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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:486901..489027 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01640.1 vs.
Match: EWM21852.1 (xylulose kinase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 797.3 bits (2058), Expect = 2.900e-227 Identity = 410/556 (73.74%), Postives = 462/556 (83.09%), Query Frame = 0
Query: 1 MAAG-GISGGNT-TSMQASSSPLFLGIDLSTQSITVVFVEAG-GRVVHLDTLNFDRDLAQFGTVAGMHVGKHGKVTSPVQMWLEGLDRVLRRQDRATMARVKAVSGSAQQHGSVFWNANGLHALRNMAPADSFSTNLFDGFALEDCPIWADSSTTAECEAIEKAVGGPAKMAALTGSRAYCRFTGPQIAKISRTQPLVWKHTARVSLVSSFLTSLLVGHPAPVDASDASGMNLMNVHTLEWSEELLEATAPGLAARLGTITESWASAGPISPYCAARFGFAADCLVIPASGDNNCSVVGMGLGCDAASTTLMVSLGTSDTIVGLTRNPHPGLEGHVMVSPRGPEEWFAMLCYKNAALAREAVRDAVAGGKWERFSELVAEAPAGNDGNLGLTLVMEEIVPVLSVKGTFRVDRQGERVGEFGSAAYEARAVVEARFLSMKAHAAQLGLSTNPTRIVATGGGSTSKVMMQVLADVFNAQVLVADTSDAAAVGAALRAEHGLACRKQARWVEYEVRQPQGLKVVASPNAEAAAVYSPAVLKRFLDFERGLAMQGQAQQQ 554
MAAG G+ ++ + +S+ L LGIDLSTQS+TVVF++AG R+VH+DTLNFDR+L QFGT AG+HVGK+GKVTSPVQMWL GLDR+LRRQ+R M RVKAVSGSAQQHGS+FW A+GL ALR MAPADSFS+NL+ GFALEDCP WADSST EC+AIE A GGP MAALTGSRAYCRFTGPQIA+++RT+PLVWKHTARVSLVSSFLTSLLVGHPAPVDASDASGMNLMNV T EW EELLEATAPGLAARLGTI W S GPISPYCAARFGF DCLVIPASGDN+CSVVG GL CD ++TLMVSLGTSDT+VGLTR+P PG EGHVMVSPRGP+EWFAMLCYKN ALAREAVRD VAGG W++F +LVA AP GNDGNL +TLVMEEIVPVL ++G+FRVD Q E V S A+EARAVVEARFLSM+ HA LGL T P+RI+ATGGGS S + QVLADVFNA VLVAD+S+AAAVGAALRA HGL C+KQARWVE + KV+A+PNA+AAA Y +LKRF FERGL + Q Q
Sbjct: 1 MAAGRGLDEASSHANTGGASTALLLGIDLSTQSVTVVFLDAGTNRIVHIDTLNFDRELPQFGTSAGLHVGKNGKVTSPVQMWLVGLDRILRRQERTLMGRVKAVSGSAQQHGSIFWTADGLAALRCMAPADSFSSNLYGGFALEDCPTWADSSTQMECDAIESATGGPGAMAALTGSRAYCRFTGPQIARVARTEPLVWKHTARVSLVSSFLTSLLVGHPAPVDASDASGMNLMNVRTSEWCEELLEATAPGLAARLGTIVNPWESLGPISPYCAARFGFVTDCLVIPASGDNSCSVVGTGLACDQTASTLMVSLGTSDTLVGLTRSPRPGPEGHVMVSPRGPDEWFAMLCYKNGALAREAVRDRVAGGCWKKFDDLVASAPPGNDGNLAMTLVMEEIVPVLPIRGSFRVDAQDEPVAAL-SEAHEARAVVEARFLSMRVHAGNLGLPTAPSRIIATGGGSMSTSLTQVLADVFNAPVLVADSSEAAAVGAALRAGHGLKCKKQARWVELLASPLKDFKVMATPNAQAAAAYPATLLKRFAAFERGLVAKAQKHPQ 555
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01640.1 ID=NO13G01640.1|Name=NO13G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp
AGCTCAGTCGGTCGTACACGACCATTCAAGACGAAGACCATGGCCGCAGG
AGGAATTTCCGGGGGAAATACTACCAGTATGCAAGCGTCATCCTCTCCGC
TCTTTCTGGGGATCGACCTTTCCACCCAGAGCATCACGGTGGTTTTTGTT
GAGGCAGGTGGTCGTGTGGTCCACCTCGACACGCTCAACTTTGACCGGGA
CTTGGCGCAGTTTGGCACGGTCGCGGGCATGCACGTGGGAAAACACGGCA
AGGTCACAAGTCCTGTCCAGATGTGGTTGGAGGGCCTTGACCGGGTGCTG
CGCCGCCAAGACCGTGCGACCATGGCCCGTGTCAAAGCCGTATCGGGCTC
GGCGCAGCAGCACGGGAGTGTGTTCTGGAACGCCAATGGCCTGCATGCGT
TGCGTAATATGGCGCCTGCGGACAGTTTTTCCACGAACCTATTTGATGGC
TTTGCGTTAGAGGACTGCCCGATCTGGGCTGATTCATCGACGACGGCCGA
ATGTGAGGCAATCGAGAAAGCTGTAGGTGGCCCTGCAAAGATGGCGGCCT
TAACAGGCTCTCGGGCGTACTGTCGCTTCACAGGCCCGCAAATTGCCAAA
ATTTCGCGCACGCAGCCATTGGTTTGGAAGCACACGGCGCGCGTCTCGCT
CGTGTCATCGTTTTTGACGTCGCTTTTGGTAGGACACCCGGCGCCGGTGG
ACGCCTCCGATGCTTCAGGGATGAATTTGATGAACGTGCACACCTTGGAG
TGGTCAGAGGAGCTTCTGGAAGCCACGGCACCGGGTCTGGCTGCACGTTT
GGGGACGATCACCGAGAGCTGGGCATCTGCAGGTCCGATTTCGCCTTACT
GTGCGGCGCGCTTTGGGTTTGCGGCCGATTGCCTGGTTATTCCCGCCTCG
GGCGACAATAATTGCTCGGTGGTGGGAATGGGGTTGGGGTGTGACGCAGC
TTCGACCACGTTGATGGTAAGTCTAGGAACGTCGGACACAATAGTGGGAT
TGACTCGTAACCCCCATCCGGGGTTGGAGGGGCATGTGATGGTCTCGCCT
CGAGGGCCGGAGGAATGGTTCGCCATGTTGTGTTATAAGAATGCAGCGCT
GGCACGGGAGGCGGTGCGGGACGCAGTGGCGGGGGGGAAGTGGGAGAGGT
TTTCGGAGTTGGTTGCAGAGGCCCCAGCGGGGAATGACGGGAATTTGGGA
CTGACGTTGGTGATGGAAGAAATTGTGCCGGTGTTGAGTGTGAAGGGGAC
GTTTCGGGTGGACAGGCAGGGGGAAAGGGTGGGGGAGTTTGGGAGTGCGG
CTTATGAGGCGAGGGCGGTGGTTGAAGCGAGGTTTCTGTCCATGAAGGCA
CATGCGGCTCAGTTGGGTTTGTCGACGAACCCGACCCGGATTGTGGCGAC
GGGTGGAGGGTCGACGAGCAAGGTGATGATGCAAGTGCTTGCGGATGTAT
TTAATGCCCAGGTTTTGGTGGCGGACACCTCGGACGCGGCTGCAGTGGGG
GCAGCTTTGCGGGCGGAGCATGGATTGGCATGTCGGAAGCAGGCAAGGTG
GGTGGAGTATGAGGTGAGGCAACCGCAGGGGTTGAAGGTGGTGGCAAGCC
CGAATGCTGAGGCTGCTGCTGTATATTCGCCGGCGGTGTTGAAACGATTC
TTAGACTTTGAGAGGGGGCTGGCGATGCAGGGACAGGCGCAACAGCAGCA
GGCGTAGAAGTGTAAGGAGAAGTATGTAGAGTACGTATGCAGGTTCAAAG
GAGAGGTGAGAAGGAAAACTTTAGACATTTTTTGAATATTTTGTTTTACG
GTATGTCAGGGAGTAAGTGGGGGGTATGTGACTCATGAAATGAAGGGAAA
AGAAGAGGAAATTAGATTGGATACAAACCATAGAAGCAAAGGTACGTGGA
AGGGATGAAAAAAGGGGGGGGCACCAATGTACGCTGTATAGAAAGAAGGA
GCAAACAAGAACAGGCTCACTCAGA back to topprotein sequence of NO13G01640.1 >NO13G01640.1-protein ID=NO13G01640.1-protein|Name=NO13G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MAAGGISGGNTTSMQASSSPLFLGIDLSTQSITVVFVEAGGRVVHLDTLN
FDRDLAQFGTVAGMHVGKHGKVTSPVQMWLEGLDRVLRRQDRATMARVKA
VSGSAQQHGSVFWNANGLHALRNMAPADSFSTNLFDGFALEDCPIWADSS
TTAECEAIEKAVGGPAKMAALTGSRAYCRFTGPQIAKISRTQPLVWKHTA
RVSLVSSFLTSLLVGHPAPVDASDASGMNLMNVHTLEWSEELLEATAPGL
AARLGTITESWASAGPISPYCAARFGFAADCLVIPASGDNNCSVVGMGLG
CDAASTTLMVSLGTSDTIVGLTRNPHPGLEGHVMVSPRGPEEWFAMLCYK
NAALAREAVRDAVAGGKWERFSELVAEAPAGNDGNLGLTLVMEEIVPVLS
VKGTFRVDRQGERVGEFGSAAYEARAVVEARFLSMKAHAAQLGLSTNPTR
IVATGGGSTSKVMMQVLADVFNAQVLVADTSDAAAVGAALRAEHGLACRK
QARWVEYEVRQPQGLKVVASPNAEAAAVYSPAVLKRFLDFERGLAMQGQA
QQQQA* back to topmRNA from alignment at chr13:486901..489027- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01640.1 ID=NO13G01640.1|Name=NO13G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp|location=Sequence derived from alignment at chr13:486901..489027- (Nannochloropsis oceanica)
AGCTCAGTCGGTCGTACACGACCATTCAAGACGAAGACCATGGCCGCAGG
AGGAATTTCCGGGGGAAATACTACCAGTATGCAAGCGTCATCCTCTCCGC
TCTTTCTGGGGATCGACCTTTCCACCCAGAGCATCACGGTGGTTTTTGTT
GAGGCAGGTGGTCGTGTGGTCCACCTCGACACGCTCAACTTTGACCGGGA
CTTGGCGCAGTTTGGCACGGTCGCGGGCATGCACGTGGGAAAACACGGCA
AGGTCACAAGTCCTGTCCAGATGTGGTTGGAGGGCCTTGACCGGGTGCTG
CGCCGCCAAGACCGTGCGACCATGGCCCGTGTCAAAGCCGTATCGGGCTC
GGCGCAGCAGCACGGGAGTGTGTTCTGGAACGCCAATGGCCTGCATGCGT
TGCGTAATATGGCGCCTGCGGACAGTTTTTCCACGAACCTATTTGATGGC
TTTGCGTTAGAGGACTGCCCGATCTGGGCTGATTCATCGACGACGGCCGA
ATGTGAGGCAATCGAGAAAGCTGTAGGTGGCCCTGCAAAGATGGCGGCCT
TAACAGGCTCTCGGGCGTACTGTCGCTTCACAGGCCCGCAAATTGCCAAA
ATTTCGCGCACGCAGCCATTGGTTTGGAAGCACACGGCGCGCGTCTCGCT
CGTGTCATCGTTTTTGACGTCGCTTTTGGTAGGACACCCGGCGCCGGTGG
ACGCCTCCGATGCTTCAGGGATGAATTTGATGAACGTGCACACCTTGGAG
TGGTCAGAGGAGCTTCTGGAAGCCACGGCACCGGGTCTGGCTGCACGTTT
GGGGACGATCACCGAGAGCTGGGCATCTGCAGGTCCGATTTCGCCTTACT
GTGCGGCGCGCTTTGGGTTTGCGGCCGATTGCCTGGTTATTCCCGCCTCG
GGCGACAAGTAAGTCCTCTAGTGTCCGTTCCTTGTCGGCTTTTCATCGAG
TCGTGTGATGAGATTGCGAGGATTAGCTCGGGATGGGCTTGGCTGGAAAT
ATCGACGGAAAGGAAAGCTCAGTTCTCCATTTATCCCTTTCCCTATTGAA
ATACACACAGTAATTGCTCGGTGGTGGGAATGGGGTTGGGGTGTGACGCA
GCTTCGACCACGTTGATGGTAAGTCTAGGAACGTCGGACACAATAGTGGG
ATTGACTCGTAACCCCCATCCGGGGTTGGAGGGGCATGTGATGGTCTCGC
CTCGAGGGCCGGAGGAATGGTTCGCCATGTTGTGTTATAAGAATGCAGCG
CTGGCACGGGAGGCGGTGCGGGACGCAGTGGCGGGGGGGAAGTGGGAGAG
GTTTTCGGAGTTGGTTGCAGAGGCCCCAGCGGGGAATGACGGGAATTTGG
GACTGACGTTGGTGATGGAAGAAATTGTGCCGGTGTTGAGTGTGAAGGGG
ACGTTTCGGGTGGACAGGCAGGGGGAAAGGGTGGGGGAGTTTGGGAGTGC
GGCTTATGAGGCGAGGGCGGTGGTTGAAGCGAGGTTTCTGTCCATGAAGG
CACATGCGGCTCAGTTGGGTTTGTCGACGAACCCGACCCGGATTGTGGCG
ACGGGTGGAGGGTCGACGAGCAAGGTGATGATGCAAGTGCTTGCGGATGT
ATTTAATGCCCAGGTTTTGGTGGCGGACACCTCGGACGCGGCTGCAGTGG
GGGCAGCTTTGCGGGCGGAGCATGGATTGGCATGTCGGAAGCAGGCAAGG
TGGGTGGAGTATGAGGTGAGGCAACCGCAGGGGTTGAAGGTGGTGGCAAG
CCCGAATGCTGAGGCTGCTGCTGTATATTCGCCGGCGGTGTTGAAACGAT
TCTTAGACTTTGAGAGGGGGCTGGCGATGCAGGGACAGGCGCAACAGCAG
CAGGCGTAGAAGTGTAAGGAGAAGTATGTAGAGTACGTATGCAGGTTCAA
AGGAGAGGTGAGAAGGAAAACTTTAGACATTTTTTGAATATTTTGTTTTA
CGGTATGTCAGGGAGTAAGTGGGGGGTATGTGACTCATGAAATGAAGGGA
AAAGAAGAGGAAATTAGATTGGATACAAACCATAGAAGCAAAGGTACGTG
GAAGGGATGAAAAAAGGGGGGGGCACCAATGTACGCTGTATAGAAAGAAG
GAGCAAACAAGAACAGGCTCACTCAGA back to topCoding sequence (CDS) from alignment at chr13:486901..489027- >NO13G01640.1 ID=NO13G01640.1|Name=NO13G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr13:486901..489027- (Nannochloropsis oceanica)
ATGGCCGCAGGAGGAATTTCCGGGGGAAATACTACCAGTATGCAAGCGTC
ATCCTCTCCGCTCTTTCTGGGGATCGACCTTTCCACCCAGAGCATCACGG
TGGTTTTTGTTGAGGCAGGTGGTCGTGTGGTCCACCTCGACACGCTCAAC
TTTGACCGGGACTTGGCGCAGTTTGGCACGGTCGCGGGCATGCACGTGGG
AAAACACGGCAAGGTCACAAGTCCTGTCCAGATGTGGTTGGAGGGCCTTG
ACCGGGTGCTGCGCCGCCAAGACCGTGCGACCATGGCCCGTGTCAAAGCC
GTATCGGGCTCGGCGCAGCAGCACGGGAGTGTGTTCTGGAACGCCAATGG
CCTGCATGCGTTGCGTAATATGGCGCCTGCGGACAGTTTTTCCACGAACC
TATTTGATGGCTTTGCGTTAGAGGACTGCCCGATCTGGGCTGATTCATCG
ACGACGGCCGAATGTGAGGCAATCGAGAAAGCTGTAGGTGGCCCTGCAAA
GATGGCGGCCTTAACAGGCTCTCGGGCGTACTGTCGCTTCACAGGCCCGC
AAATTGCCAAAATTTCGCGCACGCAGCCATTGGTTTGGAAGCACACGGCG
CGCGTCTCGCTCGTGTCATCGTTTTTGACGTCGCTTTTGGTAGGACACCC
GGCGCCGGTGGACGCCTCCGATGCTTCAGGGATGAATTTGATGAACGTGC
ACACCTTGGAGTGGTCAGAGGAGCTTCTGGAAGCCACGGCACCGGGTCTG
GCTGCACGTTTGGGGACGATCACCGAGAGCTGGGCATCTGCAGGTCCGAT
TTCGCCTTACTGTGCGGCGCGCTTTGGGTTTGCGGCCGATTGCCTGGTTA
TTCCCGCCTCGGGCGACAATAATTGCTCGGTGGTGGGAATGGGGTTGGGG
TGTGACGCAGCTTCGACCACGTTGATGGTAAGTCTAGGAACGTCGGACAC
AATAGTGGGATTGACTCGTAACCCCCATCCGGGGTTGGAGGGGCATGTGA
TGGTCTCGCCTCGAGGGCCGGAGGAATGGTTCGCCATGTTGTGTTATAAG
AATGCAGCGCTGGCACGGGAGGCGGTGCGGGACGCAGTGGCGGGGGGGAA
GTGGGAGAGGTTTTCGGAGTTGGTTGCAGAGGCCCCAGCGGGGAATGACG
GGAATTTGGGACTGACGTTGGTGATGGAAGAAATTGTGCCGGTGTTGAGT
GTGAAGGGGACGTTTCGGGTGGACAGGCAGGGGGAAAGGGTGGGGGAGTT
TGGGAGTGCGGCTTATGAGGCGAGGGCGGTGGTTGAAGCGAGGTTTCTGT
CCATGAAGGCACATGCGGCTCAGTTGGGTTTGTCGACGAACCCGACCCGG
ATTGTGGCGACGGGTGGAGGGTCGACGAGCAAGGTGATGATGCAAGTGCT
TGCGGATGTATTTAATGCCCAGGTTTTGGTGGCGGACACCTCGGACGCGG
CTGCAGTGGGGGCAGCTTTGCGGGCGGAGCATGGATTGGCATGTCGGAAG
CAGGCAAGGTGGGTGGAGTATGAGGTGAGGCAACCGCAGGGGTTGAAGGT
GGTGGCAAGCCCGAATGCTGAGGCTGCTGCTGTATATTCGCCGGCGGTGT
TGAAACGATTCTTAGACTTTGAGAGGGGGCTGGCGATGCAGGGACAGGCG
CAACAGCAGCAGGCGTAG back to top
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