NO13G01340.1, NO13G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01340.1
Unique NameNO13G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1185
Alignment locationchr13:406625..407940 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:406625..407940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01340.1 vs.
Match: EWM21789.1 (hypothetical protein Naga_100065g20 [Nannochloropsis gaditana])

HSP 1 Score: 584.7 bits (1506), Expect = 2.100e-163
Identity = 311/404 (76.98%), Postives = 342/404 (84.65%), Query Frame = 0 
Query:    1 MRSISL--ALVLLGSAALSQLGSAALPQAPLRRGNQDVEQALRTRE----PPAP--VSSPLPAPAL----PHANLKAVAILSAAVGSWAVLRAPEVRTWFQDVSPLHSKYFPLSRHQVLIFLAWLTNKIAVRVPGRSDGKSWKDAMASPVRFFTPSGYAFAIWAPIFLGELMLTFYQLGSSRLAPALHPYLARIAPPLAQAFAAQSLWCLAFRPWVGRMQFVPTALLAMTAVGLSRVHTILREGVAAGAMRPWDYVIVHLPLSLHFGWITCATLVNLNGWFAVAPSLRTGDKLGLALASVNVAVTLGGQITLASGDPVIALVVAWALYAVADDLLPSKSILRKNGLVGDDALDCLEISARVSAFLQAGLAGAVMLWKLLLRAGVVAPGDAVRLMTAAYEPVKSL 393
            MR+ISL  A++L+   A++ L  A+  Q+P R     V      R     PPAP  V +P PA  L    P+ANL+A+AILSAA GSWAVLRAP VR WF DV PL  KYFPL+RHQVLI LAWLTNKIAVR+PGRSDGKSWKDAM+SPVRFFTPS YAFAIWAPIFLGE +LTFYQL S+RLAPAL PYLAR+APPLAQA AAQSLWC+AFRPWVGRMQFVP+ALLAMTAVGLSRVHT+LRE VAAGAMRPWDY+IVHLPLSLHFGWITCATLVNLNGWFAVAP+LRTGDKLGLALAS+NVAVTLG Q+TLASGDPVIALVVAWALYAVA DL PS+S+LRKN LV DDALDCLEISARVSAFLQAGLAGAVM+WK+LL+AGVV PGDA RLM  A  PVK+L
Sbjct:    1 MRNISLCLAILLVAGCAVATLPHASPGQSPDRIPLLGVCGGRWGRTAPTPPPAPEVVETPSPAQPLSLASPYANLRALAILSAAAGSWAVLRAPNVREWFDDVRPLQPKYFPLARHQVLILLAWLTNKIAVRIPGRSDGKSWKDAMSSPVRFFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVGRMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDLAPSRSLLRKNKLVDDDALDCLEISARVSAFLQAGLAGAVMVWKVLLKAGVVVPGDAKRLMAVAMGPVKTL 404
The following BLAST results are available for this feature:
BLAST of NO13G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21789.12.100e-16376.98hypothetical protein Naga_100065g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01340NO13G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01340.1NO13G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01340.1.cds1NO13G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01340.1.cds2NO13G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01340.1 ID=NO13G01340.1|Name=NO13G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ATGCGCAGCATCTCTTTAGCCCTTGTCTTGCTCGGAAGTGCTGCCTTATC
CCAGCTTGGGAGTGCTGCCTTACCCCAAGCACCCCTTCGTCGGGGCAACC
AAGACGTCGAGCAAGCCCTGCGCACTCGGGAGCCCCCTGCCCCAGTCTCT
TCACCCCTCCCCGCGCCCGCCTTGCCACACGCGAACCTAAAAGCAGTTGC
AATCCTTAGCGCCGCCGTGGGATCCTGGGCAGTGCTGCGAGCACCGGAAG
TACGCACATGGTTCCAAGACGTGAGCCCGTTGCACTCGAAATACTTTCCC
TTGTCCCGGCATCAAGTCCTCATCTTCCTTGCCTGGCTAACCAACAAGAT
CGCCGTCCGTGTCCCCGGTCGATCTGATGGCAAGAGCTGGAAAGACGCCA
TGGCTTCGCCTGTGCGTTTCTTTACTCCTTCTGGCTATGCATTTGCGATT
TGGGCCCCCATCTTCCTTGGGGAGCTCATGTTGACTTTTTACCAACTCGG
GTCAAGCCGTCTCGCCCCTGCCCTCCACCCGTACCTCGCCAGGATTGCCC
CTCCATTGGCGCAGGCCTTTGCGGCACAGAGCCTGTGGTGTTTGGCGTTT
CGGCCATGGGTTGGGCGGATGCAATTTGTGCCAACAGCATTGCTGGCAAT
GACAGCAGTGGGCTTGTCACGCGTGCATACCATCTTGAGGGAAGGTGTCG
CGGCGGGTGCGATGCGGCCGTGGGATTATGTAATTGTGCATTTGCCTTTG
TCGCTTCACTTTGGCTGGATCACCTGCGCAACGCTCGTTAATTTGAATGG
GTGGTTTGCGGTTGCCCCCTCTCTGAGGACAGGAGACAAGCTGGGACTTG
CCCTCGCCTCGGTCAATGTCGCCGTAACATTGGGTGGACAAATCACTCTC
GCGTCGGGCGATCCCGTTATTGCGCTGGTGGTGGCCTGGGCCCTCTACGC
AGTGGCAGATGACTTGCTACCATCCAAGTCGATCTTGAGAAAGAATGGTC
TGGTGGGCGATGATGCACTGGATTGCCTGGAGATCTCGGCGCGGGTCTCG
GCGTTTCTGCAGGCAGGGTTGGCTGGTGCAGTGATGTTGTGGAAGCTGCT
ACTTAGGGCTGGCGTGGTGGCTCCTGGAGATGCGGTTAGATTGATGACTG
CGGCATATGAACCGGTAAAATCTCTTTTCACATGA
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protein sequence of NO13G01340.1

>NO13G01340.1-protein ID=NO13G01340.1-protein|Name=NO13G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MRSISLALVLLGSAALSQLGSAALPQAPLRRGNQDVEQALRTREPPAPVS
SPLPAPALPHANLKAVAILSAAVGSWAVLRAPEVRTWFQDVSPLHSKYFP
LSRHQVLIFLAWLTNKIAVRVPGRSDGKSWKDAMASPVRFFTPSGYAFAI
WAPIFLGELMLTFYQLGSSRLAPALHPYLARIAPPLAQAFAAQSLWCLAF
RPWVGRMQFVPTALLAMTAVGLSRVHTILREGVAAGAMRPWDYVIVHLPL
SLHFGWITCATLVNLNGWFAVAPSLRTGDKLGLALASVNVAVTLGGQITL
ASGDPVIALVVAWALYAVADDLLPSKSILRKNGLVGDDALDCLEISARVS
AFLQAGLAGAVMLWKLLLRAGVVAPGDAVRLMTAAYEPVKSLFT*
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mRNA from alignment at chr13:406625..407940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01340.1 ID=NO13G01340.1|Name=NO13G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp|location=Sequence derived from alignment at chr13:406625..407940- (Nannochloropsis oceanica)
ATGCGCAGCATCTCTTTAGCCCTTGTCTTGCTCGGAAGTGCTGCCTTATC
CCAGCTTGGGAGTGCTGCCTTACCCCAAGCACCCCTTCGTCGGGGCAACC
AAGACGTCGAGCAAGCCCTGCGCACTCGGGGTGGGGGCTGGAGAAGCAAA
CAGCCCCCCCCCCCCTCCCCCCATGAAATTGTAGAGCCCCCTGCCCCAGT
CTCTTGTGGTGGGGGCTGGAGAAGCAAACAGCCCCCCCCCCCTCCCCCCA
TGAAATTGTAGAGCCCCCTGCCCCAGTCTCTTCACCCCTCCCCGCGCCCG
CCTTGCCACACGCGAACCTAAAAGCAGTTGCAATCCTTAGCGCCGCCGTG
GGATCCTGGGCAGTGCTGCGAGCACCGGAAGTACGCACATGGTTCCAAGA
CGTGAGCCCGTTGCACTCGAAATACTTTCCCTTGTCCCGGCATCAAGTCC
TCATCTTCCTTGCCTGGCTAACCAACAAGATCGCCGTCCGTGTCCCCGGT
CGATCTGATGGCAAGAGCTGGAAAGACGCCATGGCTTCGCCTGTGCGTTT
CTTTACTCCTTCTGGCTATGCATTTGCGATTTGGGCCCCCATCTTCCTTG
GGGAGCTCATGTTGACTTTTTACCAACTCGGGTCAAGCCGTCTCGCCCCT
GCCCTCCACCCGTACCTCGCCAGGATTGCCCCTCCATTGGCGCAGGCCTT
TGCGGCACAGAGCCTGTGGTGTTTGGCGTTTCGGCCATGGGTTGGGCGGA
TGCAATTTGTGCCAACAGCATTGCTGGCAATGACAGCAGTGGGCTTGTCA
CGCGTGCATACCATCTTGAGGGAAGGTGTCGCGGCGGGTGCGATGCGGCC
GTGGGATTATGTAATTGTGCATTTGCCTTTGTCGCTTCACTTTGGCTGGA
TCACCTGCGCAACGCTCGTTAATTTGAATGGGTGGTTTGCGGTTGCCCCC
TCTCTGAGGACAGGAGACAAGCTGGGACTTGCCCTCGCCTCGGTCAATGT
CGCCGTAACATTGGGTGGACAAATCACTCTCGCGTCGGGCGATCCCGTTA
TTGCGCTGGTGGTGGCCTGGGCCCTCTACGCAGTGGCAGATGACTTGCTA
CCATCCAAGTCGATCTTGAGAAAGAATGGTCTGGTGGGCGATGATGCACT
GGATTGCCTGGAGATCTCGGCGCGGGTCTCGGCGTTTCTGCAGGCAGGGT
TGGCTGGTGCAGTGATGTTGTGGAAGCTGCTACTTAGGGCTGGCGTGGTG
GCTCCTGGAGATGCGGTTAGATTGATGACTGCGGCATATGAACCGGTAAA
ATCTCTTTTCACATGA
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Coding sequence (CDS) from alignment at chr13:406625..407940-

>NO13G01340.1 ID=NO13G01340.1|Name=NO13G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr13:406625..407940- (Nannochloropsis oceanica)
ATGCGCAGCATCTCTTTAGCCCTTGTCTTGCTCGGAAGTGCTGCCTTATC
CCAGCTTGGGAGTGCTGCCTTACCCCAAGCACCCCTTCGTCGGGGCAACC
AAGACGTCGAGCAAGCCCTGCGCACTCGGGAGCCCCCTGCCCCAGTCTCT
TCACCCCTCCCCGCGCCCGCCTTGCCACACGCGAACCTAAAAGCAGTTGC
AATCCTTAGCGCCGCCGTGGGATCCTGGGCAGTGCTGCGAGCACCGGAAG
TACGCACATGGTTCCAAGACGTGAGCCCGTTGCACTCGAAATACTTTCCC
TTGTCCCGGCATCAAGTCCTCATCTTCCTTGCCTGGCTAACCAACAAGAT
CGCCGTCCGTGTCCCCGGTCGATCTGATGGCAAGAGCTGGAAAGACGCCA
TGGCTTCGCCTGTGCGTTTCTTTACTCCTTCTGGCTATGCATTTGCGATT
TGGGCCCCCATCTTCCTTGGGGAGCTCATGTTGACTTTTTACCAACTCGG
GTCAAGCCGTCTCGCCCCTGCCCTCCACCCGTACCTCGCCAGGATTGCCC
CTCCATTGGCGCAGGCCTTTGCGGCACAGAGCCTGTGGTGTTTGGCGTTT
CGGCCATGGGTTGGGCGGATGCAATTTGTGCCAACAGCATTGCTGGCAAT
GACAGCAGTGGGCTTGTCACGCGTGCATACCATCTTGAGGGAAGGTGTCG
CGGCGGGTGCGATGCGGCCGTGGGATTATGTAATTGTGCATTTGCCTTTG
TCGCTTCACTTTGGCTGGATCACCTGCGCAACGCTCGTTAATTTGAATGG
GTGGTTTGCGGTTGCCCCCTCTCTGAGGACAGGAGACAAGCTGGGACTTG
CCCTCGCCTCGGTCAATGTCGCCGTAACATTGGGTGGACAAATCACTCTC
GCGTCGGGCGATCCCGTTATTGCGCTGGTGGTGGCCTGGGCCCTCTACGC
AGTGGCAGATGACTTGCTACCATCCAAGTCGATCTTGAGAAAGAATGGTC
TGGTGGGCGATGATGCACTGGATTGCCTGGAGATCTCGGCGCGGGTCTCG
GCGTTTCTGCAGGCAGGGTTGGCTGGTGCAGTGATGTTGTGGAAGCTGCT
ACTTAGGGCTGGCGTGGTGGCTCCTGGAGATGCGGTTAGATTGATGACTG
CGGCATATGAACCGGTAAAATCTCTTTTCACATGA
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Synonyms
Publications