NO13G01580.1, NO13G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01580.1
Unique NameNO13G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1479
Alignment locationchr13:467978..469563 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:467978..469563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01580.1 vs.
Match: EWM21868.1 (nadph:adrenodoxin mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 629.0 bits (1621), Expect = 1.200e-176
Identity = 343/515 (66.60%), Postives = 389/515 (75.53%), Query Frame = 0 
Query:   11 AATLHHLSFSTTSPTSDSAPAAVSIRRVGIVGAGPSGFYVAKYLLKELGQSATVEMIDCLPTPFGLVRTGVAPDHPEVKSVQKDFEKVAEDRRFHFFGNIRVGQDVGMAELRAFYDVVVLAYGASEDRTLGIPGEDTLEGVVSARTFVNWYNGHPDYAPDKKLTAMLRDILAQPGAQAAVLGQGNVALDCARLLVKQPADLASSDICEHALEVLKQSQLTTMSVIGRRGHGQAAFTIKELRELSRIAGATLVVPPEEVMQGLTPFTIANLAQSRPRKRLADLVESLPAPAATAE------------------AATAAGRR-----------------GGGGRIVAAGTGEVIEIPCNLVLRSIGYKSRPLEGVPFDNKKAVVPNRQGRVLVEISPETGKLEPAVSAPVAGEVVPGMYCTGWVKRGPTGIVNTNIYDARETVASIVEDAVQGRLNLASSSSSSLLEVLSKAGRKKVEEVVTWQGYKKIDAYECMVGAAKGKPREKVIDAQELVLIA 491
            A+  HH+ FST +P   +A   +S  RVGIVGAGPSGFYVAKYLLKELG  ATV+++D LPTPFGLVRTGVAPDHPEVK+VQ DFEKVA D RF F+GN+RVG DV +A LR+ YDV+VLAYGASEDRTLGIPGEDTLEGVVSARTFVNWYNGHPDYA D KLT ML +ILAQ  AQ AVLGQGNVALDCAR+L K+PADL +SDICEHALEVL++S+L  +SV+GRRGHGQAAFTIKELRELSRI GA LVVPPEEV  GLT FTIA LAQSRPRKRL DLV SLP PA   +                  A     RR                 G G R+VA GTGE  E+PC L LRSIGYKS+P+EG+PFDNKKAVVPNR GRVL   S E        + P     VPG+YCTGWVKRGP+GI+NTNIYDARETVA+I+EDA QG+L    SSSSSLLE L++AGRKK E+VV+W+GY KIDA+E   GAA+GKPREKV D++ L+ IA
Sbjct:   26 ASRKHHVCFST-NPLYGTASNIIS--RVGIVGAGPSGFYVAKYLLKELGPGATVDVMDSLPTPFGLVRTGVAPDHPEVKAVQSDFEKVAGDPRFSFYGNVRVGYDVDVATLRSLYDVLVLAYGASEDRTLGIPGEDTLEGVVSARTFVNWYNGHPDYAQDAKLTGMLGEILAQASAQVAVLGQGNVALDCARVLAKRPADLETSDICEHALEVLRESKLAAVSVVGRRGHGQAAFTIKELRELSRIPGARLVVPPEEVAMGLTEFTIAELAQSRPRKRLTDLVASLPGPAVGGQAGEGRERVVALRFLLLPRAFLPDPRRPRRLGAVVFERARLELDGQGKRVVAVGTGETEELPCQLALRSIGYKSQPVEGLPFDNKKAVVPNRHGRVLEAASEE--------AVP-----VPGVYCTGWVKRGPSGIINTNIYDARETVAAIMEDATQGKLPF--SSSSSLLEALAQAGRKKPEDVVSWEGYGKIDAWERRHGAARGKPREKVTDSRRLLEIA 522
The following BLAST results are available for this feature:
BLAST of NO13G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21868.11.200e-17666.60nadph:adrenodoxin mitochondrial [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01580NO13G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01580.1NO13G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01580.1.cds1NO13G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01580.1.cds2NO13G01580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01580.1 ID=NO13G01580.1|Name=NO13G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp
ATGTCGTCGTCCCGATCATCTGCCTACCCGGCCGCAACTTTACATCACCT
CTCCTTCTCCACGACCTCTCCCACTTCCGATTCAGCGCCCGCTGCTGTCA
GCATCCGTCGTGTGGGTATCGTGGGTGCAGGACCTTCAGGATTCTACGTT
GCCAAGTACCTGCTCAAGGAGCTGGGGCAAAGCGCGACGGTGGAGATGAT
CGACTGCCTGCCCACGCCCTTTGGGCTTGTCCGAACGGGCGTCGCACCCG
ACCATCCCGAGGTCAAGTCGGTCCAAAAAGACTTCGAAAAGGTAGCAGAA
GACCGACGTTTTCATTTCTTTGGCAATATCCGTGTGGGGCAAGACGTAGG
GATGGCTGAACTGCGTGCGTTTTATGACGTTGTTGTGCTGGCGTACGGAG
CGTCGGAGGACCGCACATTGGGTATCCCAGGCGAAGACACCTTGGAAGGT
GTGGTCAGTGCCCGAACCTTTGTCAATTGGTACAACGGCCATCCTGATTA
TGCACCTGACAAGAAATTGACAGCGATGCTTCGTGACATTCTTGCCCAGC
CCGGCGCGCAGGCCGCGGTGTTGGGGCAGGGGAACGTGGCCTTGGATTGT
GCCCGTCTTCTCGTCAAGCAACCGGCGGACCTTGCGTCAAGTGATATCTG
TGAGCATGCCTTGGAGGTACTAAAACAGAGTCAACTTACCACCATGTCTG
TGATCGGACGGCGAGGGCATGGACAAGCAGCGTTTACCATAAAAGAATTG
AGAGAGCTATCCCGGATAGCAGGAGCCACGTTGGTCGTCCCTCCGGAGGA
GGTCATGCAAGGTCTCACACCATTTACCATCGCCAATCTCGCTCAATCCC
GTCCTCGCAAGCGCTTGGCAGACCTGGTGGAATCCTTGCCTGCTCCTGCA
GCAACAGCAGAAGCAGCAACAGCAGCTGGACGAAGGGGGGGAGGGGGACG
GATCGTGGCTGCGGGGACGGGGGAAGTAATTGAGATACCGTGTAATTTGG
TGCTAAGGTCGATTGGGTACAAATCCCGGCCTCTGGAAGGAGTACCATTT
GATAATAAAAAAGCGGTGGTCCCGAATCGTCAGGGACGGGTGTTGGTTGA
GATATCACCAGAAACAGGAAAACTGGAACCAGCAGTATCGGCTCCAGTAG
CAGGGGAGGTTGTGCCTGGGATGTATTGCACCGGGTGGGTTAAGAGGGGT
CCGACCGGCATTGTGAATACAAACATTTACGACGCACGGGAAACAGTGGC
TTCCATTGTGGAGGACGCGGTACAGGGTAGGTTGAACCTTGCATCCTCTT
CCTCGTCGTCGCTCTTGGAGGTGTTATCCAAGGCGGGGAGGAAGAAAGTG
GAGGAGGTGGTGACTTGGCAAGGGTACAAGAAGATCGATGCATATGAGTG
CATGGTAGGGGCGGCGAAGGGAAAACCAAGGGAGAAGGTGATTGACGCAC
AAGAGCTTGTGCTGATAGCGACTAGATAG
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protein sequence of NO13G01580.1

>NO13G01580.1-protein ID=NO13G01580.1-protein|Name=NO13G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MSSSRSSAYPAATLHHLSFSTTSPTSDSAPAAVSIRRVGIVGAGPSGFYV
AKYLLKELGQSATVEMIDCLPTPFGLVRTGVAPDHPEVKSVQKDFEKVAE
DRRFHFFGNIRVGQDVGMAELRAFYDVVVLAYGASEDRTLGIPGEDTLEG
VVSARTFVNWYNGHPDYAPDKKLTAMLRDILAQPGAQAAVLGQGNVALDC
ARLLVKQPADLASSDICEHALEVLKQSQLTTMSVIGRRGHGQAAFTIKEL
RELSRIAGATLVVPPEEVMQGLTPFTIANLAQSRPRKRLADLVESLPAPA
ATAEAATAAGRRGGGGRIVAAGTGEVIEIPCNLVLRSIGYKSRPLEGVPF
DNKKAVVPNRQGRVLVEISPETGKLEPAVSAPVAGEVVPGMYCTGWVKRG
PTGIVNTNIYDARETVASIVEDAVQGRLNLASSSSSSLLEVLSKAGRKKV
EEVVTWQGYKKIDAYECMVGAAKGKPREKVIDAQELVLIATR*
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mRNA from alignment at chr13:467978..469563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01580.1 ID=NO13G01580.1|Name=NO13G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp|location=Sequence derived from alignment at chr13:467978..469563+ (Nannochloropsis oceanica)
ATGTCGTCGTCCCGATCATCTGCCTACCCGGCCGCAACTTTACATCACCT
CTCCTTCTCCACGACCTCTCCCACTTCCGATTCAGCGCCCGCTGCTGTCA
GCATCCGTCGTGTGGGTATCGTGGGTGCAGGACCTTCAGGATTCTACGTT
GCCAAGTACCTGCTCAAGGAGCTGGGGCAAAGCGCGACGGTGGAGATGAT
CGACTGCCTGCCCACGCCCTTTGGGCTTGTCCGAACGGGCGTCGCACCCG
ACCATCCCGAGGTCAAGTCGGTCCAAAAAGACTTCGAAAAGGTAGCAGAA
GACCGACGTTTTCATTTCTTTGGCAATATCCGTGTGGGGCAAGACGTAGG
GATGGCTGAACTGCGTGCGTTTTATGACGTTGTTGTGCTGGCGTACGGAG
CGTCGGAGGACCGCACATTGGGTATCCCAGGCGAAGACACCTTGGAAGGT
GTGGTCAGTGCCCGAACCTTTGTCAATTGGTACAACGGCCATCCTGATTA
TGCACCTGACAAGAAATTGACAGCGATGCTTCGTGACATTCTTGCCCAGC
CCGGCGCGCAGGCCGCGGTGTTGGGGCAGGGGAACGTGGCCTTGGATTGT
GCCCGTCTTCTCGTCAAGCAACCGGCGGACCTTGCGTCAAGTGATATCTG
TGAGCATGCCTTGGAGGTACTAAAACAGAGTCAACTTACCACCATGTCTG
TGATCGGACGGCGAGGGCATGGACAAGCAGCGTTTACCATAAAAGAATTG
AGAGAGCTATCCCGGATAGCAGGAGCCACGTTGGTCGTCCCTCCGGAGGA
GGTCATGCAAGGTCTCACACCATTTACCATCGCCAATCTCGCTCAATCCC
GTCCTCGCAAGCGCTTGGCAGACCTGGTGGAATCCTTGCCTGCTCCTGCA
GCAACAGCAGAAGCAGCAACAGCAGCTGGACGTACTGTTGTCCTTCGATT
CCTGCTCCTCCCCAAGGCGCTACTACCCGACCCAGCAAGACCAAGCCATG
TTGGGTCCATCGTTTTCGAACGTGCACGGCTTGAACAGGAAGGGGGGGAG
GGGGACGGATCGTGGCTGCGGGGACGGGGGAAGTAATTGAGATACCGTGT
AATTTGGTGCTAAGGTCGATTGGGTACAAATCCCGGCCTCTGGAAGGAGT
ACCATTTGATAATAAAAAAGCGGTGGTCCCGAATCGTCAGGGACGGGTGT
TGGTTGAGATATCACCAGAAACAGGAAAACTGGAACCAGCAGTATCGGCT
CCAGTAGCAGGGGAGGTTGTGCCTGGGATGTATTGCACCGGGTGGGTTAA
GAGGGGTCCGACCGGCATTGTGAATACAAACATTTACGACGCACGGGAAA
CAGTGGCTTCCATTGTGGAGGACGCGGTACAGGGTAGGTTGAACCTTGCA
TCCTCTTCCTCGTCGTCGCTCTTGGAGGTGTTATCCAAGGCGGGGAGGAA
GAAAGTGGAGGAGGTGGTGACTTGGCAAGGGTACAAGAAGATCGATGCAT
ATGAGTGCATGGTAGGGGCGGCGAAGGGAAAACCAAGGGAGAAGGTGATT
GACGCACAAGAGCTTGTGCTGATAGCGACTAGATAG
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Coding sequence (CDS) from alignment at chr13:467978..469563+

>NO13G01580.1 ID=NO13G01580.1|Name=NO13G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr13:467978..469563+ (Nannochloropsis oceanica)
ATGTCGTCGTCCCGATCATCTGCCTACCCGGCCGCAACTTTACATCACCT
CTCCTTCTCCACGACCTCTCCCACTTCCGATTCAGCGCCCGCTGCTGTCA
GCATCCGTCGTGTGGGTATCGTGGGTGCAGGACCTTCAGGATTCTACGTT
GCCAAGTACCTGCTCAAGGAGCTGGGGCAAAGCGCGACGGTGGAGATGAT
CGACTGCCTGCCCACGCCCTTTGGGCTTGTCCGAACGGGCGTCGCACCCG
ACCATCCCGAGGTCAAGTCGGTCCAAAAAGACTTCGAAAAGGTAGCAGAA
GACCGACGTTTTCATTTCTTTGGCAATATCCGTGTGGGGCAAGACGTAGG
GATGGCTGAACTGCGTGCGTTTTATGACGTTGTTGTGCTGGCGTACGGAG
CGTCGGAGGACCGCACATTGGGTATCCCAGGCGAAGACACCTTGGAAGGT
GTGGTCAGTGCCCGAACCTTTGTCAATTGGTACAACGGCCATCCTGATTA
TGCACCTGACAAGAAATTGACAGCGATGCTTCGTGACATTCTTGCCCAGC
CCGGCGCGCAGGCCGCGGTGTTGGGGCAGGGGAACGTGGCCTTGGATTGT
GCCCGTCTTCTCGTCAAGCAACCGGCGGACCTTGCGTCAAGTGATATCTG
TGAGCATGCCTTGGAGGTACTAAAACAGAGTCAACTTACCACCATGTCTG
TGATCGGACGGCGAGGGCATGGACAAGCAGCGTTTACCATAAAAGAATTG
AGAGAGCTATCCCGGATAGCAGGAGCCACGTTGGTCGTCCCTCCGGAGGA
GGTCATGCAAGGTCTCACACCATTTACCATCGCCAATCTCGCTCAATCCC
GTCCTCGCAAGCGCTTGGCAGACCTGGTGGAATCCTTGCCTGCTCCTGCA
GCAACAGCAGAAGCAGCAACAGCAGCTGGACGAAGGGGGGGAGGGGGACG
GATCGTGGCTGCGGGGACGGGGGAAGTAATTGAGATACCGTGTAATTTGG
TGCTAAGGTCGATTGGGTACAAATCCCGGCCTCTGGAAGGAGTACCATTT
GATAATAAAAAAGCGGTGGTCCCGAATCGTCAGGGACGGGTGTTGGTTGA
GATATCACCAGAAACAGGAAAACTGGAACCAGCAGTATCGGCTCCAGTAG
CAGGGGAGGTTGTGCCTGGGATGTATTGCACCGGGTGGGTTAAGAGGGGT
CCGACCGGCATTGTGAATACAAACATTTACGACGCACGGGAAACAGTGGC
TTCCATTGTGGAGGACGCGGTACAGGGTAGGTTGAACCTTGCATCCTCTT
CCTCGTCGTCGCTCTTGGAGGTGTTATCCAAGGCGGGGAGGAAGAAAGTG
GAGGAGGTGGTGACTTGGCAAGGGTACAAGAAGATCGATGCATATGAGTG
CATGGTAGGGGCGGCGAAGGGAAAACCAAGGGAGAAGGTGATTGACGCAC
AAGAGCTTGTGCTGATAGCGACTAGATAG
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Synonyms
Publications