NO13G01480.1, NO13G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01480.1
Unique NameNO13G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1113
Alignment locationchr13:444256..445674 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:444256..445674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01480.1 vs.
Match: EWM21810.1 (fatty-acyl elongase [Nannochloropsis gaditana])

HSP 1 Score: 486.1 bits (1250), Expect = 9.600e-134
Identity = 233/337 (69.14%), Postives = 280/337 (83.09%), Query Frame = 0 
Query:    5 SLPPWLWQDPTPLYKTSQYITRDPLNPRRFVQVFQSIPVLEPLYTEFEKKFNVKESYRIIRDNTWLPIIATILYLSFMIEGRKYVERRKLEGKGPVNLGRFPAFWNAFLASFSILGTLRVVPHLLFMFTHKNFRGTVCEPPDTAGYGDGAAGMWVMLFTVSKVFELVDTMILVLKGKNPMFLHWYHHVTVLLYTWFSYSARNPGIYFVAMNYSVHAVMYSYYFLTEIKLWPKWFNPMWITMAQISQMLAGVGITIASFLYARDPSCGVVRDMIPWCAGMYATYLYFFVLFFMERFWPSILNSSSSSSSSSSSSSSSSSSSSSSSSSSRRKWKELGRG 342
            +LP WLW+DP PLY +S+Y T DP +P RFVQVFQS+P LEP Y E+EK F+V  S+++IRDN  LPI+ATILYLSF+IEG+KY+ERR+ EGKGP+NLG FPAFWNAFLA+FS+LG  RVVPH LF+FTHK+F+ TVCE PD AGYGDGAAGMWVMLFTVSK+FELVDT+ILVLKGK+PMFLHWYHHVTVLLYTWFSYSARNPGIYFVAMNYSVHA+MYSYYFL E++LWPKWFNPMWITMAQI QML GVGIT+++F ++RDPSC +VR +IPWCA MYATYLYFFVLFF+ERF+P+   ++  ++   S   +  +           + +  G+G
Sbjct:    4 ALPAWLWRDPRPLYASSRYKTADPESPVRFVQVFQSLPWLEPFYMEWEKNFDVSSSFQVIRDNEALPIVATILYLSFLIEGKKYIERRRREGKGPINLGLFPAFWNAFLAAFSVLGATRVVPHFLFLFTHKDFKTTVCEAPDKAGYGDGAAGMWVMLFTVSKLFELVDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGIYFVAMNYSVHALMYSYYFLMELRLWPKWFNPMWITMAQILQMLVGVGITVSAFFFSRDPSCALVRGLIPWCAAMYATYLYFFVLFFLERFFPAFKPAAPGAARGLSGGKAGRTGGGGGGGEGGGRCRRRGKG 340
The following BLAST results are available for this feature:
BLAST of NO13G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21810.19.600e-13469.14fatty-acyl elongase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01480NO13G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01480.1NO13G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01480.1.cds1NO13G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01480.1.cds2NO13G01480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01480.1.cds3NO13G01480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01480.1 ID=NO13G01480.1|Name=NO13G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
ATGTCGGCAATGTCACTACCCCCGTGGCTATGGCAAGACCCCACCCCTCT
TTACAAAACAAGCCAGTATATCACTCGCGACCCCTTGAACCCGCGGCGGT
TCGTGCAAGTATTTCAATCCATCCCAGTCCTTGAACCGCTCTATACCGAG
TTTGAGAAAAAATTTAATGTGAAGGAATCGTATCGCATCATCCGGGACAA
CACCTGGCTGCCCATAATTGCCACCATTCTGTACCTCTCCTTCATGATCG
AAGGCCGAAAATACGTGGAACGCCGGAAGCTTGAGGGCAAAGGACCCGTG
AATCTGGGACGATTCCCAGCGTTCTGGAATGCTTTCCTGGCGTCGTTTTC
CATTCTAGGTACCTTGCGCGTAGTGCCGCATCTGTTGTTCATGTTCACGC
ATAAGAATTTCAGGGGGACGGTTTGCGAGCCGCCTGATACGGCGGGGTAT
GGTGATGGGGCGGCGGGGATGTGGGTGATGCTATTTACGGTTTCCAAGGT
CTTTGAATTGGTGGACACGATGATCTTGGTGTTGAAGGGGAAGAATCCTA
TGTTTCTGCATTGGTACCACCACGTGACGGTGCTCCTCTACACATGGTTC
TCCTACTCGGCTCGCAATCCCGGCATTTATTTCGTCGCCATGAACTACTC
CGTGCACGCCGTCATGTACTCCTACTACTTCCTGACGGAGATCAAGCTCT
GGCCGAAATGGTTCAACCCTATGTGGATCACCATGGCCCAAATATCGCAG
ATGCTTGCCGGGGTCGGTATCACCATCGCCTCGTTCCTCTACGCCCGTGA
CCCTTCCTGCGGAGTTGTTCGGGATATGATTCCCTGGTGCGCGGGGATGT
ACGCGACCTACCTGTACTTCTTCGTCTTGTTTTTCATGGAGCGTTTCTGG
CCGTCCATTTTGAATTCATCATCATCATCATCATCATCATCATCATCATC
ATCGTCATCGTCGTCGTCATCGTCGTCGTCGTCGTCGTCGTCAAGAAGAA
AATGGAAGGAGTTGGGACGGGGGGAGAATAATGAGGCAGGAACAGCTCCG
GCGGCTGGAGGGGTGGGAAGGAGGACAGCCACGAGGGGAGGAAAGTCTAG
GAAAGAAGAATAG
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protein sequence of NO13G01480.1

>NO13G01480.1-protein ID=NO13G01480.1-protein|Name=NO13G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MSAMSLPPWLWQDPTPLYKTSQYITRDPLNPRRFVQVFQSIPVLEPLYTE
FEKKFNVKESYRIIRDNTWLPIIATILYLSFMIEGRKYVERRKLEGKGPV
NLGRFPAFWNAFLASFSILGTLRVVPHLLFMFTHKNFRGTVCEPPDTAGY
GDGAAGMWVMLFTVSKVFELVDTMILVLKGKNPMFLHWYHHVTVLLYTWF
SYSARNPGIYFVAMNYSVHAVMYSYYFLTEIKLWPKWFNPMWITMAQISQ
MLAGVGITIASFLYARDPSCGVVRDMIPWCAGMYATYLYFFVLFFMERFW
PSILNSSSSSSSSSSSSSSSSSSSSSSSSSSRRKWKELGRGENNEAGTAP
AAGGVGRRTATRGGKSRKEE*
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mRNA from alignment at chr13:444256..445674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01480.1 ID=NO13G01480.1|Name=NO13G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at chr13:444256..445674+ (Nannochloropsis oceanica)
ATGTCGGCAATGTCACTACCCCCGTGGCTATGGCAAGACCCCACCCCTCT
TTACAAAACAAGCCAGTATATCACTCGCGACCCCTTGAACCCGCGGCGGT
TCGTGCAAGTATTTCAATCCATCCCAGTCCTTGAACCGCTCTATACCGAG
TTTGAGAAAAAATTTAATGTGAAGGAATCGTATCGCATCATCCGGGACAA
CACCTGGCTGCCCATAATTGCCACCATTCTGTACCTCTCCTTCATGATCG
AAGGCCGAAAATACGTGGAACGCCGGAAGCTTGAGGGCAAAGGACCCGTG
AATCTGGGACGATTCCCAGCGTTCTGGAATGCTTTCCTGGCGTCGTTTTC
CATTCTAGGTACCTTGCGCGTAGTGCCGCATCTGTTGTTCATGTTCACGC
ATAAGAATTTCAGGGGGACGGTTTGCGAGCCGCCTGATACGGCGGGGTAT
GGTGATGGGGCGGCGGGGATGTGGGTGATGCTATTTACGGTTTCCAAGGT
CTTTGAATTGGTGGACACGATGATCTTGGTGTTGAAGGGGAAGAATCCTA
TGTTTCTGCATTGGTGAGGAAGACGTGTGGGAGGAGGGAGGGAGGGATGG
AGGGATGGCGGGCGGGAAAAGCATTCGAAATATCACCATACTTATTCCAC
TCGTCGCTCTCTTCGTCCCGACTCTTCACCACAGGTACCACCACGTGACG
GTGCTCCTCTACACATGGTTCTCCTACTCGGCTCGCAATCCCGGCATTTA
TTTCGTCGCCATGAACTACTCCGTGCACGCCGTCATGTACTCCTACTACT
TCCTGACGGAGATCAAGCTCTGGCCGAAATGGTTCAAGTATGTGCCCTTC
TTTCCCTCTCGCTCTTCCTTACTCCCTCCCTTTCTCCTTCTTCCCTTCAT
TGCGTCATTCATTTCCACAAGGATCCCCCTTCCTTCCACCCACCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCAGCCCTATGTGGATCACCATGGCCCAAATA
TCGCAGATGCTTGCCGGGGTCGGTATCACCATCGCCTCGTTCCTCTACGC
CCGTGACCCTTCCTGCGGAGTTGTTCGGGATATGATTCCCTGGTGCGCGG
GGATGTACGCGACCTACCTGTACTTCTTCGTCTTGTTTTTCATGGAGCGT
TTCTGGCCGTCCATTTTGAATTCATCATCATCATCATCATCATCATCATC
ATCATCATCGTCATCGTCGTCGTCATCGTCGTCGTCGTCGTCGTCGTCAA
GAAGAAAATGGAAGGAGTTGGGACGGGGGGAGAATAATGAGGCAGGAACA
GCTCCGGCGGCTGGAGGGGTGGGAAGGAGGACAGCCACGAGGGGAGGAAA
GTCTAGGAAAGAAGAATAG
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Coding sequence (CDS) from alignment at chr13:444256..445674+

>NO13G01480.1 ID=NO13G01480.1|Name=NO13G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr13:444256..445674+ (Nannochloropsis oceanica)
ATGTCGGCAATGTCACTACCCCCGTGGCTATGGCAAGACCCCACCCCTCT
TTACAAAACAAGCCAGTATATCACTCGCGACCCCTTGAACCCGCGGCGGT
TCGTGCAAGTATTTCAATCCATCCCAGTCCTTGAACCGCTCTATACCGAG
TTTGAGAAAAAATTTAATGTGAAGGAATCGTATCGCATCATCCGGGACAA
CACCTGGCTGCCCATAATTGCCACCATTCTGTACCTCTCCTTCATGATCG
AAGGCCGAAAATACGTGGAACGCCGGAAGCTTGAGGGCAAAGGACCCGTG
AATCTGGGACGATTCCCAGCGTTCTGGAATGCTTTCCTGGCGTCGTTTTC
CATTCTAGGTACCTTGCGCGTAGTGCCGCATCTGTTGTTCATGTTCACGC
ATAAGAATTTCAGGGGGACGGTTTGCGAGCCGCCTGATACGGCGGGGTAT
GGTGATGGGGCGGCGGGGATGTGGGTGATGCTATTTACGGTTTCCAAGGT
CTTTGAATTGGTGGACACGATGATCTTGGTGTTGAAGGGGAAGAATCCTA
TGTTTCTGCATTGGTACCACCACGTGACGGTGCTCCTCTACACATGGTTC
TCCTACTCGGCTCGCAATCCCGGCATTTATTTCGTCGCCATGAACTACTC
CGTGCACGCCGTCATGTACTCCTACTACTTCCTGACGGAGATCAAGCTCT
GGCCGAAATGGTTCAACCCTATGTGGATCACCATGGCCCAAATATCGCAG
ATGCTTGCCGGGGTCGGTATCACCATCGCCTCGTTCCTCTACGCCCGTGA
CCCTTCCTGCGGAGTTGTTCGGGATATGATTCCCTGGTGCGCGGGGATGT
ACGCGACCTACCTGTACTTCTTCGTCTTGTTTTTCATGGAGCGTTTCTGG
CCGTCCATTTTGAATTCATCATCATCATCATCATCATCATCATCATCATC
ATCGTCATCGTCGTCGTCATCGTCGTCGTCGTCGTCGTCGTCAAGAAGAA
AATGGAAGGAGTTGGGACGGGGGGAGAATAATGAGGCAGGAACAGCTCCG
GCGGCTGGAGGGGTGGGAAGGAGGACAGCCACGAGGGGAGGAAAGTCTAG
GAAAGAAGAATAG
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Synonyms
Publications