NO13G02860.1, NO13G02860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02860.1
Unique NameNO13G02860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1945
Alignment locationchr13:796193..798137 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:796193..798137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G02860.1 vs.
Match: XP_005852776.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526]; EKU23058.1 light-harvesting protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 362.8 bits (930), Expect = 7.100e-97
Identity = 183/213 (85.92%), Postives = 197/213 (92.49%), Query Frame = 0 
Query:    1 MRVAAFFTATLATVSAFVPRASFPSSSTVRRSQGRVSMDLSGLVGSDVEIPEFDPLGLSKGKDDETLAWYRAAELKHGRVCMLASVGYIVQGLYHLPDGPFEASKPVDALIKVSTERPLAAVQIGIAIAALEVLGASIQKYTAPGDLTFDPLGLKPEDEEEFAEVQLKELKNGRLAMLATAGLAVQEYVTGQGAVEQLVSGHFSPFGDGQGAF 214
            MRVAA   ATLAT SAF+  AS PSSS+ RR+QGRVSMD+SG+VGSDVE+PEFDPLGL+K KD+ETL WYRAAELKHGRVCMLASVGY+VQGLYHLPDGPFEASKP+DAL+KVS+ERPLAAVQI IAIAALEVLGASIQKYTAPGDLTFDPLGLKPED EE AE+QLKELKNGRLAMLATAGLA QEYVTGQG VEQL+SGH SPFGDGQGAF
Sbjct:    1 MRVAAALIATLATASAFLAPASLPSSSSFRRTQGRVSMDISGIVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPDGPFEASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKYTAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 213
The following BLAST results are available for this feature:
BLAST of NO13G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852776.17.100e-9785.92light-harvesting protein [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02860NO13G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02860.1NO13G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02860.1.cds1NO13G02860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02860.1 ID=NO13G02860.1|Name=NO13G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp
GCAGCTTACAAGGCACTTATTTGTTGCTATTTGATGCATCTTGTCTCTCT
GCCGTCAGCAGGCATGTGTCATAATTAAATTTATCAATACGATGGCATTG
TCTAGCACTTGGCGGCTCGGAACGACGACGCTCACCTGGGAAACCAGGTC
ATTGAAGATGAATCCAAGCCAAGCCAACGGCTCCCAAGACGATGCGCGCG
TGGACGGTGTCCACGTCTGTACATGCAGAGATAGTAAAACACTCGCAGTA
TGCAGAGAAAGAAGGAAAAGAGCTGCTGCCCTGCGTAGCTCACTTACTCC
TTCGTGGTTGAGTTTGAGTCCACGGGCCGGGTCGGACCAGGAGGAGAGCA
GTTGATCAGGAAATCCTCATCTCTTCTCGCCGCCTTGTGTTGGCCTTTGC
CTTGCATTCTTCTTGTCGTTTAATGATGTCTGAGATATCCAATGGTTGGA
GCCGTGCCTTGAGTACCGTGTTTGTATCGTCCTGTCCGTGGGAATGCTGC
GCTTCTGCGTATGTGCTCCACGCTGGGGTGCTTCACGCCAATCAACCCAT
CCTAGTATATACATCAAGCAAGACCCAAGAGGGTCCATCTGAGAGCGAGA
TTTCTCATGATATATGTGTAAAAGGCACATGCACACACGCTTCCATAATA
GATAAAGAGAGTCAGCAACAACTGTTGCATCTGTTTGCCTGGCTCCCCCG
CTGCTGCACGCCACAGGTCTCGTCTTGCCTCCCCTCCTTCGTCCATCCCC
GCTGGGCATCCAGACAGATCCATGAGGCAGGCAGAGGCTCTCAGGCCAGA
CACGAATAACAACAGAGCAAACACGCTCGACTCTCTTCAAGCCAACCGCC
ATATCCTCATCTCATCCGTCTTCCCTCCCCCCCCCTCATTCCCTCCCTTC
TCGTTCCGCACCTAACAGCCCACCCCTCCATAATCATGCGCGTCGCTGCC
TTTTTCACGGCCACCTTGGCCACCGTCTCCGCATTCGTCCCCCGCGCCTC
CTTTCCTTCCTCTTCCACCGTCCGACGCAGCCAGGGCCGCGTGTCCATGG
ACCTGTCTGGCCTCGTCGGCTCCGATGTTGAGATCCCTGAGTTCGATCCC
CTTGGCTTGAGCAAGGGTAAGGATGACGAGACCTTGGCGTGGTACCGCGC
CGCTGAGCTGAAGCACGGCCGAGTGTGCATGCTTGCGTCTGTCGGGTACA
TTGTCCAGGGGCTGTACCACTTGCCCGATGGGCCGTTCGAGGCGTCCAAG
CCTGTGGATGCCCTGATTAAGGTCTCGACCGAGCGTCCCCTGGCCGCCGT
GCAGATCGGCATTGCCATCGCGGCCTTGGAGGTGCTGGGTGCATCCATCC
AGAAGTACACTGCCCCCGGAGACCTGACATTTGACCCCCTTGGCCTCAAG
CCCGAGGACGAGGAGGAGTTCGCTGAGGTTCAGCTGAAGGAGCTGAAGAA
CGGCCGATTGGCAATGTTGGCGACGGCGGGCTTGGCTGTGCAGGAGTACG
TGACGGGGCAGGGGGCAGTTGAGCAGTTGGTGAGCGGACACTTCTCCCCG
TTCGGTGATGGACAGGGGGCGTTCTAGACGTGTTGATTACTGCGGAGGGA
AGGAGGAAAGCAGCGGTCGATTGTGTGTTCAGTGAAGAGGAGCGTTTCTG
ACTTGTTGAATGTTGTCGATTTCGTAGCAGGAAACAGGGAAAGAGGGTGA
AGAGGCTGATGTTTGTGTTTCGTGAAGGACGAGGATCATGCGGCGCCTTC
GCTTTTCCTTTGATCTGTTAAGAGCTACAGACAAGGTCAAAGACAAGTCA
AAAAAAACAATAGAAGAAAAAAAGATGAAAAAAAATAATATGAAAGAGCG
TTTATTTCAGGAAAACCCAGCGGCGACGCACTCAAGAAACGGAAGATGAG
TAGGTGGAAAACGAGAACGAGGACGAGGATGACGGAAACCTTCGG
back to top

protein sequence of NO13G02860.1

>NO13G02860.1-protein ID=NO13G02860.1-protein|Name=NO13G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MRVAAFFTATLATVSAFVPRASFPSSSTVRRSQGRVSMDLSGLVGSDVEI
PEFDPLGLSKGKDDETLAWYRAAELKHGRVCMLASVGYIVQGLYHLPDGP
FEASKPVDALIKVSTERPLAAVQIGIAIAALEVLGASIQKYTAPGDLTFD
PLGLKPEDEEEFAEVQLKELKNGRLAMLATAGLAVQEYVTGQGAVEQLVS
GHFSPFGDGQGAF*
back to top

mRNA from alignment at chr13:796193..798137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02860.1 ID=NO13G02860.1|Name=NO13G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at chr13:796193..798137- (Nannochloropsis oceanica)
GCAGCTTACAAGGCACTTATTTGTTGCTATTTGATGCATCTTGTCTCTCT
GCCGTCAGCAGGCATGTGTCATAATTAAATTTATCAATACGATGGCATTG
TCTAGCACTTGGCGGCTCGGAACGACGACGCTCACCTGGGAAACCAGGTC
ATTGAAGATGAATCCAAGCCAAGCCAACGGCTCCCAAGACGATGCGCGCG
TGGACGGTGTCCACGTCTGTACATGCAGAGATAGTAAAACACTCGCAGTA
TGCAGAGAAAGAAGGAAAAGAGCTGCTGCCCTGCGTAGCTCACTTACTCC
TTCGTGGTTGAGTTTGAGTCCACGGGCCGGGTCGGACCAGGAGGAGAGCA
GTTGATCAGGAAATCCTCATCTCTTCTCGCCGCCTTGTGTTGGCCTTTGC
CTTGCATTCTTCTTGTCGTTTAATGATGTCTGAGATATCCAATGGTTGGA
GCCGTGCCTTGAGTACCGTGTTTGTATCGTCCTGTCCGTGGGAATGCTGC
GCTTCTGCGTATGTGCTCCACGCTGGGGTGCTTCACGCCAATCAACCCAT
CCTAGTATATACATCAAGCAAGACCCAAGAGGGTCCATCTGAGAGCGAGA
TTTCTCATGATATATGTGTAAAAGGCACATGCACACACGCTTCCATAATA
GATAAAGAGAGTCAGCAACAACTGTTGCATCTGTTTGCCTGGCTCCCCCG
CTGCTGCACGCCACAGGTCTCGTCTTGCCTCCCCTCCTTCGTCCATCCCC
GCTGGGCATCCAGACAGATCCATGAGGCAGGCAGAGGCTCTCAGGCCAGA
CACGAATAACAACAGAGCAAACACGCTCGACTCTCTTCAAGCCAACCGCC
ATATCCTCATCTCATCCGTCTTCCCTCCCCCCCCCTCATTCCCTCCCTTC
TCGTTCCGCACCTAACAGCCCACCCCTCCATAATCATGCGCGTCGCTGCC
TTTTTCACGGCCACCTTGGCCACCGTCTCCGCATTCGTCCCCCGCGCCTC
CTTTCCTTCCTCTTCCACCGTCCGACGCAGCCAGGGCCGCGTGTCCATGG
ACCTGTCTGGCCTCGTCGGCTCCGATGTTGAGATCCCTGAGTTCGATCCC
CTTGGCTTGAGCAAGGGTAAGGATGACGAGACCTTGGCGTGGTACCGCGC
CGCTGAGCTGAAGCACGGCCGAGTGTGCATGCTTGCGTCTGTCGGGTACA
TTGTCCAGGGGCTGTACCACTTGCCCGATGGGCCGTTCGAGGCGTCCAAG
CCTGTGGATGCCCTGATTAAGGTCTCGACCGAGCGTCCCCTGGCCGCCGT
GCAGATCGGCATTGCCATCGCGGCCTTGGAGGTGCTGGGTGCATCCATCC
AGAAGTACACTGCCCCCGGAGACCTGACATTTGACCCCCTTGGCCTCAAG
CCCGAGGACGAGGAGGAGTTCGCTGAGGTTCAGCTGAAGGAGCTGAAGAA
CGGCCGATTGGCAATGTTGGCGACGGCGGGCTTGGCTGTGCAGGAGTACG
TGACGGGGCAGGGGGCAGTTGAGCAGTTGGTGAGCGGACACTTCTCCCCG
TTCGGTGATGGACAGGGGGCGTTCTAGACGTGTTGATTACTGCGGAGGGA
AGGAGGAAAGCAGCGGTCGATTGTGTGTTCAGTGAAGAGGAGCGTTTCTG
ACTTGTTGAATGTTGTCGATTTCGTAGCAGGAAACAGGGAAAGAGGGTGA
AGAGGCTGATGTTTGTGTTTCGTGAAGGACGAGGATCATGCGGCGCCTTC
GCTTTTCCTTTGATCTGTTAAGAGCTACAGACAAGGTCAAAGACAAGTCA
AAAAAAACAATAGAAGAAAAAAAGATGAAAAAAAATAATATGAAAGAGCG
TTTATTTCAGGAAAACCCAGCGGCGACGCACTCAAGAAACGGAAGATGAG
TAGGTGGAAAACGAGAACGAGGACGAGGATGACGGAAACCTTCGG
back to top

Coding sequence (CDS) from alignment at chr13:796193..798137-

>NO13G02860.1 ID=NO13G02860.1|Name=NO13G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr13:796193..798137- (Nannochloropsis oceanica)
ATGCGCGTCGCTGCCTTTTTCACGGCCACCTTGGCCACCGTCTCCGCATT
CGTCCCCCGCGCCTCCTTTCCTTCCTCTTCCACCGTCCGACGCAGCCAGG
GCCGCGTGTCCATGGACCTGTCTGGCCTCGTCGGCTCCGATGTTGAGATC
CCTGAGTTCGATCCCCTTGGCTTGAGCAAGGGTAAGGATGACGAGACCTT
GGCGTGGTACCGCGCCGCTGAGCTGAAGCACGGCCGAGTGTGCATGCTTG
CGTCTGTCGGGTACATTGTCCAGGGGCTGTACCACTTGCCCGATGGGCCG
TTCGAGGCGTCCAAGCCTGTGGATGCCCTGATTAAGGTCTCGACCGAGCG
TCCCCTGGCCGCCGTGCAGATCGGCATTGCCATCGCGGCCTTGGAGGTGC
TGGGTGCATCCATCCAGAAGTACACTGCCCCCGGAGACCTGACATTTGAC
CCCCTTGGCCTCAAGCCCGAGGACGAGGAGGAGTTCGCTGAGGTTCAGCT
GAAGGAGCTGAAGAACGGCCGATTGGCAATGTTGGCGACGGCGGGCTTGG
CTGTGCAGGAGTACGTGACGGGGCAGGGGGCAGTTGAGCAGTTGGTGAGC
GGACACTTCTCCCCGTTCGGTGATGGACAGGGGGCGTTCTAG
back to top
Synonyms
Publications