCCGCTATCTCCTTCCCCCTTCCCGTA
AGTCCCTTCCAATCTCCTCATTTCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCCCCATCCCTCCCTCCCTGCAGCCTGGCAAGCAAGCAG
CACCAGCTCCAGTTGCATCTTAAATATTTTCAATCGATCCTTCAGGCCGA
AGAGATCAAGAAAAATGAGTGTGAAAAAATGGAAAAAGAAGTAGGTCGGG
GGGGAGAGGGATTAGTAGGCGGTAGAAGAGGGGCGTGGTGGACTGCGAAA
GTGGAAGGAGGAAGGGAAAGAGGGAGGGATGCAAGGAAGGATGGGAAGAA
GGAGGGAAAGAGGAAAGGAGGGCGGGAAAATGGGAGGGTGCCAGCCAACG
CGTGAAGCCATCCACACACCTACCGTCAATTAACCTCCCCTCCATCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCAGTTGGCCCGT
ATTACCAGCATGCGGGTCCAAGTGGAGCAGTCTCTCAAAGACAAAGCCGC
CTATGACAGCTCCAATCGGGTACTCCTTCCCTCCCTCCCTCCCTCCATCC
ATCGCCATCTTCCTCCCTCTTCCACTGTATGCCCTCCCTCCCTCTGTCCC
TCCCTGTACGCCATTTCTTCACCCCTCACCCCTCCTTCCTTCCCTCCCTC
TAGACATTGTTCTCTGAGCTCTCCTCGTACCACGACCGTTACGTCCAGAT
CATCTCTTCCCTCCATGCATCTACAACTGACATGGCCACCAAAACCGCAT
CTTCCTCGGACTCCCTTGCCTCCCTTCGCTCCCTTCTTCCCTCCCTCCTG
GCATCCAACGTTAAGTTGGAGAAGGAAGCGCGGCGCTTGCAGTCGGCAAG
AGGGGAGAAAATCAGGCTGTTGCAACAGTTGGAAGAGAGGGGGAAGGATG
GAGGGAGGGACGAAGCGGTAGCGAAAGAGGAGGAGGGTTGA
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Coding sequence (CDS) from alignment at chr13:885835..888775+

>NO13G03090.1 ID=NO13G03090.1|Name=NO13G03090.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr13:885835..888775+ (Nannochloropsis oceanica)
ATGAACCTACCACCTGCCGAGACCGACGGAGAGACATCCAAGACCCTTTC
CCTCGACGCCTCCCCCTCCTCCCCTCCATTGTCTTCCTTCTCCTCCCTCT
CCACTTCCTCGTCTTCGACTCTCCTTCCTTGTCAGCTGTCGTCCTCCTCC
TCGTCGGAAGCAGCCGAGGATGGGAAATTTGGCGGGGAGCGGAGGGACAA
GCACAAGGACCCGGCGCTCATGCAGCTCCTGCTTTCCCAGCTCTCTTCCG
CCTCCACCGGCGTCTCCCTCACAGCTCAAACCAAAACAAAAGACGGGAGA
GAAGGCACCGAAAAGAAGAATAGTAAAAAGAAAATGAAGAATAAGAAGTC
CCAGACCAACGCAAAGAGACGTACAGCACGACGAGGGGGGGGAGAATCAA
AGGAGGAGGAGGAGGAGGAGGGAGAAATTCACCGTGAGATAGAGAGGATG
ATGATGGATGTACAGTGGGAGGAGGGGAACGAGGGAGAAAGAGAGGGAGG
GGAGGAGAAGAAGGAGGAGGAGTTAGATCTCCTTTTAGCGCCGGGAAGAG
AGGAGAAGGAAGGGGAGGAGGGAGCGGCGATGCTGCACAGGAAGGTGACT
TCCATTCTGGCGCTGTTGCAGGGGAGGAAGGAGGAGAATGATCGGTTGGA
AAATGACGTGGCCGCGGTGGCCCGCGCATACCTGGCCATGGGCAAGAAGA
ACGAGCTACTGCGCCTTCGGACAGATTCATTCCACGAGGAGAGGCGGAAA
AGGGAGGGCTTGAGGGAGAGGCTGGTGAGCATTAACAGGCTTTTGGCGCA
GCGGATCAAGAGCGTCCAACACCTGAAGGAGAGGGTGCAGGAGGAGGAGA
GGCAGAACCAGTGTGTGGCCGACGAGATTCAACGGCTCGAAGGTCACCGT
GAACAGATCGCCCTGTACAAGGAAGGGAGGGATGCGACCGAGAGATTGCT
CGAGTCGAAGAGGAAAGCCGCTATGGCGACGATGCAGCAAACCCTGGCAA
GCAAGCAGCACCAGCTCCAGTTGCATCTTAAATATTTTCAATCGATCCTT
CAGGCCGAAGAGATCAAGAAAAATGAGTGTGAAAAAATGGAAAAAGAATT
GGCCCGTATTACCAGCATGCGGGTCCAAGTGGAGCAGTCTCTCAAAGACA
AAGCCGCCTATGACAGCTCCAATCGGACATTGTTCTCTGAGCTCTCCTCG
TACCACGACCGTTACGTCCAGATCATCTCTTCCCTCCATGCATCTACAAC
TGACATGGCCACCAAAACCGCATCTTCCTCGGACTCCCTTGCCTCCCTTC
GCTCCCTTCTTCCCTCCCTCCTGGCATCCAACGTTAAGTTGGAGAAGGAA
GCGCGGCGCTTGCAGTCGGCAAGAGGGGAGAAAATCAGGCTGTTGCAACA
GTTGGAAGAGAGGGGGAAGGATGGAGGGAGGGACGAAGCGGTAGCGAAAG
AGGAGGAGGGTTGA
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Synonyms
Publications