NO13G02690.1, NO13G02690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02690.1
Unique NameNO13G02690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1142
Alignment locationchr13:741126..742622 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:741126..742622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02690.1 vs.
Match: EWM21934.1 (hypothetical protein Naga_100220g2 [Nannochloropsis gaditana])

HSP 1 Score: 448.4 bits (1152), Expect = 2.100e-122
Identity = 219/335 (65.37%), Postives = 257/335 (76.72%), Query Frame = 0 
Query:   12 HNAATLVLFLLLLLLHSLASYSAFIPESSVRIGKAFNRIIIPSSRAVPRAGEDAAIDVPATLYVEDPPIWPVPASLRRAESLGGGEPSYIRFLGLAKVFEARDGAKLAELFDTDSLFRHAIRVAMRDDLFVPDPTRSEKVNHFLKDLGSSLHVSWEKSPTQYANLSRVFKEYGIQGLDGVTFIKSLGALAGGGQQCEDADGFLLREQRFGSLIDIVTAGNRLKPAHSWHQDCNLPQTTVMLGFPKSNEYKGAGVFSHAIKISHQIRDQVPGGGAVVQYDEFEGVGQSDDLPNPLPESVILRPWYAKGREIMVYDDSWHIHSAPDHIHRASIWRFM 347
            H    L   L++ LL S++     +P S V  G+  +R    +       G+    +V  T Y ED  IW VP  ++R E     +P+Y+ FLGLA+VF+ +DG KLA+LFDTD  FRHAIRVAMR+DLF+PDPTRSEKVN FLKDLGSSLHV WEKSPT YANLSRVFK+YGI  LDG TFIK LG +AGGG Q +D+DGFLLR++RFGSLIDIVTAG+RLKPAHSWHQDCNLPQ TVMLGFPK++ Y G GVFSHAIK+SH ++DQVPGGG VVQYDE+EGVG+   LPN LPESVILRP Y KGREIM+YDDSWHIHSAPDHI+R S+WRFM
Sbjct:   13 HYQKRLFRMLVVFLLKSISCAFQGMP-SLVNSGRGIDRRGPHTHVTSSIRGQADTSNVLVTSYAEDAVIWDVPVGIQRGEPPSDLKPNYVTFLGLAEVFQDQDGIKLADLFDTDDGFRHAIRVAMREDLFIPDPTRSEKVNRFLKDLGSSLHVCWEKSPTGYANLSRVFKQYGIGNLDGATFIKKLGGMAGGGPQIKDSDGFLLRQKRFGSLIDIVTAGSRLKPAHSWHQDCNLPQMTVMLGFPKTSGYLGTGVFSHAIKLSHPLKDQVPGGGQVVQYDEYEGVGKDPKLPNILPESVILRPRYGKGREIMIYDDSWHIHSAPDHIYRTSVWRFM 346
The following BLAST results are available for this feature:
BLAST of NO13G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21934.12.100e-12265.37hypothetical protein Naga_100220g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02690NO13G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02690.1NO13G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02690.1.cds1NO13G02690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02690.1.cds2NO13G02690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02690.1.cds3NO13G02690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02690.1 ID=NO13G02690.1|Name=NO13G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp
AAACACAGACACATACTTCCTCTTCCGTGTCTTGGTATCATCATAGCCAC
CCACGGCGCTGCCATGCCCTCTGAGTTTTATCGCGGGGCGTCCAGACATA
ATGCAGCCACCCTTGTCCTCTTCCTCCTACTCCTGCTCCTGCACTCCTTG
GCCTCCTATAGCGCATTTATCCCTGAGTCTTCTGTCCGCATTGGTAAGGC
TTTCAATAGGATTATAATTCCTTCTAGTCGTGCAGTTCCCAGAGCTGGCG
AGGATGCTGCCATCGATGTGCCCGCGACTCTGTATGTTGAGGACCCGCCC
ATCTGGCCTGTGCCAGCCTCGCTTCGACGTGCGGAATCCTTAGGGGGGGG
CGAACCCAGCTATATTAGGTTCTTGGGCTTGGCGAAAGTCTTTGAAGCGC
GGGATGGGGCCAAGTTAGCTGAGCTGTTTGATACTGACAGTTTGTTTAGG
CATGCCATCCGAGTAGCAATGCGCGATGACTTATTTGTTCCAGACCCCAC
TCGTTCAGAGAAGGTAAATCATTTCCTGAAAGACCTTGGCTCCTCCTTGC
ACGTCAGCTGGGAAAAATCGCCCACCCAATACGCCAATCTGTCCCGGGTC
TTCAAAGAATATGGCATTCAGGGGTTGGACGGAGTAACCTTTATCAAGTC
TCTTGGTGCCTTGGCGGGTGGTGGCCAGCAATGCGAAGACGCAGACGGAT
TTCTACTCCGTGAGCAACGCTTTGGAAGTTTGATTGATATTGTGACTGCT
GGGAACCGCCTCAAGCCCGCTCATTCGTGGCACCAGGACTGCAACCTGCC
TCAGACAACGGTTATGTTGGGTTTTCCCAAGAGTAATGAGTACAAGGGCG
CGGGCGTCTTTTCCCACGCCATCAAGATATCTCACCAAATAAGGGATCAG
GTACCAGGGGGCGGGGCGGTTGTCCAATACGATGAGTTCGAAGGAGTTGG
ACAGAGCGACGACCTGCCGAACCCTTTGCCAGAATCCGTTATTCTGCGAC
CCTGGTACGCGAAAGGTCGCGAAATTATGGTTTATGATGACAGTTGGCAC
ATTCACTCGGCGCCAGACCATATCCATCGGGCGTCGATTTGGCGCTTTAT
GTGATTTGTAAAATGGAAGGAATAGCGGAAGGATTTAAGCAT
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protein sequence of NO13G02690.1

>NO13G02690.1-protein ID=NO13G02690.1-protein|Name=NO13G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MPSEFYRGASRHNAATLVLFLLLLLLHSLASYSAFIPESSVRIGKAFNRI
IIPSSRAVPRAGEDAAIDVPATLYVEDPPIWPVPASLRRAESLGGGEPSY
IRFLGLAKVFEARDGAKLAELFDTDSLFRHAIRVAMRDDLFVPDPTRSEK
VNHFLKDLGSSLHVSWEKSPTQYANLSRVFKEYGIQGLDGVTFIKSLGAL
AGGGQQCEDADGFLLREQRFGSLIDIVTAGNRLKPAHSWHQDCNLPQTTV
MLGFPKSNEYKGAGVFSHAIKISHQIRDQVPGGGAVVQYDEFEGVGQSDD
LPNPLPESVILRPWYAKGREIMVYDDSWHIHSAPDHIHRASIWRFM*
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mRNA from alignment at chr13:741126..742622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02690.1 ID=NO13G02690.1|Name=NO13G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at chr13:741126..742622- (Nannochloropsis oceanica)
AAACACAGACACATACTTCCTCTTCCGTGTCTTGGTATCATCATAGCCAC
CCACGGCGCTGCCATGCCCTCTGAGTTTTATCGCGGGGCGTCCAGACATA
ATGCAGCCACCCTTGTCCTCTTCCTCCTACTCCTGCTCCTGCACTCCTTG
GCCTCCTATAGCGCATTTATCCCTGAGTCTTCTGTCCGCATTGGTAAGGC
TTTCAATAGGATTATAATTCCTTCTAGTCGTGCAGTTCCCAGAGCTGGCG
AGGATGCTGCCATCGATGTGCCCGCGACTCTGTATGTTGAGGACCCGCCC
ATCTGGCCTGTGCCAGCCTCGCTTCGACGTGCGGAATCCTTAGGGGGGGG
CGAACCCAGCTATATTAGGTTCTTGGGCTTGGCGAAAGTCTTTGAAGCGC
GGGATGGGGCCAAGTTAGCTGAGCTGTTTGATACTGACAGTTTGTTTAGG
TGCGTGGCATTCTTTGCTTCCCTTCCCATCCCTTCCTTCCTCCTATGTCC
CCCCTAACCATTTATATTTTTTTCCTCAGGCATGCCATCCGAGTAGCAAT
GCGCGATGACTTATTTGTTCCAGACCCCACTCGTTCAGAGAAGGTAAATC
ATTTCCTGAAAGACCTTGGCTCCTCCTTGCACGTCAGCTGGGAAAAATCG
CCCACCCAATACGCCAATCTGTCCCGGTAAGTTCCAGATGAGCGAAATTT
AAGTGAATTCGTACAGTGTGCCGACGTATTCAGCGTTGGTTAGTCCCTTT
TCTAACTTCTCTTTTTTCAGGTCGACTCGAATGGGAGCCCCCGTCCGGCG
CAGATATACACGTATCCACGCTATCTTTCTTGCGCCATCCTTCTCCTTTC
CACCCACCCTCCCTCCCTCCCTCTCCCCCTTCTTTCGCAATGGATACAAT
CGATGTTATACTTATGAAAGATATGCATGAAAACCTACCAAAAAATACAA
GGGTCTTCAAAGAATATGGCATTCAGGGGTTGGACGGAGTAACCTTTATC
AAGTCTCTTGGTGCCTTGGCGGGTGGTGGCCAGCAATGCGAAGACGCAGA
CGGATTTCTACTCCGTGAGCAACGCTTTGGAAGTTTGATTGATATTGTGA
CTGCTGGGAACCGCCTCAAGCCCGCTCATTCGTGGCACCAGGACTGCAAC
CTGCCTCAGACAACGGTTATGTTGGGTTTTCCCAAGAGTAATGAGTACAA
GGGCGCGGGCGTCTTTTCCCACGCCATCAAGATATCTCACCAAATAAGGG
ATCAGGTACCAGGGGGCGGGGCGGTTGTCCAATACGATGAGTTCGAAGGA
GTTGGACAGAGCGACGACCTGCCGAACCCTTTGCCAGAATCCGTTATTCT
GCGACCCTGGTACGCGAAAGGTCGCGAAATTATGGTTTATGATGACAGTT
GGCACATTCACTCGGCGCCAGACCATATCCATCGGGCGTCGATTTGGCGC
TTTATGTGATTTGTAAAATGGAAGGAATAGCGGAAGGATTTAAGCAT
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Coding sequence (CDS) from alignment at chr13:741126..742622-

>NO13G02690.1 ID=NO13G02690.1|Name=NO13G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr13:741126..742622- (Nannochloropsis oceanica)
ATGCCCTCTGAGTTTTATCGCGGGGCGTCCAGACATAATGCAGCCACCCT
TGTCCTCTTCCTCCTACTCCTGCTCCTGCACTCCTTGGCCTCCTATAGCG
CATTTATCCCTGAGTCTTCTGTCCGCATTGGTAAGGCTTTCAATAGGATT
ATAATTCCTTCTAGTCGTGCAGTTCCCAGAGCTGGCGAGGATGCTGCCAT
CGATGTGCCCGCGACTCTGTATGTTGAGGACCCGCCCATCTGGCCTGTGC
CAGCCTCGCTTCGACGTGCGGAATCCTTAGGGGGGGGCGAACCCAGCTAT
ATTAGGTTCTTGGGCTTGGCGAAAGTCTTTGAAGCGCGGGATGGGGCCAA
GTTAGCTGAGCTGTTTGATACTGACAGTTTGTTTAGGCATGCCATCCGAG
TAGCAATGCGCGATGACTTATTTGTTCCAGACCCCACTCGTTCAGAGAAG
GTAAATCATTTCCTGAAAGACCTTGGCTCCTCCTTGCACGTCAGCTGGGA
AAAATCGCCCACCCAATACGCCAATCTGTCCCGGGTCTTCAAAGAATATG
GCATTCAGGGGTTGGACGGAGTAACCTTTATCAAGTCTCTTGGTGCCTTG
GCGGGTGGTGGCCAGCAATGCGAAGACGCAGACGGATTTCTACTCCGTGA
GCAACGCTTTGGAAGTTTGATTGATATTGTGACTGCTGGGAACCGCCTCA
AGCCCGCTCATTCGTGGCACCAGGACTGCAACCTGCCTCAGACAACGGTT
ATGTTGGGTTTTCCCAAGAGTAATGAGTACAAGGGCGCGGGCGTCTTTTC
CCACGCCATCAAGATATCTCACCAAATAAGGGATCAGGTACCAGGGGGCG
GGGCGGTTGTCCAATACGATGAGTTCGAAGGAGTTGGACAGAGCGACGAC
CTGCCGAACCCTTTGCCAGAATCCGTTATTCTGCGACCCTGGTACGCGAA
AGGTCGCGAAATTATGGTTTATGATGACAGTTGGCACATTCACTCGGCGC
CAGACCATATCCATCGGGCGTCGATTTGGCGCTTTATGTGA
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Synonyms
Publications