NO13G02900.1, NO13G02900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02900.1
Unique NameNO13G02900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length788
Alignment locationchr13:807270..808238 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:807270..808238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02900.1 vs.
Match: EWM21942.1 (thioredoxin-like protein 4a [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 2.300e-74
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0 
Query:   73 LLSIPQMSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            LL   +MSYMLPHLRSGWAVDQAILNEE+KVVVIRFGHDENETCMQMDE+LYKISEDVRNFAAIYLVDT+EV DFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLI+DKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY
Sbjct:   35 LLPSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
The following BLAST results are available for this feature:
BLAST of NO13G02900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21942.12.300e-7493.92thioredoxin-like protein 4a [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02900NO13G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02900.1NO13G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02900.1.cds1NO13G02900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02900.1.cds2NO13G02900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02900.1 ID=NO13G02900.1|Name=NO13G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=788bp
TGTTACTACCTCGATCTTACTAAGGTAAGCCAAAGACCTCTGCTGGCACC
ACAACTACGGGATCATTCCTGCTACCGCGTGCCGACAGACAGAAAGCAGG
AATTTCTCAGTGTGTGGACGGGGAGATGCGTGACTGTGGCGGCACAGAGA
ATGCTTGCCTCCTCACCATTATCCTCATAATCATCTCTTTTCGATCAACA
AACTTCCGCCCTTTCTATCCTTCCCGTCCTGTCATTTTCTTCCCAGACAT
GCACAGAAACGCAGTTTGGGGTCTTCTATCTGTATATCCTTGCCTCCTCT
TGAGCGCATTCACTCCGCATCTCTCACCCATCCCTCCCTCCCTTCTCTCC
ATCCCTCAGATGTCGTACATGCTTCCTCACCTCCGTTCCGGCTGGGCCGT
GGACCAAGCCATTCTTAACGAAGAAAGCAAGGTGGTGGTAATTCGATTCG
GGCACGATGAGAACGAGACGTGCATGCAGATGGATGAAGTCCTATACAAG
ATTAGTGAGGACGTGCGGAACTTCGCGGCGATCTATCTTGTGGACACCTC
AGAGGTAGCGGACTTCAACGTCATGTACGAGCTGTACGACGAGTGCACTT
GCATGTTTTTCTTTCGTAACAAGCATATCATGATTGACCTCGGCACAGGA
AACAACAACAAGATCAACTTTCTGATCAATGACAAGCAGGAGATGATCGA
CATAATCGAAACGGTCTACAGAGGGGCCCGTAAAGGCAGGGGGCTGGTCG
TCTCGCCCAAGGACTACTCGACGCGTTATCGATACTAA
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protein sequence of NO13G02900.1

>NO13G02900.1-protein ID=NO13G02900.1-protein|Name=NO13G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MRDCGGTENACLLTIILIIISFRSTNFRPFYPSRPVIFFPDMHRNAVWGL
LSVYPCLLLSAFTPHLSPIPPSLLSIPQMSYMLPHLRSGWAVDQAILNEE
SKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVM
YELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRG
ARKGRGLVVSPKDYSTRYRY*
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mRNA from alignment at chr13:807270..808238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02900.1 ID=NO13G02900.1|Name=NO13G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp|location=Sequence derived from alignment at chr13:807270..808238+ (Nannochloropsis oceanica)
TGTTACTACCTCGATCTTACTAAGGTAAGCCAAAGACCTCTGCTGGCACC
ACAACTACGGGATCATTCCTGCTACCGCGTGCCGACAGACAGAAAGCAGG
AATTTCTCAGTGTGTGGACGGGGAGATGCGTGACTGTGGCGGCACAGAGA
ATGCTTGCCTCCTCACCATTATCCTCATAATCATCTCTTTTCGATCAACA
AACTTCCGCCCTTTCTATCCTTCCCGTCCTGTCATTTTCTTCCCAGACAT
GCACAGAAACGCAGTTTGGGGTCTTCTATCTGTATATCCTTGCCTCCTCT
TGAGCGCATTCACTCCGCATCTCTCACCCATCCCTCCCTCCCTTCTCTCC
ATCCCTCAGATGTCGTACATGCTTCCTCACCTCCGTTCCGGCTGGGCCGT
GGACCAAGCCATTCTTAACGAAGAAAGCAAGGTGGTGGTAATTCGATTCG
GGCACGATGAGAACGAGACGTGCATGCAGATGGATGAAGTCCTATACAAG
ATTAGTGAGGACGTGCGGAACTTCGCGGCGATCTATCTTGTGGACACCTC
AGAGGTGAGCTCCCCCTCCCTCCTTCCTGGCTCAAGAAAGAAGATCTGGG
TACATTCAACACCAAACTGAGAGGATGTTCGGTTTTGGTCACGTAAAATT
GTTATGTAGCCGTTGACGCATCCGCCCCTCCCACACATGTAATATATATA
TGTATGTATACATACATATGCATCTATAAACACAGGTAGCGGACTTCAAC
GTCATGTACGAGCTGTACGACGAGTGCACTTGCATGTTTTTCTTTCGTAA
CAAGCATATCATGATTGACCTCGGCACAGGAAACAACAACAAGATCAACT
TTCTGATCAATGACAAGCAGGAGATGATCGACATAATCGAAACGGTCTAC
AGAGGGGCCCGTAAAGGCAGGGGGCTGGTCGTCTCGCCCAAGGACTACTC
GACGCGTTATCGATACTAA
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Coding sequence (CDS) from alignment at chr13:807270..808238+

>NO13G02900.1 ID=NO13G02900.1|Name=NO13G02900.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr13:807270..808238+ (Nannochloropsis oceanica)
ATGCGTGACTGTGGCGGCACAGAGAATGCTTGCCTCCTCACCATTATCCT
CATAATCATCTCTTTTCGATCAACAAACTTCCGCCCTTTCTATCCTTCCC
GTCCTGTCATTTTCTTCCCAGACATGCACAGAAACGCAGTTTGGGGTCTT
CTATCTGTATATCCTTGCCTCCTCTTGAGCGCATTCACTCCGCATCTCTC
ACCCATCCCTCCCTCCCTTCTCTCCATCCCTCAGATGTCGTACATGCTTC
CTCACCTCCGTTCCGGCTGGGCCGTGGACCAAGCCATTCTTAACGAAGAA
AGCAAGGTGGTGGTAATTCGATTCGGGCACGATGAGAACGAGACGTGCAT
GCAGATGGATGAAGTCCTATACAAGATTAGTGAGGACGTGCGGAACTTCG
CGGCGATCTATCTTGTGGACACCTCAGAGGTAGCGGACTTCAACGTCATG
TACGAGCTGTACGACGAGTGCACTTGCATGTTTTTCTTTCGTAACAAGCA
TATCATGATTGACCTCGGCACAGGAAACAACAACAAGATCAACTTTCTGA
TCAATGACAAGCAGGAGATGATCGACATAATCGAAACGGTCTACAGAGGG
GCCCGTAAAGGCAGGGGGCTGGTCGTCTCGCCCAAGGACTACTCGACGCG
TTATCGATACTAA
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Synonyms
Publications