NO13G02550.2, NO13G02550.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02550.2
Unique NameNO13G02550.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1517
Alignment locationchr13:708606..710815 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:708606..710815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02550.2 vs.
Match: EWM21904.1 (uncharacterized protein Naga_100070g13 [Nannochloropsis gaditana])

HSP 1 Score: 260.0 bits (663), Expect = 9.300e-66
Identity = 158/258 (61.24%), Postives = 190/258 (73.64%), Query Frame = 0 
Query:    1 MAFRKNICCLALLATLAICASARRPSAATGFVLPTASHAS------LWTKSAMRPSASYLRVAETQEQEKQQ-PLY--PRNTKSSRRSSNLIPVPTQNLGPQSGGMEKKLGDSLIKGFKKASAVGLAVVLSGIILVGSMPVVSHAASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250
            M+FRK     ++LA + +C S R  SA  GFV     H +      + T+  +R SA  L+ +E+ E+E Q  PLY       ++  +S  + + T++   + G +E+ LG  ++KGFKK  AVGLAV L+GI+L+  MP+ +HAASASLA+LTAGAS SYN+VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQ FHAIP GL GGFKFDQWVAV AFSYFGLKTLK
Sbjct:    1 MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLK 258
The following BLAST results are available for this feature:
BLAST of NO13G02550.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21904.19.300e-6661.24uncharacterized protein Naga_100070g13 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02550NO13G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02550.2NO13G02550.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02550.2.cds1NO13G02550.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02550.2.cds2NO13G02550.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02550.2.cds3NO13G02550.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02550.2.cds4NO13G02550.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02550.2.cds5NO13G02550.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02550.2.cds6NO13G02550.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02550.2 ID=NO13G02550.2|Name=NO13G02550.2|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp
ACAGGCATTTGGACGTTACCATGGCATTTCGTAAGAATATCTGTTGCCTC
GCCCTCCTTGCCACGCTTGCTATTTGTGCCAGTGCGCGAAGACCAAGCGC
AGCAACGGGTTTTGTCCTTCCTACCGCCAGCCACGCCTCTCTATGGACTA
AATCTGCCATGCGTCCTTCTGCATCCTACTTGCGGGTAGCCGAGACGCAG
GAACAGGAGAAGCAGCAACCACTCTACCCAAGGAATACCAAGAGCAGCAG
ACGCAGCAGCAATTTGATCCCCGTCCCAACTCAAAATCTTGGCCCCCAAA
GTGGAGGCATGGAGAAAAAATTGGGGGACTCACTTATTAAGGGATTCAAG
AAGGCTAGCGCCGTGGGCCTGGCTGTGGTGCTAAGCGGCATCATCTTAGT
GGGGAGCATGCCGGTGGTCTCCCATGCTGCCTCCGCCTCACTAGCGGAAT
TAACGGCCGGCGCTTCCTCCTCCTATAACAGCGTGGTGGCCAAGCTGGCT
GCCTCGGGGTTCTTGCAGGCCTTCTCCCTGGTGTTCGTCTCCGAGATTGG
GGACAAGACCTTTTTCATCGCCGGTTTGTTGGCCATGAAGACGTCGAGGC
TCATTTCTTTCACCGGCTCGATGGCTGCGTTGTCAGTGATGACCATTATC
TCAGTTTTGATCGGCCAGGTGTTCCACGCTATCCCGTCGGGCCTGGCGGG
CGGTTTCAAATTTGACCAGTGGGTTGCTGTCCTAGCTTTTTCGTACTTTG
GACTTAAGACGCTCAAGGTAGGCAGGATAGGATGCATGCGAGTCTTCTCT
TGGTCATTCCACCATAATTTCTTGCTCTTTGTGGCCGCTTCCCCCCCCGA
AAAAAGCTTTATACCACTCTTCTTGTTTCCCCATTCCTCTTTCATCTTCC
CTCTTTCTGCCACGTCAGGATTCGTACGAAATGGCGGACGGTGACTCTTC
TGGCATGGACGAAGAGCGGTCCGAGGCCGAGAAGGCCGTCGAGGAGTCCA
GCGCCCCGGAGCAGAGGACCCCCTGGGGCACCATCCTCCAAATTTTCTCC
CTTGTTTTCGCTGCTGAATTTGGTGACCGTTCGTTTTTGTCAACGATTGC
CTTGGGTGCTGCCCAGAACCCTTTTTCTGTGGCCACAGGGGCGATTGGAG
CGCATGCGACAGCTACGGGGATTGCAGTAGTCAGCGGGGCGTTCCTATCA
AAGTACTTTTCTGAAAAGGTTATTGGCTTTGTCGGTGGCTCACTTTTTGT
CATTTTTGCCGTGACCACCGCTTTGGGCATTTTCTAAAGTTCACTTGCTA
AGTTGAAGGGATAGGAGAGTGTCGGCGGGGGGAGGTCAAGGGAGGAAGAC
GTGAGGCGTGGCGAGAAGCCAGATGCCAAAACTACAACAAATCTGATGCA
CAACTGACTGTAACAACGCGTTATGTCTATGCGCACACGCAACACAAAAG
AATTTGAACACAATTAACACATTACGCTGATTAGGTGCCTTGTTTCTGCC
TCCGCTTTCTCGCTTCC
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protein sequence of NO13G02550.2

>NO13G02550.2-protein ID=NO13G02550.2-protein|Name=NO13G02550.2|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MAFRKNICCLALLATLAICASARRPSAATGFVLPTASHASLWTKSAMRPS
ASYLRVAETQEQEKQQPLYPRNTKSSRRSSNLIPVPTQNLGPQSGGMEKK
LGDSLIKGFKKASAVGLAVVLSGIILVGSMPVVSHAASASLAELTAGASS
SYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGS
MAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLKV
GRIGCMRVFSWSFHHNFLLFVAASPPEKSFIPLFLFPHSSFIFPLSATSG
FVRNGGR*
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mRNA from alignment at chr13:708606..710815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02550.2 ID=NO13G02550.2|Name=NO13G02550.2|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp|location=Sequence derived from alignment at chr13:708606..710815- (Nannochloropsis oceanica)
ACAGGCATTTGGACGTTACCATGGCATTTCGTAAGAATATCTGTTGCCTC
GCCCTCCTTGCCACGCTTGCTATTTGTGCCAGGTAAGTGGATGCGAATGG
GGTCACTCGGGCCATGCCCGCCTCCTTGTGACTAAGCACGATTCTCTTTA
CTTCATTGAGCGCTTACTTACTGCAATTACACACCTCCTTTTCCTTCAGT
GCGCGAAGACCAAGCGCAGCAACGGGTTTTGTCCTTCCTACCGCCAGCCA
CGCCTCTCTATGTAAGTTTCTCTGTGTGCTTTTCCCCAGCTAAAACGATC
CTGGGGGATCGAGGACGATTTATAGCTCCCTTTCCCCTCCCCTACATTTA
CCACCATTGCCACATTCAACCCCACGTGATCCTAACAGGGACTAAATCTG
CCATGCGTCCTTCTGCATCCTACTTGCGGGTAGCCGAGGTGAGTTCTTGT
GTATTCCCTGCGATCGGATGGTGGGAGGAGATCTGCGACCAATGCTAGCG
AGAAGGGAATATTCTTGGGGCAAGCACAAAACAAGCAAGCCGCTCCCGCT
CCATGTCACATATCACATATAGGGTAGAGAATTTTCTACTTGCCGCGCCA
CTCACTTTGTCGTTTTCCCCTTCTATGAACAGACGCAGGAACAGGAGAAG
CAGCAACCACTCTACCCAAGGAATACCAAGAGCAGCAGACGCAGCAGCAA
TTTGATCCCCGTCCCAACTCAAAATCTTGGCCCCCAAAGTGGAGGCATGG
AGAAAAAATTGGGGGACTCACTTATTAAGGGAGTAAGTTTATGTCTGCTG
GGAGAAATATATCAAAACATAAACATAAGTAGAAGACGAACGGGTTGGGG
GTGTGCAACCGAGATGAGACCAATGAGCCACATGCACCCTAACATGGGCC
CTTCTATCTCTTTCTCCCCTCTCCTTTCGAATTATAGTTCAAGAAGGCTA
GCGCCGTGGGCCTGGCTGTGGTGCTAAGCGGCATCATCTTAGTGGGGAGC
ATGCCGGTGGTCTCCCATGCTGCCTCCGCCTCACTAGCGGAATTAACGGC
CGGCGCTTCCTCCTCCTATAACAGCGTGGTGGCCAAGCTGGCTGCCTCGG
GGTTCTTGCAGGTAATTAGTAGTACTTAAGAGGCTGTAGAAACGTGGACT
GTGAGGAAATTTAGGGCAAGAATAACCCTCTTTCATTCCCTCCCCTCCCC
TCCCCCCCCAGGCCTTCTCCCTGGTGTTCGTCTCCGAGATTGGGGACAAG
ACCTTTTTCATCGCCGGTTTGTTGGCCATGAAGACGTCGAGGCTCATTTC
TTTCACCGGCTCGATGGCTGCGTTGTCAGTGATGACCATTATCTCAGTTT
TGATCGGCCAGGTGTTCCACGCTATCCCGTCGGGCCTGGCGGGCGGTTTC
AAATTTGACCAGTGGGTTGCTGTCCTAGCTTTTTCGTACTTTGGACTTAA
GACGCTCAAGGTAGGCAGGATAGGATGCATGCGAGTCTTCTCTTGGTCAT
TCCACCATAATTTCTTGCTCTTTGTGGCCGCTTCCCCCCCCGAAAAAAGC
TTTATACCACTCTTCTTGTTTCCCCATTCCTCTTTCATCTTCCCTCTTTC
TGCCACGTCAGGATTCGTACGAAATGGCGGACGGTGACTCTTCTGGCATG
GACGAAGAGCGGTCCGAGGCCGAGAAGGCCGTCGAGGAGTCCAGCGCCCC
GGAGCAGAGGACCCCCTGGGGCACCATCCTCCAAATTTTCTCCCTTGTTT
TCGCTGCTGAATTTGGTGACCGTTCGTTTTTGTCAACGATTGCCTTGGGT
GCTGCCCAGAACCCTTTTTCTGTGGCCACAGGGGCGATTGGAGCGCATGC
GACAGCTACGGGGATTGCAGTAGTCAGCGGGGCGTTCCTATCAAAGTACT
TTTCTGAAAAGGTTATTGGCTTTGTCGGTGGCTCACTTTTTGTCATTTTT
GCCGTGACCACCGCTTTGGGCATTTTCTAAAGTTCACTTGCTAAGTTGAA
GGGATAGGAGAGTGTCGGCGGGGGGAGGTCAAGGGAGGAAGACGTGAGGC
GTGGCGAGAAGCCAGATGCCAAAACTACAACAAATCTGATGCACAACTGA
CTGTAACAACGCGTTATGTCTATGCGCACACGCAACACAAAAGAATTTGA
ACACAATTAACACATTACGCTGATTAGGTGCCTTGTTTCTGCCTCCGCTT
TCTCGCTTCC
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Coding sequence (CDS) from alignment at chr13:708606..710815-

>NO13G02550.2 ID=NO13G02550.2|Name=NO13G02550.2|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr13:708606..710815- (Nannochloropsis oceanica)
ATGGCATTTCGTAAGAATATCTGTTGCCTCGCCCTCCTTGCCACGCTTGC
TATTTGTGCCAGTGCGCGAAGACCAAGCGCAGCAACGGGTTTTGTCCTTC
CTACCGCCAGCCACGCCTCTCTATGGACTAAATCTGCCATGCGTCCTTCT
GCATCCTACTTGCGGGTAGCCGAGACGCAGGAACAGGAGAAGCAGCAACC
ACTCTACCCAAGGAATACCAAGAGCAGCAGACGCAGCAGCAATTTGATCC
CCGTCCCAACTCAAAATCTTGGCCCCCAAAGTGGAGGCATGGAGAAAAAA
TTGGGGGACTCACTTATTAAGGGATTCAAGAAGGCTAGCGCCGTGGGCCT
GGCTGTGGTGCTAAGCGGCATCATCTTAGTGGGGAGCATGCCGGTGGTCT
CCCATGCTGCCTCCGCCTCACTAGCGGAATTAACGGCCGGCGCTTCCTCC
TCCTATAACAGCGTGGTGGCCAAGCTGGCTGCCTCGGGGTTCTTGCAGGC
CTTCTCCCTGGTGTTCGTCTCCGAGATTGGGGACAAGACCTTTTTCATCG
CCGGTTTGTTGGCCATGAAGACGTCGAGGCTCATTTCTTTCACCGGCTCG
ATGGCTGCGTTGTCAGTGATGACCATTATCTCAGTTTTGATCGGCCAGGT
GTTCCACGCTATCCCGTCGGGCCTGGCGGGCGGTTTCAAATTTGACCAGT
GGGTTGCTGTCCTAGCTTTTTCGTACTTTGGACTTAAGACGCTCAAGGTA
GGCAGGATAGGATGCATGCGAGTCTTCTCTTGGTCATTCCACCATAATTT
CTTGCTCTTTGTGGCCGCTTCCCCCCCCGAAAAAAGCTTTATACCACTCT
TCTTGTTTCCCCATTCCTCTTTCATCTTCCCTCTTTCTGCCACGTCAGGA
TTCGTACGAAATGGCGGACGGTGA
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Synonyms
Publications