NO13G02570.1, NO13G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02570.1
Unique NameNO13G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2312
Alignment locationchr13:712651..715174 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:712651..715174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02570.1 vs.
Match: XP_005856328.1 (zinc finger family protein [Nannochloropsis gaditana CCMP526]; EKU20031.1 zinc finger family protein [Nannochloropsis gaditana CCMP526]; EWM21910.1 Zinc finger, RING-type [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 1.800e-42
Identity = 101/208 (48.56%), Postives = 128/208 (61.54%), Query Frame = 0 
Query:   93 WACVVTTGILLAGLTFLWLRLRLHRNSSTQNRST------STCSPALVSDCFTWYRQSHTSSSSSPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARLQLMLTTRDFTGDDYEMLSRLDEEDEQQQQLQQQHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            W  +V    L       WLR RL      +          + CS AL  +CF+WYRQS TSS SS  +   R  G +R L GH +AV+E  ALS    + +RLQLML  RDF+ +DYE+LSRLDE+++    L    +G +  EL+RLP Y V++E    +  +KC ICL+DF KG+VVRILPCLHQFHQ+EC DPWLRRKM CPVCK
Sbjct:    2 WILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSGECFSWYRQSRTSSQSS--FITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHL----LGATDAELERLPTYIVDTE----TKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCK 199
The following BLAST results are available for this feature:
BLAST of NO13G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856328.11.800e-4248.56zinc finger family protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02570NO13G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02570.1NO13G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02570.1.cds1NO13G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02570.1.cds2NO13G02570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02570.1 ID=NO13G02570.1|Name=NO13G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2312bp
CTTATGCAGAAGCATGCCTCCTGTAGGTGTGTGTTGATGTGTGTGTTCAG
GGGGGTTAGGCGTCGAAATGCGGACTGCGGAAGGCAACGAAGATGCCAGA
CACACAGGAAACAGTCCACGCAGTGCTCAGCACGTGGTTGCCGCCGTCAT
CTTGTCGTCACGTGGCGGTCACTGGTAGCATCCGCACGTGTTTACCAAGT
ACATGCCGTGTGCGTTGCCGTGCGCAGTAGCGAAATTTGGCGAAGGCGCG
GGAAGAAGACATCAGGCTCGGAACGATTCTCCATTTTTTCAGTTTGGCCT
TTAATTCTTCCTTGACAAGGTCGATTCTGCTACTGCGCATGCTGCCTTTC
CTTTCTAACAAAAATTAAAGTACTACCTCTTTGCTCTCACCACCAATCCC
GGGTTTTCCTGTCTAATTCTCACGGTCTCCTTTCCCCTCTCCTTCGCCCC
CTCTTAAAATTAATACGCGAGCACCCAAAAAACCAAAGGCCACTTTGAAG
GACAAGACCCATCGTGCCCCCGATTCACACAGGCCATTAAGATCCAGCTG
GAAAAACGCGGTATCGAATCACCAATCTACATTGCCATCAGCCAAAATGT
CGGAAGCGGTTCTGAAAAACATTGAAAAAGAATTGCCCAGATTGCAGGCC
GAGCTCGTCAAAATGAAGGAAGCAGCCCCCAAGTCCGAGGCCTTAGTAGA
TCTGATCAACTACATTGTTCAAACACCTGAGCCATTCTATGGCAACGCCC
CCCCCAACAACCCGTGGCTCAAACCTGCCGCCACACCCTGCTGTACTGTA
TCGTAGTTAAATTTTGGTTTTGGGGGAGGGGAGAGAATGGGAAAGATGGA
GGGAAAAAAAGGCAATGGAAACCAATTACCTGGGGCTTGAAAGAAAGAAA
AGAATTGAAATACATTTAGTAAGATTGTTACTCGTGTCATGAGTCTGGGT
GTAAATCGTTGGTGGTTTCGGGCTCAGGGGTAGACGCAGGGCCATGCTTT
AGCAAGCACGTATCCAATCCAAATTTTCCAGGGGCGCTTTCTTAGAGCAA
TACCTTAATTCAGAAAGAAAAAGGATGAAAACTGTGGCGTGCTTGGACTT
GTAAATGGGATTGTTGGCAAGGTGTCGACGACAATGTATGCTGGAGGTAA
TAGTCCGCGAAGGTTGGATACGTGTCATTTTTTTCTCGAGCCCTTTATTT
TCTAACACATCCCCACCCACCACTCAATCCACGGATACCTGCAGGGTGCA
AGGAGCGATGAGCAACGACGTCGATCACACGGTTGTTGTGGTTGAAACCC
CACAGCTGCCCGCCGTCATCCTCGTCCTCGTCCTCTCCTCGGTCCTGTTC
CTGTGTTCGCCTTCCAACTCCAACTGGGCATGGGCTTGCGTGGTGACCAC
GGGTATATTGCTCGCTGGATTGACCTTTCTGTGGTTACGCCTCCGCCTCC
ATCGAAACAGCTCCACCCAAAATCGCAGCACTTCCACATGCTCTCCCGCT
CTGGTCAGTGACTGCTTCACTTGGTACCGACAATCTCACACTTCATCTTC
GTCATCTCCCTCTTATCGCTTACGGAGAAGCGATGGAAATATGCGACATT
TATTTGGACATCATTTGGCAGTACAGGAAGCAGCGGCACTGTCGGGAGGG
ATGATGAACCTGGCTCGCTTACAGCTTATGTTGACTACTCGTGATTTCAC
CGGAGACGACTACGAGATGCTCTCACGGTTAGACGAGGAGGACGAGCAGC
AGCAGCAGCTACAGCAGCAACATATGGGTTGTTCGCAAGAGGAGTTGGAC
CGCTTGCCTGTGTATACGGTGGAGAGTGAATGGAATGGTCATAGTGACAA
TTCCAAGTGTCTGATTTGTTTGAGCGATTTCGCTAAGGGGGATGTGGTGC
GGATTTTGCCTTGTTTGCATCAGTTCCACCAGGCAGAGTGTGTGGACCCA
TGGTTGAGACGAAAGATGCTTTGTCCGGTGTGTAAGATTGCCTTCTAGGC
AGGGTAGGAGGAAGTTGGTTGCCTTCATATGAGGAAGAGGAAGAGGAGGG
AGAGATGAGGAGGAGGATGAGGATGAGGAGAAGGATGATGATGATGATGA
TTAGAAGAAGGGAGAAAAATATTGTACATAGAAAATAGACGCCTTGCATA
TATAACAGCATGTGAAGGGGGGAGAGGAAAGAGATGAGAGCCACAAAAAG
ACCGACACGTTAATATACACTGTTCATTCGCTGTCTTTCCCCCCCCTCCC
CCCACCAGTTTATGTGACATTCTCGTCCATCGGTAAAAGAAACGAAGCAA
AAAGTGTTTGTG
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protein sequence of NO13G02570.1

>NO13G02570.1-protein ID=NO13G02570.1-protein|Name=NO13G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MGLLARCRRQCMLEVIVREGWIRVIFFSSPLFSNTSPPTTQSTDTCRVQG
AMSNDVDHTVVVVETPQLPAVILVLVLSSVLFLCSPSNSNWAWACVVTTG
ILLAGLTFLWLRLRLHRNSSTQNRSTSTCSPALVSDCFTWYRQSHTSSSS
SPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARLQLMLTTRDFTG
DDYEMLSRLDEEDEQQQQLQQQHMGCSQEELDRLPVYTVESEWNGHSDNS
KCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCKIAF*
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mRNA from alignment at chr13:712651..715174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02570.1 ID=NO13G02570.1|Name=NO13G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2524bp|location=Sequence derived from alignment at chr13:712651..715174- (Nannochloropsis oceanica)
CTTATGCAGAAGCATGCCTCCTGTAGGTGTGTGTTGATGTGTGTGTTCAG
GGGGGTTAGGCGTCGAAATGCGGACTGCGGAAGGCAACGAAGATGCCAGA
CACACAGGAAACAGTCCACGCAGTGCTCAGCACGTGGTTGCCGCCGTCAT
CTTGTCGTCACGTGGCGGTCACTGGTAGCATCCGCACGTGTTTACCAAGT
ACATGCCGTGTGCGTTGCCGTGCGCAGTAGCGAAATTTGGCGAAGGCGCG
GGAAGAAGACATCAGGCTCGGAACGATTCTCCATTTTTTCAGTTTGGCCT
TTAATTCTTCCTTGACAAGGTCGATTCTGCTACTGCGCATGCTGCCTTTC
CTTTCTAACAAAAATTAAAGTACTACCTCTTTGCTCTCACCACCAATCCC
GGGTTTTCCTGTCTAATTCTCACGGTCTCCTTTCCCCTCTCCTTCGCCCC
CTCTTAAAATTAATACGCGAGCACCCAAAAAACCAAAGGCCACTTTGAAG
GACAAGACCCATCGTGCCCCCGATTCACACAGGCCATTAAGATCCAGCTG
GAAAAACGCGGTATCGAATCACCAATCTACATTGCCATCAGCCAAAATGT
CGGAAGCGGTTCTGAAAAACATTGAAAAAGAATTGCCCAGATTGCAGGCC
GAGCTCGTCAAAATGAAGGAAGCAGCCCCCAAGTCCGAGGCCTTAGTAGA
TCTGATCAACTACATTGTTCAAACACCTGAGCCATTCTATGGCAACGCCC
CCCCCAACAACCCGTGGCTCAAACCTGCCGCCACACCCTGCTGTACTGTA
TCGTAGTTAAATTTTGGTTTTGGGGGAGGGGAGAGAATGGGAAAGATGGA
GGGAAAAAAAGGCAATGGAAACCAATTACCTGGGGCTTGAAAGAAAGAAA
AGAATTGAAATACATTTAGTAAGATTGTTACTCGTGTCATGAGTCTGGGT
GTAAATCGTTGGTGGTTTCGGGCTCAGGGGTAGACGCAGGGCCATGCTTT
AGCAAGCACGTATCCAATCCAAATTTTCCAGGGGCGCTTTCTTAGAGCAA
TACCTTAATTCAGAAAGAAAAAGGATGAAAACTGTGGCGTGCTTGGACTT
GTAAATGGGATTGTTGGCAAGGTGTCGACGACAATGTATGCTGGAGGTAA
TAGTCCGCGAAGGTTGGATACGTGTCATTTTTTTCTCGAGCCCTTTATTT
TCTAACACATCCCCACCCACCACTCAATCCACGGATACCTGCAGGGTGCA
AGGAGCGATGAGCAACGACGTCGATCACACGGTTGTTGTGGTTGAAACCC
CACAGCTGCCCGCCGTCATCCTCGTCCTCGTCCTCTCCTCGGTCCTGTTC
CTGTGTTCGGTAAGCGATGAATGAAGTGCAGGAGTGGACATTCTGTCTTG
TGTATGTGTGGTTGTACATGCCAAGACGGGGGAAGCCTGACGTAGCCTCT
AGAGATAATATCAGTGGCTCTCCAACGCCCTACATTTTCATCTTTTCCTG
GCTATCATCCCGCGTCCTCCTCAAGCTCGTACACTCATTCTTGAACCCTG
CGCAACACAACACATTCACAGCCTTCCAACTCCAACTGGGCATGGGCTTG
CGTGGTGACCACGGGTATATTGCTCGCTGGATTGACCTTTCTGTGGTTAC
GCCTCCGCCTCCATCGAAACAGCTCCACCCAAAATCGCAGCACTTCCACA
TGCTCTCCCGCTCTGGTCAGTGACTGCTTCACTTGGTACCGACAATCTCA
CACTTCATCTTCGTCATCTCCCTCTTATCGCTTACGGAGAAGCGATGGAA
ATATGCGACATTTATTTGGACATCATTTGGCAGTACAGGAAGCAGCGGCA
CTGTCGGGAGGGATGATGAACCTGGCTCGCTTACAGCTTATGTTGACTAC
TCGTGATTTCACCGGAGACGACTACGAGATGCTCTCACGGTTAGACGAGG
AGGACGAGCAGCAGCAGCAGCTACAGCAGCAACATATGGGTTGTTCGCAA
GAGGAGTTGGACCGCTTGCCTGTGTATACGGTGGAGAGTGAATGGAATGG
TCATAGTGACAATTCCAAGTGTCTGATTTGTTTGAGCGATTTCGCTAAGG
GGGATGTGGTGCGGATTTTGCCTTGTTTGCATCAGTTCCACCAGGCAGAG
TGTGTGGACCCATGGTTGAGACGAAAGATGCTTTGTCCGGTGTGTAAGAT
TGCCTTCTAGGCAGGGTAGGAGGAAGTTGGTTGCCTTCATATGAGGAAGA
GGAAGAGGAGGGAGAGATGAGGAGGAGGATGAGGATGAGGAGAAGGATGA
TGATGATGATGATTAGAAGAAGGGAGAAAAATATTGTACATAGAAAATAG
ACGCCTTGCATATATAACAGCATGTGAAGGGGGGAGAGGAAAGAGATGAG
AGCCACAAAAAGACCGACACGTTAATATACACTGTTCATTCGCTGTCTTT
CCCCCCCCTCCCCCCACCAGTTTATGTGACATTCTCGTCCATCGGTAAAA
GAAACGAAGCAAAAAGTGTTTGTG
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Coding sequence (CDS) from alignment at chr13:712651..715174-

>NO13G02570.1 ID=NO13G02570.1|Name=NO13G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr13:712651..715174- (Nannochloropsis oceanica)
ATGGGATTGTTGGCAAGGTGTCGACGACAATGTATGCTGGAGGTAATAGT
CCGCGAAGGTTGGATACGTGTCATTTTTTTCTCGAGCCCTTTATTTTCTA
ACACATCCCCACCCACCACTCAATCCACGGATACCTGCAGGGTGCAAGGA
GCGATGAGCAACGACGTCGATCACACGGTTGTTGTGGTTGAAACCCCACA
GCTGCCCGCCGTCATCCTCGTCCTCGTCCTCTCCTCGGTCCTGTTCCTGT
GTTCGCCTTCCAACTCCAACTGGGCATGGGCTTGCGTGGTGACCACGGGT
ATATTGCTCGCTGGATTGACCTTTCTGTGGTTACGCCTCCGCCTCCATCG
AAACAGCTCCACCCAAAATCGCAGCACTTCCACATGCTCTCCCGCTCTGG
TCAGTGACTGCTTCACTTGGTACCGACAATCTCACACTTCATCTTCGTCA
TCTCCCTCTTATCGCTTACGGAGAAGCGATGGAAATATGCGACATTTATT
TGGACATCATTTGGCAGTACAGGAAGCAGCGGCACTGTCGGGAGGGATGA
TGAACCTGGCTCGCTTACAGCTTATGTTGACTACTCGTGATTTCACCGGA
GACGACTACGAGATGCTCTCACGGTTAGACGAGGAGGACGAGCAGCAGCA
GCAGCTACAGCAGCAACATATGGGTTGTTCGCAAGAGGAGTTGGACCGCT
TGCCTGTGTATACGGTGGAGAGTGAATGGAATGGTCATAGTGACAATTCC
AAGTGTCTGATTTGTTTGAGCGATTTCGCTAAGGGGGATGTGGTGCGGAT
TTTGCCTTGTTTGCATCAGTTCCACCAGGCAGAGTGTGTGGACCCATGGT
TGAGACGAAAGATGCTTTGTCCGGTGTGTAAGATTGCCTTCTAG
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Synonyms
Publications