NO13G01710.1, NO13G01710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01710.1
Unique NameNO13G01710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length913
Alignment locationchr13:505898..506810 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:505898..506810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01710.1 vs.
Match: EWM21836.1 (inosine triphosphate pyrophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 354.4 bits (908), Expect = 3.300e-94
Identity = 187/260 (71.92%), Postives = 209/260 (80.38%), Query Frame = 0 
Query:    4 ALLILILLSCANIAAFVPVSTSTTTLLSSRSRRLLSLCLYQCSMTT----MSSS-----TKPSLTFVTGNAKKLEEVRAILIAGTETGKELPFEIISEKLDLPELQGEPEDVAREKCLLAVKETKGPTIVEDTCLCFNALGGLPGVYIKWFLEKLGHEGLNNLLVAYEDKTAYALCTFAYCPGPGQEVLIFDGRTPGKIVPARGPHAFGWDPVFEPFVGQPEGGLPLQTYAEMDKDVKNTISHRYRALAKLRDFLMTQNG 255
            + L+LIL   +   AFVP   ST TL S R     S  L + S T     M+SS      KP+LTFVTGNAKKLEEVRAIL A  +TG  LPF+++S+K+DLPELQGEPEDVAREKCLLAVKE KGPT+VEDT LCFNALGGLPGVYIKWFLEKLGHEGLNNLL AYEDK+AYALCTFAYCPG GQEVL+FDGRTPGKIVPARGPHAFGWDPVFEP  GQ  G  P +TYAEMDKD+KN+ISHRYRA+AKLRDFL++ +G
Sbjct:    6 SFLLLILGLSSAAGAFVP-PVSTITLRSGRLLLSTSSPLRRVSRTIRGFKMASSGNNGCPKPTLTFVTGNAKKLEEVRAILGADAKTGAVLPFDVVSQKIDLPELQGEPEDVAREKCLLAVKEVKGPTMVEDTALCFNALGGLPGVYIKWFLEKLGHEGLNNLLAAYEDKSAYALCTFAYCPGVGQEVLVFDGRTPGKIVPARGPHAFGWDPVFEPADGQSGGSEPPKTYAEMDKDMKNSISHRYRAVAKLRDFLLSPSG 264
The following BLAST results are available for this feature:
BLAST of NO13G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21836.13.300e-9471.92inosine triphosphate pyrophosphatase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01710NO13G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01710.1NO13G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01710.1.cds1NO13G01710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01710.1 ID=NO13G01710.1|Name=NO13G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=913bp
ACAGGCCTGTCTGCATGCATCCGGCGCTGTTGATCCTGATCTTGCTATCC
TGTGCGAACATTGCTGCATTTGTCCCCGTTTCTACGAGCACAACGACGCT
TCTCTCTTCCCGATCACGCCGCCTCCTCTCACTCTGCTTGTATCAGTGCT
CAATGACCACAATGTCCTCCTCTACAAAGCCGTCTTTGACTTTCGTGACC
GGCAACGCCAAGAAGCTCGAGGAAGTGCGGGCCATTCTGATTGCAGGGAC
AGAGACTGGCAAGGAGCTACCCTTCGAAATCATCTCCGAAAAGCTTGATC
TGCCGGAATTGCAAGGTGAGCCTGAAGACGTGGCAAGGGAGAAATGCTTG
CTGGCCGTAAAGGAGACGAAGGGACCGACGATTGTCGAAGACACGTGCTT
GTGTTTTAATGCCTTGGGCGGGCTTCCGGGCGTGTATATCAAGTGGTTCT
TGGAAAAGCTGGGACATGAGGGACTTAATAACCTCCTGGTTGCTTACGAA
GATAAGACCGCGTATGCCTTGTGTACATTTGCTTACTGCCCTGGACCAGG
ACAAGAAGTTTTGATCTTTGATGGGCGAACCCCGGGAAAGATTGTGCCGG
CCCGGGGGCCGCATGCGTTTGGGTGGGACCCTGTGTTTGAGCCTTTCGTG
GGTCAGCCGGAGGGGGGTTTACCGTTGCAGACATATGCCGAAATGGACAA
GGATGTGAAGAACACGATCTCACATCGGTACCGGGCGTTGGCGAAGTTGA
GAGATTTTTTGATGACTCAGAATGGAAATGGAGGAGGAAGAAGACATGGA
GAAGGGCAGGAGGAAGGGGATGGGAAGGCGAAGGAGACTTGATTGTTGAG
AGAGCCGAAGTGAAAACGATTTACTGACTTATTGAAAAGAAATAGAGTGT
ACATTGCGAATCA
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protein sequence of NO13G01710.1

>NO13G01710.1-protein ID=NO13G01710.1-protein|Name=NO13G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MHPALLILILLSCANIAAFVPVSTSTTTLLSSRSRRLLSLCLYQCSMTTM
SSSTKPSLTFVTGNAKKLEEVRAILIAGTETGKELPFEIISEKLDLPELQ
GEPEDVAREKCLLAVKETKGPTIVEDTCLCFNALGGLPGVYIKWFLEKLG
HEGLNNLLVAYEDKTAYALCTFAYCPGPGQEVLIFDGRTPGKIVPARGPH
AFGWDPVFEPFVGQPEGGLPLQTYAEMDKDVKNTISHRYRALAKLRDFLM
TQNGNGGGRRHGEGQEEGDGKAKET*
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mRNA from alignment at chr13:505898..506810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01710.1 ID=NO13G01710.1|Name=NO13G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=913bp|location=Sequence derived from alignment at chr13:505898..506810+ (Nannochloropsis oceanica)
ACAGGCCTGTCTGCATGCATCCGGCGCTGTTGATCCTGATCTTGCTATCC
TGTGCGAACATTGCTGCATTTGTCCCCGTTTCTACGAGCACAACGACGCT
TCTCTCTTCCCGATCACGCCGCCTCCTCTCACTCTGCTTGTATCAGTGCT
CAATGACCACAATGTCCTCCTCTACAAAGCCGTCTTTGACTTTCGTGACC
GGCAACGCCAAGAAGCTCGAGGAAGTGCGGGCCATTCTGATTGCAGGGAC
AGAGACTGGCAAGGAGCTACCCTTCGAAATCATCTCCGAAAAGCTTGATC
TGCCGGAATTGCAAGGTGAGCCTGAAGACGTGGCAAGGGAGAAATGCTTG
CTGGCCGTAAAGGAGACGAAGGGACCGACGATTGTCGAAGACACGTGCTT
GTGTTTTAATGCCTTGGGCGGGCTTCCGGGCGTGTATATCAAGTGGTTCT
TGGAAAAGCTGGGACATGAGGGACTTAATAACCTCCTGGTTGCTTACGAA
GATAAGACCGCGTATGCCTTGTGTACATTTGCTTACTGCCCTGGACCAGG
ACAAGAAGTTTTGATCTTTGATGGGCGAACCCCGGGAAAGATTGTGCCGG
CCCGGGGGCCGCATGCGTTTGGGTGGGACCCTGTGTTTGAGCCTTTCGTG
GGTCAGCCGGAGGGGGGTTTACCGTTGCAGACATATGCCGAAATGGACAA
GGATGTGAAGAACACGATCTCACATCGGTACCGGGCGTTGGCGAAGTTGA
GAGATTTTTTGATGACTCAGAATGGAAATGGAGGAGGAAGAAGACATGGA
GAAGGGCAGGAGGAAGGGGATGGGAAGGCGAAGGAGACTTGATTGTTGAG
AGAGCCGAAGTGAAAACGATTTACTGACTTATTGAAAAGAAATAGAGTGT
ACATTGCGAATCA
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Coding sequence (CDS) from alignment at chr13:505898..506810+

>NO13G01710.1 ID=NO13G01710.1|Name=NO13G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr13:505898..506810+ (Nannochloropsis oceanica)
ATGCATCCGGCGCTGTTGATCCTGATCTTGCTATCCTGTGCGAACATTGC
TGCATTTGTCCCCGTTTCTACGAGCACAACGACGCTTCTCTCTTCCCGAT
CACGCCGCCTCCTCTCACTCTGCTTGTATCAGTGCTCAATGACCACAATG
TCCTCCTCTACAAAGCCGTCTTTGACTTTCGTGACCGGCAACGCCAAGAA
GCTCGAGGAAGTGCGGGCCATTCTGATTGCAGGGACAGAGACTGGCAAGG
AGCTACCCTTCGAAATCATCTCCGAAAAGCTTGATCTGCCGGAATTGCAA
GGTGAGCCTGAAGACGTGGCAAGGGAGAAATGCTTGCTGGCCGTAAAGGA
GACGAAGGGACCGACGATTGTCGAAGACACGTGCTTGTGTTTTAATGCCT
TGGGCGGGCTTCCGGGCGTGTATATCAAGTGGTTCTTGGAAAAGCTGGGA
CATGAGGGACTTAATAACCTCCTGGTTGCTTACGAAGATAAGACCGCGTA
TGCCTTGTGTACATTTGCTTACTGCCCTGGACCAGGACAAGAAGTTTTGA
TCTTTGATGGGCGAACCCCGGGAAAGATTGTGCCGGCCCGGGGGCCGCAT
GCGTTTGGGTGGGACCCTGTGTTTGAGCCTTTCGTGGGTCAGCCGGAGGG
GGGTTTACCGTTGCAGACATATGCCGAAATGGACAAGGATGTGAAGAACA
CGATCTCACATCGGTACCGGGCGTTGGCGAAGTTGAGAGATTTTTTGATG
ACTCAGAATGGAAATGGAGGAGGAAGAAGACATGGAGAAGGGCAGGAGGA
AGGGGATGGGAAGGCGAAGGAGACTTGA
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Synonyms
Publications