NO13G02300.1, NO13G02300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02300.1
Unique NameNO13G02300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length723
Alignment locationchr13:638862..639656 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:638862..639656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02300.1 vs.
Match: XP_005854628.1 (nudix hydrolase [Nannochloropsis gaditana CCMP526]; XP_005856326.1 nudix hydrolase [Nannochloropsis gaditana CCMP526]; EKU20029.1 nudix hydrolase [Nannochloropsis gaditana CCMP526]; EKU21732.1 nudix hydrolase [Nannochloropsis gaditana CCMP526]; EWM21893.1 nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 291.2 bits (744), Expect = 3.000e-75
Identity = 142/221 (64.25%), Postives = 175/221 (79.19%), Query Frame = 0 
Query:   23 SRGLKSAACLCLAASYSFSPVWLHLPATS---SSALRMSTGGSFCYRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEAWPRLIVCESGGKTVVKERGSAKVLCVLPDAKSVELVRSATPFS 241
            SR L SAACLC  A  SF    +  P++S   S+A+ M+  G FCY+YPRPSVTVDTL+FC +   +K+LL++RGN+PFKG WALPGGFVD+DEGLD AAAREL+EET LD+ISFAQVG++G PGRDPRGHT+TVAY AFLLSS+G +AGDDA  A FF FG LPPLAFDH+ II+E W RL+VC+  G TVVKERG+ +VLC LP A + ++VRS+ PF+
Sbjct:    9 SRTLISAACLCFTAPSSF----VLRPSSSRPASTAVGMAAQG-FCYKYPRPSVTVDTLVFCLDETQMKILLVQRGNEPFKGAWALPGGFVDQDEGLDSAAARELREETALDSISFAQVGTYGQPGRDPRGHTITVAYTAFLLSSEGARAGDDAREAKFFAFGSLPPLAFDHKKIIEETWMRLVVCDKEGTTVVKERGAQQVLCRLPTASAAQVVRSSKPFT 224
The following BLAST results are available for this feature:
BLAST of NO13G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854628.13.000e-7564.25nudix hydrolase [Nannochloropsis gaditana CCMP526]... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02300NO13G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02300.1NO13G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02300.1.cds1NO13G02300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02300.1.cds2NO13G02300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02300.1 ID=NO13G02300.1|Name=NO13G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
ATGAGTCATGGAGGCCAGGCATTTCCCTGCTGCTGCATGCTTCTGTCAGT
GTCCTACACATTCTTCAGCCGCGGCCTCAAATCTGCTGCCTGCTTGTGCC
TCGCTGCGTCGTACTCTTTCTCTCCTGTTTGGCTCCACCTTCCTGCTACT
TCCTCGTCGGCCTTGAGAATGAGCACCGGTGGCAGCTTTTGTTACAGGTA
CCCTCGACCATCCGTCACTGTAGACACTCTAATTTTTTGTGCGGAGAATA
ATGATGTCAAGCTCTTGCTTATCAAGCGTGGTAATGACCCATTCAAAGGT
ACATGGGCATTGCCGGGTGGTTTCGTTGACAAGGACGAGGGCTTGGACGA
CGCAGCGGCCCGTGAGCTCAAGGAAGAAACAGGGCTTGACAATATTTCAT
TCGCACAAGTCGGGAGCTTTGGTGACCCCGGCCGAGATCCGCGAGGGCAC
ACAGTCACCGTTGCTTACGCTGCCTTTTTGCTTTCGTCGAAGGGCACAAA
AGCAGGCGACGATGCGAGTGCCGCGGCCTTCTTCCCCTTCGGCCAACTTC
CTCCACTTGCCTTCGACCATCGAACAATCATTCAAGAGGCGTGGCCGAGA
TTAATAGTATGTGAGAGCGGGGGCAAGACCGTTGTGAAGGAGCGTGGATC
GGCGAAAGTGCTGTGTGTGTTGCCAGACGCCAAGTCGGTGGAACTCGTCC
GCAGCGCCACACCCTTCTCATAG
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protein sequence of NO13G02300.1

>NO13G02300.1-protein ID=NO13G02300.1-protein|Name=NO13G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSHGGQAFPCCCMLLSVSYTFFSRGLKSAACLCLAASYSFSPVWLHLPAT
SSSALRMSTGGSFCYRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKG
TWALPGGFVDKDEGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGH
TVTVAYAAFLLSSKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEAWPR
LIVCESGGKTVVKERGSAKVLCVLPDAKSVELVRSATPFS*
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mRNA from alignment at chr13:638862..639656+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02300.1 ID=NO13G02300.1|Name=NO13G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=795bp|location=Sequence derived from alignment at chr13:638862..639656+ (Nannochloropsis oceanica)
ATGAGTCATGGAGGGTAAGGTCTTGGTATGTCTTAAACGGGCGATAACTG
CAGGACTTCATCTCACGCAACCCACACACAACACAGCCAGGCATTTCCCT
GCTGCTGCATGCTTCTGTCAGTGTCCTACACATTCTTCAGCCGCGGCCTC
AAATCTGCTGCCTGCTTGTGCCTCGCTGCGTCGTACTCTTTCTCTCCTGT
TTGGCTCCACCTTCCTGCTACTTCCTCGTCGGCCTTGAGAATGAGCACCG
GTGGCAGCTTTTGTTACAGGTACCCTCGACCATCCGTCACTGTAGACACT
CTAATTTTTTGTGCGGAGAATAATGATGTCAAGCTCTTGCTTATCAAGCG
TGGTAATGACCCATTCAAAGGTACATGGGCATTGCCGGGTGGTTTCGTTG
ACAAGGACGAGGGCTTGGACGACGCAGCGGCCCGTGAGCTCAAGGAAGAA
ACAGGGCTTGACAATATTTCATTCGCACAAGTCGGGAGCTTTGGTGACCC
CGGCCGAGATCCGCGAGGGCACACAGTCACCGTTGCTTACGCTGCCTTTT
TGCTTTCGTCGAAGGGCACAAAAGCAGGCGACGATGCGAGTGCCGCGGCC
TTCTTCCCCTTCGGCCAACTTCCTCCACTTGCCTTCGACCATCGAACAAT
CATTCAAGAGGCGTGGCCGAGATTAATAGTATGTGAGAGCGGGGGCAAGA
CCGTTGTGAAGGAGCGTGGATCGGCGAAAGTGCTGTGTGTGTTGCCAGAC
GCCAAGTCGGTGGAACTCGTCCGCAGCGCCACACCCTTCTCATAG
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Coding sequence (CDS) from alignment at chr13:638862..639656+

>NO13G02300.1 ID=NO13G02300.1|Name=NO13G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr13:638862..639656+ (Nannochloropsis oceanica)
ATGAGTCATGGAGGCCAGGCATTTCCCTGCTGCTGCATGCTTCTGTCAGT
GTCCTACACATTCTTCAGCCGCGGCCTCAAATCTGCTGCCTGCTTGTGCC
TCGCTGCGTCGTACTCTTTCTCTCCTGTTTGGCTCCACCTTCCTGCTACT
TCCTCGTCGGCCTTGAGAATGAGCACCGGTGGCAGCTTTTGTTACAGGTA
CCCTCGACCATCCGTCACTGTAGACACTCTAATTTTTTGTGCGGAGAATA
ATGATGTCAAGCTCTTGCTTATCAAGCGTGGTAATGACCCATTCAAAGGT
ACATGGGCATTGCCGGGTGGTTTCGTTGACAAGGACGAGGGCTTGGACGA
CGCAGCGGCCCGTGAGCTCAAGGAAGAAACAGGGCTTGACAATATTTCAT
TCGCACAAGTCGGGAGCTTTGGTGACCCCGGCCGAGATCCGCGAGGGCAC
ACAGTCACCGTTGCTTACGCTGCCTTTTTGCTTTCGTCGAAGGGCACAAA
AGCAGGCGACGATGCGAGTGCCGCGGCCTTCTTCCCCTTCGGCCAACTTC
CTCCACTTGCCTTCGACCATCGAACAATCATTCAAGAGGCGTGGCCGAGA
TTAATAGTATGTGAGAGCGGGGGCAAGACCGTTGTGAAGGAGCGTGGATC
GGCGAAAGTGCTGTGTGTGTTGCCAGACGCCAAGTCGGTGGAACTCGTCC
GCAGCGCCACACCCTTCTCATAG
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Synonyms
Publications