NO13G01510.1, NO13G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01510.1
Unique NameNO13G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1731
Alignment locationchr13:451994..453724 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:451994..453724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01510.1 vs.
Match: EWM21815.1 (rps6ka4 protein [Nannochloropsis gaditana])

HSP 1 Score: 228.0 bits (580), Expect = 7.400e-56
Identity = 137/251 (54.58%), Postives = 170/251 (67.73%), Query Frame = 0 
Query:  322 PSSSHLYRTHSFCGTNEYLSPELLLNQGHSLPVDWWCLGLCLHEMLTRKHPFKPPSTSPSLPPSRPPS--LPPSLPPS-PAETLRNICAFPPSLHPSLSPSARLLILALLDKNPDTRLGGVARLKEHSFFAGLNWEEIERKEVEAPYVPVVRGQEDTRCFSWVYTEGRMRHSEVVFREEEEEEEEEEEEVEEEEGEGWGGKEGGMMCGSAFGKVRGMCGAGTVREGGRRGRRKEGEWKDKDDGAWDGFDYV 570
            P+ + LYR+HSFCGT+EYL+PE+LLNQGHSLPVDWWCLGLCLHEMLTR+HPFKP    PSLPPS  PS   P S PP+ P E +RNIC FPP LHPSLS  A  L++ LL+K+PD RLGGVA L++  FF  LNWE +  K VEAPY P VR  ED  CF+   TE R+R+S+VV  E+     + E   E  EGE  GG  G ++     G+ RG C   + R  GR+ RR+E     +++G W+GF+YV
Sbjct:  256 PAPATLYRSHSFCGTHEYLAPEVLLNQGHSLPVDWWCLGLCLHEMLTRRHPFKP-LPPPSLPPSPAPSPSSPASSPPACPGEVMRNICGFPPFLHPSLSSDAAALLVRLLEKDPDRRLGGVAALRQQPFFKNLNWEAVYEKRVEAPYRPRVRSDEDVGCFAGCLTEERVRYSDVVASEDGWVRGKGE---EGREGEREGG--GCLLPVWPRGRGRGECQGWSWR--GRKTRREE-----EEEGMWEGFEYV 493
The following BLAST results are available for this feature:
BLAST of NO13G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21815.17.400e-5654.58rps6ka4 protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01510NO13G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01510.1NO13G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01510.1.cds1NO13G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01510.1 ID=NO13G01510.1|Name=NO13G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp
ATGAAGGAGGAGGCGGCGAGGGTGTATGTCGCAGAAATTGCACTGGCGAT
TGAGTACATGCATGGGAAAGGGGTTATTTACAGAGACTTAAAGCCGGAGA
ATATATTGATGGGGAGGGATGGGCATGTGAAGTTAACGGATTTGGGGTTG
GCGCGGCATTTTGTAAGCGAGCCGCCGTTGCACTCACTCGTGGATGAAAG
AGGGGGTGATGGGGAGGGAAGAAGCTGGGCGCTTAATAGGGATCCAAAGC
CGGAGAATGCGGTAATGGGGAGGGATTGGCACGCGAAGCTGTCGGATGTG
ATGCGGAGGGAAGGAGGTTGTGGCGATGGACGCGATGATCCAGCGGAGGA
TAATGGGGCTGACGTTGAGAGAAAAGGTGCAGGGGTCAATATAGTGGCAG
CAGCTGCAGCAGTAAGAGAGCCAGCAGCTGCGAGGCTAGTACCAGTGCCG
GCTGCTTCGGCGCCTGCTGTTGCTGTTGCTGCTGCTGCTGCTGCTACCCC
TCCTCCTGCAGCAGCAGCAGTGACAGCATCAGCATCAATGCCCTTTTCGT
CCTCCTCCTCGTCCTTGCACCAGTACCACGACCACGTCGCCTGCTCCTCG
GACAGAGATGGTCTCGCCCCTGAATCATCCCTCCTGGATCGAAACCCATC
ACCCCCTCCCCCACCTCCCTTTGCAGCAGCTGCTCCTCGCACCGCTGCTG
CTGCTCTCCCGGCAGCAGCCGCAGCAAACGCAGCAGCCTCCTCCTCCTCC
TCCTCCTCCTTCCTCTTTTCGGACATCCATGACACTCACCGTTTAAGCGA
GACAAATGACAGCATTTCTCTGGAGTTGCCCCACTATGGAGCCCACACCC
TCCCTCCCCCACCTGTCGGTGACGGCAATTCTCCTCTGCCTCCCCTCCCT
CCTCCTTCTCGCCCTCCCCCTCCCACTCGAGCGACAACCGCCTACTCTAT
CCCCTCCCTCCCTCCATCTTCCTCGCACCTCTACCGCACCCACTCCTTCT
GCGGCACCAACGAATACCTTTCCCCAGAGCTCCTTCTCAACCAGGGTCAC
TCCCTCCCCGTCGACTGGTGGTGCCTCGGTCTCTGCCTCCATGAAATGCT
CACCCGCAAACACCCCTTCAAACCCCCCTCCACTTCTCCCTCCCTCCCGC
CCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCCCGCCGAG
ACCCTCCGAAACATTTGCGCCTTCCCTCCCTCCCTCCACCCCTCCCTCAG
CCCCTCAGCCCGTCTTCTCATTCTCGCCCTCCTTGATAAAAACCCTGACA
CTCGCCTAGGTGGTGTGGCGAGGCTCAAAGAGCATTCCTTTTTCGCTGGA
TTAAACTGGGAGGAGATCGAGAGGAAGGAGGTGGAGGCTCCCTATGTGCC
GGTGGTGAGGGGGCAGGAAGACACCCGATGTTTTTCTTGGGTGTATACGG
AGGGGAGAATGAGGCACAGCGAGGTGGTGTTCAGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAAGGAGAGGGATGGGG
GGGTAAGGAGGGAGGGATGATGTGTGGATCTGCGTTTGGGAAGGTGAGGG
GAATGTGCGGGGCCGGGACGGTGAGAGAAGGGGGGAGGAGGGGCAGAAGG
AAAGAGGGAGAATGGAAGGACAAGGATGATGGGGCGTGGGATGGTTTTGA
TTACGTTCGCTCTTCCTCCTTGGGTTTGTAA
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protein sequence of NO13G01510.1

>NO13G01510.1-protein ID=NO13G01510.1-protein|Name=NO13G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp
MKEEAARVYVAEIALAIEYMHGKGVIYRDLKPENILMGRDGHVKLTDLGL
ARHFVSEPPLHSLVDERGGDGEGRSWALNRDPKPENAVMGRDWHAKLSDV
MRREGGCGDGRDDPAEDNGADVERKGAGVNIVAAAAAVREPAAARLVPVP
AASAPAVAVAAAAAATPPPAAAAVTASASMPFSSSSSSLHQYHDHVACSS
DRDGLAPESSLLDRNPSPPPPPPFAAAAPRTAAAALPAAAAANAAASSSS
SSSFLFSDIHDTHRLSETNDSISLELPHYGAHTLPPPPVGDGNSPLPPLP
PPSRPPPPTRATTAYSIPSLPPSSSHLYRTHSFCGTNEYLSPELLLNQGH
SLPVDWWCLGLCLHEMLTRKHPFKPPSTSPSLPPSRPPSLPPSLPPSPAE
TLRNICAFPPSLHPSLSPSARLLILALLDKNPDTRLGGVARLKEHSFFAG
LNWEEIERKEVEAPYVPVVRGQEDTRCFSWVYTEGRMRHSEVVFREEEEE
EEEEEEEVEEEEGEGWGGKEGGMMCGSAFGKVRGMCGAGTVREGGRRGRR
KEGEWKDKDDGAWDGFDYVRSSSLGL*
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mRNA from alignment at chr13:451994..453724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01510.1 ID=NO13G01510.1|Name=NO13G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp|location=Sequence derived from alignment at chr13:451994..453724+ (Nannochloropsis oceanica)
ATGAAGGAGGAGGCGGCGAGGGTGTATGTCGCAGAAATTGCACTGGCGAT
TGAGTACATGCATGGGAAAGGGGTTATTTACAGAGACTTAAAGCCGGAGA
ATATATTGATGGGGAGGGATGGGCATGTGAAGTTAACGGATTTGGGGTTG
GCGCGGCATTTTGTAAGCGAGCCGCCGTTGCACTCACTCGTGGATGAAAG
AGGGGGTGATGGGGAGGGAAGAAGCTGGGCGCTTAATAGGGATCCAAAGC
CGGAGAATGCGGTAATGGGGAGGGATTGGCACGCGAAGCTGTCGGATGTG
ATGCGGAGGGAAGGAGGTTGTGGCGATGGACGCGATGATCCAGCGGAGGA
TAATGGGGCTGACGTTGAGAGAAAAGGTGCAGGGGTCAATATAGTGGCAG
CAGCTGCAGCAGTAAGAGAGCCAGCAGCTGCGAGGCTAGTACCAGTGCCG
GCTGCTTCGGCGCCTGCTGTTGCTGTTGCTGCTGCTGCTGCTGCTACCCC
TCCTCCTGCAGCAGCAGCAGTGACAGCATCAGCATCAATGCCCTTTTCGT
CCTCCTCCTCGTCCTTGCACCAGTACCACGACCACGTCGCCTGCTCCTCG
GACAGAGATGGTCTCGCCCCTGAATCATCCCTCCTGGATCGAAACCCATC
ACCCCCTCCCCCACCTCCCTTTGCAGCAGCTGCTCCTCGCACCGCTGCTG
CTGCTCTCCCGGCAGCAGCCGCAGCAAACGCAGCAGCCTCCTCCTCCTCC
TCCTCCTCCTTCCTCTTTTCGGACATCCATGACACTCACCGTTTAAGCGA
GACAAATGACAGCATTTCTCTGGAGTTGCCCCACTATGGAGCCCACACCC
TCCCTCCCCCACCTGTCGGTGACGGCAATTCTCCTCTGCCTCCCCTCCCT
CCTCCTTCTCGCCCTCCCCCTCCCACTCGAGCGACAACCGCCTACTCTAT
CCCCTCCCTCCCTCCATCTTCCTCGCACCTCTACCGCACCCACTCCTTCT
GCGGCACCAACGAATACCTTTCCCCAGAGCTCCTTCTCAACCAGGGTCAC
TCCCTCCCCGTCGACTGGTGGTGCCTCGGTCTCTGCCTCCATGAAATGCT
CACCCGCAAACACCCCTTCAAACCCCCCTCCACTTCTCCCTCCCTCCCGC
CCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCCCGCCGAG
ACCCTCCGAAACATTTGCGCCTTCCCTCCCTCCCTCCACCCCTCCCTCAG
CCCCTCAGCCCGTCTTCTCATTCTCGCCCTCCTTGATAAAAACCCTGACA
CTCGCCTAGGTGGTGTGGCGAGGCTCAAAGAGCATTCCTTTTTCGCTGGA
TTAAACTGGGAGGAGATCGAGAGGAAGGAGGTGGAGGCTCCCTATGTGCC
GGTGGTGAGGGGGCAGGAAGACACCCGATGTTTTTCTTGGGTGTATACGG
AGGGGAGAATGAGGCACAGCGAGGTGGTGTTCAGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAAGGAGAGGGATGGGG
GGGTAAGGAGGGAGGGATGATGTGTGGATCTGCGTTTGGGAAGGTGAGGG
GAATGTGCGGGGCCGGGACGGTGAGAGAAGGGGGGAGGAGGGGCAGAAGG
AAAGAGGGAGAATGGAAGGACAAGGATGATGGGGCGTGGGATGGTTTTGA
TTACGTTCGCTCTTCCTCCTTGGGTTTGTAA
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Coding sequence (CDS) from alignment at chr13:451994..453724+

>NO13G01510.1 ID=NO13G01510.1|Name=NO13G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=1731bp|location=Sequence derived from alignment at chr13:451994..453724+ (Nannochloropsis oceanica)
ATGAAGGAGGAGGCGGCGAGGGTGTATGTCGCAGAAATTGCACTGGCGAT
TGAGTACATGCATGGGAAAGGGGTTATTTACAGAGACTTAAAGCCGGAGA
ATATATTGATGGGGAGGGATGGGCATGTGAAGTTAACGGATTTGGGGTTG
GCGCGGCATTTTGTAAGCGAGCCGCCGTTGCACTCACTCGTGGATGAAAG
AGGGGGTGATGGGGAGGGAAGAAGCTGGGCGCTTAATAGGGATCCAAAGC
CGGAGAATGCGGTAATGGGGAGGGATTGGCACGCGAAGCTGTCGGATGTG
ATGCGGAGGGAAGGAGGTTGTGGCGATGGACGCGATGATCCAGCGGAGGA
TAATGGGGCTGACGTTGAGAGAAAAGGTGCAGGGGTCAATATAGTGGCAG
CAGCTGCAGCAGTAAGAGAGCCAGCAGCTGCGAGGCTAGTACCAGTGCCG
GCTGCTTCGGCGCCTGCTGTTGCTGTTGCTGCTGCTGCTGCTGCTACCCC
TCCTCCTGCAGCAGCAGCAGTGACAGCATCAGCATCAATGCCCTTTTCGT
CCTCCTCCTCGTCCTTGCACCAGTACCACGACCACGTCGCCTGCTCCTCG
GACAGAGATGGTCTCGCCCCTGAATCATCCCTCCTGGATCGAAACCCATC
ACCCCCTCCCCCACCTCCCTTTGCAGCAGCTGCTCCTCGCACCGCTGCTG
CTGCTCTCCCGGCAGCAGCCGCAGCAAACGCAGCAGCCTCCTCCTCCTCC
TCCTCCTCCTTCCTCTTTTCGGACATCCATGACACTCACCGTTTAAGCGA
GACAAATGACAGCATTTCTCTGGAGTTGCCCCACTATGGAGCCCACACCC
TCCCTCCCCCACCTGTCGGTGACGGCAATTCTCCTCTGCCTCCCCTCCCT
CCTCCTTCTCGCCCTCCCCCTCCCACTCGAGCGACAACCGCCTACTCTAT
CCCCTCCCTCCCTCCATCTTCCTCGCACCTCTACCGCACCCACTCCTTCT
GCGGCACCAACGAATACCTTTCCCCAGAGCTCCTTCTCAACCAGGGTCAC
TCCCTCCCCGTCGACTGGTGGTGCCTCGGTCTCTGCCTCCATGAAATGCT
CACCCGCAAACACCCCTTCAAACCCCCCTCCACTTCTCCCTCCCTCCCGC
CCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCCCGCCGAG
ACCCTCCGAAACATTTGCGCCTTCCCTCCCTCCCTCCACCCCTCCCTCAG
CCCCTCAGCCCGTCTTCTCATTCTCGCCCTCCTTGATAAAAACCCTGACA
CTCGCCTAGGTGGTGTGGCGAGGCTCAAAGAGCATTCCTTTTTCGCTGGA
TTAAACTGGGAGGAGATCGAGAGGAAGGAGGTGGAGGCTCCCTATGTGCC
GGTGGTGAGGGGGCAGGAAGACACCCGATGTTTTTCTTGGGTGTATACGG
AGGGGAGAATGAGGCACAGCGAGGTGGTGTTCAGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAAGGAGAGGGATGGGG
GGGTAAGGAGGGAGGGATGATGTGTGGATCTGCGTTTGGGAAGGTGAGGG
GAATGTGCGGGGCCGGGACGGTGAGAGAAGGGGGGAGGAGGGGCAGAAGG
AAAGAGGGAGAATGGAAGGACAAGGATGATGGGGCGTGGGATGGTTTTGA
TTACGTTCGCTCTTCCTCCTTGGGTTTGTAA
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Synonyms
Publications