NO13G01680.1, NO13G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01680.1
Unique NameNO13G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr13:497417..499524 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:497417..499524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01680.1 vs.
Match: EWM21842.1 (hypothetical protein Naga_100051g12 [Nannochloropsis gaditana])

HSP 1 Score: 718.0 bits (1852), Expect = 2.500e-203
Identity = 359/476 (75.42%), Postives = 398/476 (83.61%), Query Frame = 0 
Query:    1 MVCLP---PLLDNLRGFIWSIVLSTSFLILAGLVLGVWLLCEIVFYFYLRYIVLPELNRLTTPEDSVHTPWDEFHKIIDVVSQLKGSYAFEQFFSGWFLGSPIQDIRRGNVREMLAWALYSTAQSALTVRQKACVEDVLYWLKMRFQIDCPEGYNPKVRPMLLTLDPVKYNHRPLLFYAVLTVIQVLGHGVLMLLGFTRHEVNGIAYWYRSRVKDVPAGEQASLPMIFFHGISPGLNLYLLVIHILSKGRKVVLMEVPHIAMCLNFKAKRLGDMVKTVEIIAKRHRMPHFAVAGHSFGSLCAAWVTKHLKHNVRQLILLDPVSLLLGLPDVCYNFLHKRPRTIMEYILHYGGSTEITIHHTLRRQFWWYEGQLFLDAIKCPVFIGLSGNDEIVPSPVLKVYIEDHLKKIHAEEHQRYQARSKCSNSSSNDSTSAQRQCSLSSSGTGNGNHYSN-HGSISNDNLPKSSHSSSNDGKG 473
            M CL    PLL+N R     ++ S  F ++AGL+L  WLLCEI FYFYLRYIVLPELNRLTTP +  HTPWDEFHKIIDVVSQLK SYAFE+FFSGWFLG+PI+DIRRGNVREMLAWALYS AQS LTVRQKACVEDVLYWLKMRFQIDCPEGYNP+VRPMLLTLD + Y HRPL+FYA LTVIQVLGH VL LLGF RHEVNGIAYWYRSRV+DV  GE+ASLPM+FFHGISPGLNLYLLVIH LS+GRK+VLMEVPHIAMCLNFKAKRLGDMVKTVEIIAKRHRMP+F+V GHSFGSLCAAWV+KHLKHNVRQL+LLDPVSLLLGLPDVCYNFLHK+P+T+ME++LHYGGS EITIHHTLRRQFWWYEGQLFLD IKCPV++GLSGNDEIVPS +LK+YIEDHL K HAEEH R+  R++ S                SS G GNG+ +S  H   S     +   +S + GKG
Sbjct:    1 MECLSISSPLLENARSIAGILLSSHIFKVVAGLLLSSWLLCEIAFYFYLRYIVLPELNRLTTPVEGAHTPWDEFHKIIDVVSQLKESYAFERFFSGWFLGAPIKDIRRGNVREMLAWALYSKAQSTLTVRQKACVEDVLYWLKMRFQIDCPEGYNPQVRPMLLTLDKITYMHRPLVFYASLTVIQVLGHSVLTLLGFRRHEVNGIAYWYRSRVRDVRPGEEASLPMVFFHGISPGLNLYLLVIHTLSRGRKMVLMEVPHIAMCLNFKAKRLGDMVKTVEIIAKRHRMPYFSVVGHSFGSLCAAWVSKHLKHNVRQLVLLDPVSLLLGLPDVCYNFLHKKPKTVMEHLLHYGGSMEITIHHTLRRQFWWYEGQLFLDEIKCPVYVGLSGNDEIVPSAILKLYIEDHLAKTHAEEHHRHLIRARRS----------------SSRGVGNGSSHSQPHNQDSTCKTFEKETASVSSGKG 460
The following BLAST results are available for this feature:
BLAST of NO13G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21842.12.500e-20375.42hypothetical protein Naga_100051g12 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01680NO13G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01680.1NO13G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01680.1.cds1NO13G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01680.1.cds2NO13G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01680.1.cds3NO13G01680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01680.1 ID=NO13G01680.1|Name=NO13G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
ATGGTGTGCCTCCCACCCCTACTCGATAATCTGCGGGGCTTTATCTGGTC
TATAGTCCTCTCTACTTCTTTCCTTATATTGGCCGGGCTGGTGCTGGGTG
TCTGGCTTCTGTGTGAAATTGTCTTTTACTTCTACCTCCGATACATCGTC
CTGCCGGAGCTGAATCGATTAACAACACCGGAGGACAGCGTCCATACGCC
TTGGGATGAGTTTCATAAGATTATTGATGTCGTCAGTCAGCTCAAGGGTT
CCTACGCATTCGAGCAGTTTTTCTCCGGCTGGTTCCTAGGCTCGCCGATT
CAAGACATACGCCGAGGAAATGTCAGAGAAATGCTTGCTTGGGCCCTCTA
CAGCACAGCGCAATCAGCCTTGACAGTCAGGCAGAAGGCTTGTGTTGAAG
ATGTGCTATACTGGCTTAAAATGCGCTTCCAGATCGACTGTCCCGAAGGC
TACAACCCTAAGGTCCGGCCGATGCTGCTAACGCTGGACCCAGTCAAATA
CAATCATCGCCCCCTTTTGTTTTACGCTGTCTTGACTGTGATTCAAGTTT
TGGGCCATGGGGTGTTAATGCTGTTGGGTTTTACGCGCCATGAGGTCAAT
GGGATTGCGTATTGGTACCGGTCGCGGGTGAAGGATGTACCCGCAGGAGA
GCAGGCGAGTTTACCAATGATTTTCTTTCATGGCATCTCGCCGGGGTTGA
ATTTATATTTGCTGGTGATTCATATTTTGTCGAAGGGACGGAAAGTGGTT
TTGATGGAGGTGCCACACATCGCCATGTGTTTGAATTTCAAAGCGAAGCG
ACTGGGTGACATGGTTAAGACCGTCGAGATCATAGCCAAACGCCATCGGA
TGCCGCATTTTGCAGTGGCGGGACACTCATTCGGGAGTCTATGCGCGGCC
TGGGTGACCAAACACCTCAAACATAATGTCCGCCAGCTCATCCTTCTCGA
CCCGGTCTCTCTCCTCCTCGGCCTGCCCGACGTGTGTTACAACTTTTTAC
ACAAACGACCGCGAACAATAATGGAATATATACTCCACTACGGCGGATCT
ACGGAAATCACTATCCATCACACCTTGCGTCGGCAGTTCTGGTGGTACGA
AGGCCAGCTTTTTTTAGATGCAATCAAATGCCCTGTTTTCATTGGTTTGA
GTGGAAACGACGAGATTGTTCCCTCGCCGGTCCTGAAAGTTTATATCGAG
GACCACTTGAAAAAGATCCATGCAGAGGAGCATCAGCGGTACCAGGCGCG
GTCCAAGTGCAGCAACAGCAGCAGCAACGACAGCACATCAGCGCAACGAC
AGTGTAGTTTGAGCTCTAGTGGAACAGGCAACGGGAATCACTACAGCAAT
CATGGCAGCATCAGCAACGACAATCTACCTAAGTCGAGTCACAGCAGCAG
CAACGATGGAAAAGGTTACAATAGCAGCAGCAGCGGCAGCAGCAGCAGCA
GGAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCGGTGGACCTAGTGAAAAA
GCCGTAGTGTCGTTTGAGCTGACAGCTTCGGAAAGAGCCAAAAGTACCAA
TGGTGGGTGTAGCGGTGAATGTGGAGCAGCAGCAGGAGCAACAGCTTCTT
GTTATCTGGGAGATAAACGCGGGTGCGTCTTAGAGAGAGTCCAGTACTCC
TACTGGGAAGGATGGTCGCATGGGGAGATATTGTTCCGATTTCCTCAACT
CAAGGCTTTGGATGTGGCAATGCGGGAGCAAGAAAAGCTCTTTCGCTCTC
CGGAGGTGACGGTAGCGATGGAAGCTTCGACGAAGGCACCATCGAGGCAG
AGTAGTTTAAAATAG
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protein sequence of NO13G01680.1

>NO13G01680.1-protein ID=NO13G01680.1-protein|Name=NO13G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MVCLPPLLDNLRGFIWSIVLSTSFLILAGLVLGVWLLCEIVFYFYLRYIV
LPELNRLTTPEDSVHTPWDEFHKIIDVVSQLKGSYAFEQFFSGWFLGSPI
QDIRRGNVREMLAWALYSTAQSALTVRQKACVEDVLYWLKMRFQIDCPEG
YNPKVRPMLLTLDPVKYNHRPLLFYAVLTVIQVLGHGVLMLLGFTRHEVN
GIAYWYRSRVKDVPAGEQASLPMIFFHGISPGLNLYLLVIHILSKGRKVV
LMEVPHIAMCLNFKAKRLGDMVKTVEIIAKRHRMPHFAVAGHSFGSLCAA
WVTKHLKHNVRQLILLDPVSLLLGLPDVCYNFLHKRPRTIMEYILHYGGS
TEITIHHTLRRQFWWYEGQLFLDAIKCPVFIGLSGNDEIVPSPVLKVYIE
DHLKKIHAEEHQRYQARSKCSNSSSNDSTSAQRQCSLSSSGTGNGNHYSN
HGSISNDNLPKSSHSSSNDGKGYNSSSSGSSSSRSSSSSSRSSSGGPSEK
AVVSFELTASERAKSTNGGCSGECGAAAGATASCYLGDKRGCVLERVQYS
YWEGWSHGEILFRFPQLKALDVAMREQEKLFRSPEVTVAMEASTKAPSRQ
SSLK*
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mRNA from alignment at chr13:497417..499524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01680.1 ID=NO13G01680.1|Name=NO13G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp|location=Sequence derived from alignment at chr13:497417..499524+ (Nannochloropsis oceanica)
ATGGTGTGCCTCCCACCCCTACTCGATAATCTGCGGGGCTTTATCTGGTC
TATAGTCCTCTCTACTTCTTTCCTTATATTGGCCGGGCTGGTGCTGGGTG
TCTGGCTTCTGTGTGAAATTGTCTTTTACTTCTACCTCCGATACATCGTC
CTGCCGGAGCTGAATCGATTAACAACACCGGAGGACAGCGTCCATACGCC
TTGGGATGAGTTTCATAAGATTATTGATGTCGTCAGTCAGCTCAAGGTGT
GTTGTGAATCTCAACCCTCTACTCTCACCCATGCACCATTCAACAACAGC
TTTTTGGTGATATGTTTAATCTCTGTTGTTTGTTGTGTATGTCTTCTTTT
TTCGGCCGCCCACCCATCCTCCCCCTCTCCATGCTCCCCTCCCTATGCAA
AGGGTTCCTACGCATTCGAGCAGTTTTTCTCCGGCTGGTTCCTAGGCTCG
CCGATTCAAGACATACGCCGAGGAAATGTCAGAGAAATGCTTGCTTGGGC
CCTCTACAGCACAGCGCAATCAGCCTTGACAGTCAGGCAGAAGGCTTGTG
TTGAAGATGTGAGTGAGAGGGGGGAGGATGGGAGAGCGGGAAGGGGAATG
GAATGTATGTGGACATGTATATCTACGCGTCTTCTCCATACACTTTCCGA
AAGCATTCTTAAGGCTCTCCTTCCATCTCTTCCACCCTCCCGTAGGTGCT
ATACTGGCTTAAAATGCGCTTCCAGATCGACTGTCCCGAAGGCTACAACC
CTAAGGTCCGGCCGATGCTGCTAACGCTGGACCCAGTCAAATACAATCAT
CGCCCCCTTTTGTTTTACGCTGTCTTGACTGTGATTCAAGTTTTGGGCCA
TGGGGTGTTAATGCTGTTGGGTTTTACGCGCCATGAGGTCAATGGGATTG
CGTATTGGTACCGGTCGCGGGTGAAGGATGTACCCGCAGGAGAGCAGGCG
AGTTTACCAATGATTTTCTTTCATGGCATCTCGCCGGGGTTGAATTTATA
TTTGCTGGTGATTCATATTTTGTCGAAGGGACGGAAAGTGGTTTTGATGG
AGGTGCCACACATCGCCATGTGTTTGAATTTCAAAGCGAAGCGACTGGGT
GACATGGTTAAGACCGTCGAGATCATAGCCAAACGCCATCGGATGCCGCA
TTTTGCAGTGGCGGGACACTCATTCGGGAGTCTATGCGCGGCCTGGGTGA
CCAAACACCTCAAACATAATGTCCGCCAGCTCATCCTTCTCGACCCGGTC
TCTCTCCTCCTCGGCCTGCCCGACGTGTGTTACAACTTTTTACACAAACG
ACCGCGAACAATAATGGAATATATACTCCACTACGGCGGATCTACGGAAA
TCACTATCCATCACACCTTGCGTCGGCAGTTCTGGTGGTACGAAGGCCAG
CTTTTTTTAGATGCAATCAAATGCCCTGTTTTCATTGGTTTGAGTGGAAA
CGACGAGATTGTTCCCTCGCCGGTCCTGAAAGTTTATATCGAGGACCACT
TGAAAAAGATCCATGCAGAGGAGCATCAGCGGTACCAGGCGCGGTCCAAG
TGCAGCAACAGCAGCAGCAACGACAGCACATCAGCGCAACGACAGTGTAG
TTTGAGCTCTAGTGGAACAGGCAACGGGAATCACTACAGCAATCATGGCA
GCATCAGCAACGACAATCTACCTAAGTCGAGTCACAGCAGCAGCAACGAT
GGAAAAGGTTACAATAGCAGCAGCAGCGGCAGCAGCAGCAGCAGGAGCAG
CAGCAGCAGCAGCAGGAGCAGCAGCGGTGGACCTAGTGAAAAAGCCGTAG
TGTCGTTTGAGCTGACAGCTTCGGAAAGAGCCAAAAGTACCAATGGTGGG
TGTAGCGGTGAATGTGGAGCAGCAGCAGGAGCAACAGCTTCTTGTTATCT
GGGAGATAAACGCGGGTGCGTCTTAGAGAGAGTCCAGTACTCCTACTGGG
AAGGATGGTCGCATGGGGAGATATTGTTCCGATTTCCTCAACTCAAGGCT
TTGGATGTGGCAATGCGGGAGCAAGAAAAGCTCTTTCGCTCTCCGGAGGT
GACGGTAGCGATGGAAGCTTCGACGAAGGCACCATCGAGGCAGAGTAGTT
TAAAATAG
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Coding sequence (CDS) from alignment at chr13:497417..499524+

>NO13G01680.1 ID=NO13G01680.1|Name=NO13G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1815bp|location=Sequence derived from alignment at chr13:497417..499524+ (Nannochloropsis oceanica)
ATGGTGTGCCTCCCACCCCTACTCGATAATCTGCGGGGCTTTATCTGGTC
TATAGTCCTCTCTACTTCTTTCCTTATATTGGCCGGGCTGGTGCTGGGTG
TCTGGCTTCTGTGTGAAATTGTCTTTTACTTCTACCTCCGATACATCGTC
CTGCCGGAGCTGAATCGATTAACAACACCGGAGGACAGCGTCCATACGCC
TTGGGATGAGTTTCATAAGATTATTGATGTCGTCAGTCAGCTCAAGGGTT
CCTACGCATTCGAGCAGTTTTTCTCCGGCTGGTTCCTAGGCTCGCCGATT
CAAGACATACGCCGAGGAAATGTCAGAGAAATGCTTGCTTGGGCCCTCTA
CAGCACAGCGCAATCAGCCTTGACAGTCAGGCAGAAGGCTTGTGTTGAAG
ATGTGCTATACTGGCTTAAAATGCGCTTCCAGATCGACTGTCCCGAAGGC
TACAACCCTAAGGTCCGGCCGATGCTGCTAACGCTGGACCCAGTCAAATA
CAATCATCGCCCCCTTTTGTTTTACGCTGTCTTGACTGTGATTCAAGTTT
TGGGCCATGGGGTGTTAATGCTGTTGGGTTTTACGCGCCATGAGGTCAAT
GGGATTGCGTATTGGTACCGGTCGCGGGTGAAGGATGTACCCGCAGGAGA
GCAGGCGAGTTTACCAATGATTTTCTTTCATGGCATCTCGCCGGGGTTGA
ATTTATATTTGCTGGTGATTCATATTTTGTCGAAGGGACGGAAAGTGGTT
TTGATGGAGGTGCCACACATCGCCATGTGTTTGAATTTCAAAGCGAAGCG
ACTGGGTGACATGGTTAAGACCGTCGAGATCATAGCCAAACGCCATCGGA
TGCCGCATTTTGCAGTGGCGGGACACTCATTCGGGAGTCTATGCGCGGCC
TGGGTGACCAAACACCTCAAACATAATGTCCGCCAGCTCATCCTTCTCGA
CCCGGTCTCTCTCCTCCTCGGCCTGCCCGACGTGTGTTACAACTTTTTAC
ACAAACGACCGCGAACAATAATGGAATATATACTCCACTACGGCGGATCT
ACGGAAATCACTATCCATCACACCTTGCGTCGGCAGTTCTGGTGGTACGA
AGGCCAGCTTTTTTTAGATGCAATCAAATGCCCTGTTTTCATTGGTTTGA
GTGGAAACGACGAGATTGTTCCCTCGCCGGTCCTGAAAGTTTATATCGAG
GACCACTTGAAAAAGATCCATGCAGAGGAGCATCAGCGGTACCAGGCGCG
GTCCAAGTGCAGCAACAGCAGCAGCAACGACAGCACATCAGCGCAACGAC
AGTGTAGTTTGAGCTCTAGTGGAACAGGCAACGGGAATCACTACAGCAAT
CATGGCAGCATCAGCAACGACAATCTACCTAAGTCGAGTCACAGCAGCAG
CAACGATGGAAAAGGTTACAATAGCAGCAGCAGCGGCAGCAGCAGCAGCA
GGAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCGGTGGACCTAGTGAAAAA
GCCGTAGTGTCGTTTGAGCTGACAGCTTCGGAAAGAGCCAAAAGTACCAA
TGGTGGGTGTAGCGGTGAATGTGGAGCAGCAGCAGGAGCAACAGCTTCTT
GTTATCTGGGAGATAAACGCGGGTGCGTCTTAGAGAGAGTCCAGTACTCC
TACTGGGAAGGATGGTCGCATGGGGAGATATTGTTCCGATTTCCTCAACT
CAAGGCTTTGGATGTGGCAATGCGGGAGCAAGAAAAGCTCTTTCGCTCTC
CGGAGGTGACGGTAGCGATGGAAGCTTCGACGAAGGCACCATCGAGGCAG
AGTAGTTTAAAATAG
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Synonyms
Publications