NO13G01450.1, NO13G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01450.1
Unique NameNO13G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr13:433608..435234 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:433608..435234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01450.1 vs.
Match: XP_005853659.1 (hypothetical protein NGA_0273102 [Nannochloropsis gaditana CCMP526]; EKU22700.1 hypothetical protein NGA_0273102 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 489.2 bits (1258), Expect = 1.400e-134
Identity = 247/384 (64.32%), Postives = 294/384 (76.56%), Query Frame = 0 
Query:   85 TMARSLMVAVKALNQAQITLRTVSTHAASVSTNTVAGKTRVLSSTATPTPVCDTTTTPSSPK-KVSWLSALFGDSGSSQPKVHRPFGVHEKAHLKLATRKKDKVMQTNPGARVEPEFLPEIESHRLVEEALDVIKKYGISHVSEEQRIEMAHQLKHFPLPKADLKELVNMQRVTGRFEDAAQTLAPWGYGDDFNIEQVPPALRSMLERIQASPHFCLGKPRDITLNHRENYFYRLDPHIDPVDDGGNVFILGLLSGTVLTLSPTSRTMHPDQHKAMDPRRVAEVSWLPGKDIDVDLPARTLLHLSGDARYSWCHGIRLGVTHPQIEDYYLGAELPEEARVLGGEQKG-----EVPLWDWWGNMKNLRRRGPERLSIIFAFSDPE 463
            ++A + + + KA  Q   +  T S  A    T+      RV + +   +     +T  ++PK   SWLSALFG  G+S+PK HRPFG HE+AHL+LATRK +K+++ NPGARVEP+FL E ++  LVEEA+DVI  YGISHVSEEQR  +A+QLKHFPLPK DL+ LVNMQRVTGRFED AQ LAPWGYGDDF ++QVPPALR +LE IQ SPHFC+GKPRDIT+N RE  FYRLDPHIDP  DGGNVFIL LLSGTV+TL+PTSRTMHPDQHKAMD R+VAEVSWLPGKDIDVDLP  +LLHLSGDARY+WCHGIR GVT  QI D+ LG  + +E    G +Q+       +PLWDWWG+MKNLRRRGPER+SIIFAF+DPE
Sbjct:    6 SLAAAKVASNKAALQRVTSDLTASPIAYFARTSRFDPSARVHAGSRFQSTYAKASTNLTAPKVTTSWLSALFG-GGNSKPKAHRPFGRHEEAHLRLATRKTNKILKANPGARVEPKFLSEEDAQMLVEEAMDVINIYGISHVSEEQRDFLANQLKHFPLPKEDLRALVNMQRVTGRFEDEAQKLAPWGYGDDFQVDQVPPALRKVLESIQDSPHFCVGKPRDITINRREKSFYRLDPHIDPAKDGGNVFILSLLSGTVMTLTPTSRTMHPDQHKAMDTRKVAEVSWLPGKDIDVDLPVLSLLHLSGDARYTWCHGIRPGVTQSQISDFNLGGVMSDEME--GVDQEAVRTLEGLPLWDWWGSMKNLRRRGPERVSIIFAFADPE 386
The following BLAST results are available for this feature:
BLAST of NO13G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853659.11.400e-13464.32hypothetical protein NGA_0273102 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01450NO13G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01450.1NO13G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01450.1.cds1NO13G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01450.1.cds2NO13G01450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01450.1 ID=NO13G01450.1|Name=NO13G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp
ATGGCGACACCACTTGTGATGATGGATGCGCTAGAGAAGCGGATATACCC
CGTTATTCGAGAAGCAACAACCAGGGACCACGTGCCTTACAATGCCCTTC
TTGCTCATCACAATGTTCCCAAACACACATTCCACAGCCCCCCACGCCAT
TGCATCTGGTACGAACTCCCCACCACCAGCCACAAGCACGCCACGGTGTT
GAGAGATATCCAAGGGTTTGCCGCAGAGTTCTCGTGCAGCAGCACGTACC
GGACCATGGCCAGATCTCTTATGGTGGCCGTCAAGGCCCTAAATCAGGCG
CAAATTACCCTCAGAACCGTGAGTACTCATGCGGCTTCAGTGTCTACAAA
CACCGTTGCCGGCAAAACCAGAGTACTTAGCAGCACTGCGACCCCCACTC
CTGTTTGCGACACAACTACTACTCCTTCCTCCCCAAAAAAGGTCTCCTGG
CTTAGCGCCCTTTTTGGTGACAGTGGCTCGTCCCAGCCTAAGGTGCATCG
CCCCTTTGGTGTCCACGAAAAGGCACACTTGAAGTTAGCTACGCGCAAAA
AAGACAAAGTCATGCAAACCAACCCCGGAGCACGCGTTGAGCCCGAATTT
CTCCCTGAAATCGAATCACATAGGTTGGTAGAGGAAGCGCTCGACGTAAT
TAAGAAGTATGGGATTTCGCATGTGAGTGAGGAGCAACGGATTGAGATGG
CGCATCAGCTGAAGCATTTTCCTTTGCCGAAGGCTGACTTGAAGGAATTG
GTCAATATGCAGCGTGTCACGGGGCGCTTCGAAGACGCCGCTCAAACCCT
GGCTCCTTGGGGGTACGGAGACGACTTCAACATTGAACAGGTTCCTCCCG
CGCTACGCAGCATGCTTGAGCGCATTCAAGCCTCACCGCATTTTTGTTTG
GGAAAGCCCCGGGATATTACCTTGAACCATCGCGAGAATTATTTCTATCG
TCTAGACCCTCATATTGACCCTGTCGATGATGGGGGAAATGTCTTCATCT
TGGGGCTGTTGTCAGGGACGGTCTTGACCTTATCGCCGACCAGTAGAACA
ATGCACCCGGATCAGCACAAAGCGATGGACCCAAGAAGAGTGGCTGAAGT
GTCGTGGTTACCTGGGAAGGATATTGATGTTGACTTGCCTGCACGGACCT
TGTTGCATTTGAGTGGTGATGCGCGATATAGCTGGTGTCATGGCATACGT
CTAGGGGTGACCCATCCGCAGATTGAGGATTACTATTTGGGGGCGGAATT
ACCAGAAGAGGCAAGAGTGCTGGGGGGAGAGCAGAAGGGAGAAGTCCCTT
TGTGGGATTGGTGGGGGAACATGAAGAATTTGAGACGACGGGGCCCGGAA
CGACTGAGCATTATTTTTGCCTTCTCGGATCCGGAATAGAATTGAGAGGG
CAGCGGACTCGGTGTGTGCACTCGTAAGTGTAGAAAGAAAGTGAAAAACA
TTGAGAGTGTTGGT
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protein sequence of NO13G01450.1

>NO13G01450.1-protein ID=NO13G01450.1-protein|Name=NO13G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MATPLVMMDALEKRIYPVIREATTRDHVPYNALLAHHNVPKHTFHSPPRH
CIWYELPTTSHKHATVLRDIQGFAAEFSCSSTYRTMARSLMVAVKALNQA
QITLRTVSTHAASVSTNTVAGKTRVLSSTATPTPVCDTTTTPSSPKKVSW
LSALFGDSGSSQPKVHRPFGVHEKAHLKLATRKKDKVMQTNPGARVEPEF
LPEIESHRLVEEALDVIKKYGISHVSEEQRIEMAHQLKHFPLPKADLKEL
VNMQRVTGRFEDAAQTLAPWGYGDDFNIEQVPPALRSMLERIQASPHFCL
GKPRDITLNHRENYFYRLDPHIDPVDDGGNVFILGLLSGTVLTLSPTSRT
MHPDQHKAMDPRRVAEVSWLPGKDIDVDLPARTLLHLSGDARYSWCHGIR
LGVTHPQIEDYYLGAELPEEARVLGGEQKGEVPLWDWWGNMKNLRRRGPE
RLSIIFAFSDPE*
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mRNA from alignment at chr13:433608..435234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01450.1 ID=NO13G01450.1|Name=NO13G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp|location=Sequence derived from alignment at chr13:433608..435234- (Nannochloropsis oceanica)
ATGGCGACACCACTTGTGATGATGGATGCGCTAGAGAAGCGGATATACCC
CGTTATTCGAGAAGCAACAACCAGGGACCACGTGCCTTACAATGCCCTTC
TTGCTCATCACAATGTTCCCAAACACACATTCCACAGCCCCCCACGCCAT
TGCATCTGGTACGAACTCCCCACCACCAGCCACAAGCACGCCACGGTGTT
GAGAGATATCCAAGGGTTTGCCGCAGAGTTCTCGTGCAGCAGCACGTACC
GGACCATGGCCAGATCTCTTATGGTGGCCGTCAAGGCCCTAAATCAGGCG
CAAATTACCCTCAGAACCGTGAGTACTCATGCGGCTTCAGTGTCTACAAA
CACCGTTGCCGGCAAAACCAGAGTACTTAGCAGCACTGCGACCCCCACTC
CTGTTTGCGACACAACTACTACTCCTTCCTCCCCAAAAAAGGTCTCCTGG
CTTAGCGCCCTTTTTGGTGACAGTGGCTCGTCCCAGCCTAAGGTGCATCG
CCCCTTTGGTGTCCACGAAAAGGCACACTTGAAGTTAGCTACGCGCAAAA
AAGACAAAGTCATGCAAACCAACCCCGGAGCACGCGTTGAGCCCGAATTT
CTCCCTGAAATCGAATCACATAGGTTGGTAGAGGAAGCGCTCGACGTAAT
TAAGAAGTATGGGATTTCGCATGTGAGTGAGGAGCAACGGATTGAGATGG
CGCATCAGCTGAAGCATTTTCCTTTGCCGAAGGCTGACTTGAAGGAATTG
GTCAATATGCAGCGTGTCACGGGGGTAAGTGCTGCATACGAGGTGGATAG
AAAGATAGAAAACACGAAAAAGGGAGAGTGTGTGTGGCTAGAGGCGCTAT
GGATAGGATAGCAACGGCTTGATTCAGGACTCAACTTCTCAATTTTCTCC
TCCCTTCCTTTTCACCCTCCACTTTCCTCCCTCCCAGCGCTTCGAAGACG
CCGCTCAAACCCTGGCTCCTTGGGGGTACGGAGACGACTTCAACATTGAA
CAGGTTCCTCCCGCGCTACGCAGCATGCTTGAGCGCATTCAAGCCTCACC
GCATTTTTGTTTGGGAAAGCCCCGGGATATTACCTTGAACCATCGCGAGA
ATTATTTCTATCGTCTAGACCCTCATATTGACCCTGTCGATGATGGGGGA
AATGTCTTCATCTTGGGGCTGTTGTCAGGGACGGTCTTGACCTTATCGCC
GACCAGTAGAACAATGCACCCGGATCAGCACAAAGCGATGGACCCAAGAA
GAGTGGCTGAAGTGTCGTGGTTACCTGGGAAGGATATTGATGTTGACTTG
CCTGCACGGACCTTGTTGCATTTGAGTGGTGATGCGCGATATAGCTGGTG
TCATGGCATACGTCTAGGGGTGACCCATCCGCAGATTGAGGATTACTATT
TGGGGGCGGAATTACCAGAAGAGGCAAGAGTGCTGGGGGGAGAGCAGAAG
GGAGAAGTCCCTTTGTGGGATTGGTGGGGGAACATGAAGAATTTGAGACG
ACGGGGCCCGGAACGACTGAGCATTATTTTTGCCTTCTCGGATCCGGAAT
AGAATTGAGAGGGCAGCGGACTCGGTGTGTGCACTCGTAAGTGTAGAAAG
AAAGTGAAAAACATTGAGAGTGTTGGT
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Coding sequence (CDS) from alignment at chr13:433608..435234-

>NO13G01450.1 ID=NO13G01450.1|Name=NO13G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr13:433608..435234- (Nannochloropsis oceanica)
ATGGCGACACCACTTGTGATGATGGATGCGCTAGAGAAGCGGATATACCC
CGTTATTCGAGAAGCAACAACCAGGGACCACGTGCCTTACAATGCCCTTC
TTGCTCATCACAATGTTCCCAAACACACATTCCACAGCCCCCCACGCCAT
TGCATCTGGTACGAACTCCCCACCACCAGCCACAAGCACGCCACGGTGTT
GAGAGATATCCAAGGGTTTGCCGCAGAGTTCTCGTGCAGCAGCACGTACC
GGACCATGGCCAGATCTCTTATGGTGGCCGTCAAGGCCCTAAATCAGGCG
CAAATTACCCTCAGAACCGTGAGTACTCATGCGGCTTCAGTGTCTACAAA
CACCGTTGCCGGCAAAACCAGAGTACTTAGCAGCACTGCGACCCCCACTC
CTGTTTGCGACACAACTACTACTCCTTCCTCCCCAAAAAAGGTCTCCTGG
CTTAGCGCCCTTTTTGGTGACAGTGGCTCGTCCCAGCCTAAGGTGCATCG
CCCCTTTGGTGTCCACGAAAAGGCACACTTGAAGTTAGCTACGCGCAAAA
AAGACAAAGTCATGCAAACCAACCCCGGAGCACGCGTTGAGCCCGAATTT
CTCCCTGAAATCGAATCACATAGGTTGGTAGAGGAAGCGCTCGACGTAAT
TAAGAAGTATGGGATTTCGCATGTGAGTGAGGAGCAACGGATTGAGATGG
CGCATCAGCTGAAGCATTTTCCTTTGCCGAAGGCTGACTTGAAGGAATTG
GTCAATATGCAGCGTGTCACGGGGCGCTTCGAAGACGCCGCTCAAACCCT
GGCTCCTTGGGGGTACGGAGACGACTTCAACATTGAACAGGTTCCTCCCG
CGCTACGCAGCATGCTTGAGCGCATTCAAGCCTCACCGCATTTTTGTTTG
GGAAAGCCCCGGGATATTACCTTGAACCATCGCGAGAATTATTTCTATCG
TCTAGACCCTCATATTGACCCTGTCGATGATGGGGGAAATGTCTTCATCT
TGGGGCTGTTGTCAGGGACGGTCTTGACCTTATCGCCGACCAGTAGAACA
ATGCACCCGGATCAGCACAAAGCGATGGACCCAAGAAGAGTGGCTGAAGT
GTCGTGGTTACCTGGGAAGGATATTGATGTTGACTTGCCTGCACGGACCT
TGTTGCATTTGAGTGGTGATGCGCGATATAGCTGGTGTCATGGCATACGT
CTAGGGGTGACCCATCCGCAGATTGAGGATTACTATTTGGGGGCGGAATT
ACCAGAAGAGGCAAGAGTGCTGGGGGGAGAGCAGAAGGGAGAAGTCCCTT
TGTGGGATTGGTGGGGGAACATGAAGAATTTGAGACGACGGGGCCCGGAA
CGACTGAGCATTATTTTTGCCTTCTCGGATCCGGAATAG
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Synonyms
Publications