NO13G01270.1, NO13G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01270.1
Unique NameNO13G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1716
Alignment locationchr13:384593..386308 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:384593..386308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01270.1 vs.
Match: CBN76613.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 582.8 bits (1501), Expect = 1.200e-162
Identity = 333/600 (55.50%), Postives = 402/600 (67.00%), Query Frame = 0 
Query:    6 ATAVAAASTVTKEGLRGFTIVVAATAKSLGIGKQGQLPWNLPEDMAHFKHLTSS----------TTLPNKTNAVIMGRRTWQSIPERFRPLRNRLNVVLSRNPAIREQLNLPQGVRVAASLPEALALLSTGEDATAVEKVFVIGGAAVYKEALSSDLCEAIEFTAIDEEGQEGGQGGEREISNNSPTPLFADCDAFFPTIPATVYGLVTSTETLTQNHLHFRFQRFERLNY----RALPPFYGSSSSSSSNNHNNNNNNNNNNNNNNNNNNNNKTKGSASAPAGGG-----------------KKEEE---RNEEEQQYLDLVREIIEKGNHRGDRTQTGTLSKFGAQLRFSLRNNVFPLLTTKRVFWRGVAEELLWFVSGKTNSNLLKDKKIGIWDGNSSREYLDKIGLSNREEGDLGPVYGFQWRHFGAEYKDMHADYTGKGIDQLANAIETIKKNPEDRRIIVSAWNPSDLGKMALPPCHMFCQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTSLVAQVCGLAPGEFVHTIGDAHVYSNHVEALKEQLTRTPAKFPRLFINPDKKCIDDFVFEDFRIEGYTPQENIKMKMAV 572
            A++VA AS  T    R F ++VAATA SLGIGK G LPW L  DMA+FK  TS+          TT  +K NAVIMGR+TWQSIPERFRPL  R NVVLSRNPA R+ L LP+ V +A SL EAL LLS    A+ V+KVFVIGG +VY EA++S+LCE +  T++                       F DCD  FP +    + LV   E   +  +   F  +E +N+     A+    G   ++S+ +   +   ++ + +            +A+A  GG                  ++E E    NEEE QYL+LV +I++ G  RGDRT TGTLSKFG Q+RFSLR   FPLLTTKRVFWRGVAEELLWFV+G TN+N+LK++ I IWDGN SRE+LD +GL+ REEGDLGPVYGFQWRHFGAEY DMHADYTGKG+DQLA  I+ IK NPEDRRI++SAWNP+DLGKMALPPCHMFCQFYVA GELSCQMYQRSADMGLGVPFNIASYALLT LVAQ CGL  G+FVHTIGDAHVY NHV+AL+EQL R P  FP L IN D+  ID F ++   ++GY+P + IKMKMAV
Sbjct:    2 ASSVAVASPSTS---RSFVVIVAATAGSLGIGKNGALPWRLAADMAYFKRCTSTPTTSSGTTTATTTTDKINAVIMGRKTWQSIPERFRPLAGRRNVVLSRNPAARDTLRLPKDVLLAGSLTEALDLLSPAA-ASEVDKVFVIGGGSVYAEAVASELCEKVLLTSVTPPAD----------------GRFDDCDTHFPALDPDTFKLVKKGEAQEEKGVELSFDEYESVNHSEAAAAMAAAEGDKENASAASVVGSKRKSSPDGDQVAATGVETPAAAAAAGDGGATADAAAAAGSASTAPVPQEEAEGGPGNEEEMQYLNLVEDILDNGVRRGDRTGTGTLSKFGVQMRFSLREERFPLLTTKRVFWRGVAEELLWFVAGCTNANVLKERGIHIWDGNGSREFLDGLGLTEREEGDLGPVYGFQWRHFGAEYTDMHADYTGKGVDQLAECIQKIKTNPEDRRIVLSAWNPADLGKMALPPCHMFCQFYVAEGELSCQMYQRSADMGLGVPFNIASYALLTRLVAQACGLKAGDFVHTIGDAHVYVNHVDALREQLKRKPRPFPTLSINTDETDIDSFEYKHLEVKGYSPYKTIKMKMAV 581
The following BLAST results are available for this feature:
BLAST of NO13G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN76613.11.200e-16255.50conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01270NO13G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01270.1NO13G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01270.1.cds1NO13G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01270.1 ID=NO13G01270.1|Name=NO13G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp
ATGTCTCCCCTCGCTGCCACCGCTGTTGCTGCCGCATCGACCGTCACAAA
GGAGGGTCTGAGGGGTTTTACCATCGTCGTGGCCGCCACCGCCAAGTCCC
TGGGCATTGGCAAGCAAGGCCAACTTCCTTGGAACCTTCCAGAAGACATG
GCACATTTCAAACACCTCACATCGTCCACCACATTGCCCAACAAGACCAA
CGCCGTCATCATGGGCCGTCGGACGTGGCAATCCATCCCCGAGAGATTCC
GCCCCCTGCGAAATCGTCTCAACGTCGTCCTTTCCCGCAATCCCGCAATC
CGCGAGCAACTAAACCTCCCACAAGGTGTGCGTGTTGCGGCCTCGTTACC
CGAGGCATTGGCGTTGTTGTCCACGGGGGAGGATGCAACGGCGGTCGAGA
AAGTGTTTGTGATCGGCGGGGCTGCTGTTTACAAAGAAGCTTTATCCTCC
GACCTATGCGAAGCCATTGAATTCACCGCCATCGATGAGGAAGGGCAGGA
GGGAGGGCAGGGAGGAGAGAGGGAGATTTCGAATAACAGCCCGACGCCGC
TGTTCGCGGATTGTGACGCCTTTTTCCCTACCATCCCTGCCACTGTTTAT
GGACTCGTCACCTCGACCGAGACCTTGACCCAGAATCATTTGCACTTCCG
TTTTCAGCGCTTTGAACGTTTGAATTACAGGGCTTTACCACCTTTCTATG
GCAGCAGTAGCAGCAGCAGCAGCAACAACCACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAACTAA
GGGCAGTGCGTCGGCTCCGGCTGGGGGAGGAAAGAAGGAAGAGGAAAGGA
ACGAAGAAGAGCAGCAATACCTGGATCTTGTCCGCGAAATCATTGAGAAG
GGCAACCATCGGGGGGATCGAACACAGACAGGCACCTTGTCCAAGTTTGG
AGCACAGCTTCGATTTAGCCTCAGGAACAATGTGTTTCCTCTCTTAACGA
CTAAGAGGGTATTTTGGCGGGGGGTCGCGGAGGAGTTGCTGTGGTTTGTG
AGTGGCAAGACAAACTCGAATCTATTGAAAGACAAAAAGATTGGAATTTG
GGACGGAAACTCTAGCAGGGAGTACCTGGACAAAATAGGGTTGAGCAATC
GGGAGGAGGGAGACCTAGGACCGGTGTACGGCTTCCAGTGGCGGCATTTT
GGGGCTGAATACAAGGATATGCACGCGGACTACACCGGGAAGGGCATCGA
TCAGCTGGCAAATGCAATTGAGACGATAAAGAAAAATCCGGAAGATCGAC
GGATCATTGTCTCAGCCTGGAATCCTTCGGATCTGGGGAAGATGGCGTTG
CCCCCGTGTCACATGTTTTGTCAGTTTTATGTGGCAAATGGGGAGCTGTC
CTGCCAGATGTACCAACGCAGCGCGGATATGGGTTTGGGTGTGCCGTTTA
ATATTGCTTCGTATGCATTGCTCACCAGCTTGGTGGCGCAGGTGTGTGGG
TTGGCGCCAGGGGAGTTCGTGCACACAATTGGGGATGCTCACGTTTACTC
GAATCACGTCGAGGCCTTGAAGGAGCAGTTGACGCGAACCCCGGCCAAGT
TTCCTCGGCTCTTCATTAACCCGGACAAGAAATGCATCGACGACTTTGTG
TTTGAGGATTTTCGGATTGAGGGGTACACGCCGCAGGAGAACATCAAAAT
GAAGATGGCGGTGTAG
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protein sequence of NO13G01270.1

>NO13G01270.1-protein ID=NO13G01270.1-protein|Name=NO13G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MSPLAATAVAAASTVTKEGLRGFTIVVAATAKSLGIGKQGQLPWNLPEDM
AHFKHLTSSTTLPNKTNAVIMGRRTWQSIPERFRPLRNRLNVVLSRNPAI
REQLNLPQGVRVAASLPEALALLSTGEDATAVEKVFVIGGAAVYKEALSS
DLCEAIEFTAIDEEGQEGGQGGEREISNNSPTPLFADCDAFFPTIPATVY
GLVTSTETLTQNHLHFRFQRFERLNYRALPPFYGSSSSSSSNNHNNNNNN
NNNNNNNNNNNNNNKTKGSASAPAGGGKKEEERNEEEQQYLDLVREIIEK
GNHRGDRTQTGTLSKFGAQLRFSLRNNVFPLLTTKRVFWRGVAEELLWFV
SGKTNSNLLKDKKIGIWDGNSSREYLDKIGLSNREEGDLGPVYGFQWRHF
GAEYKDMHADYTGKGIDQLANAIETIKKNPEDRRIIVSAWNPSDLGKMAL
PPCHMFCQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTSLVAQVCG
LAPGEFVHTIGDAHVYSNHVEALKEQLTRTPAKFPRLFINPDKKCIDDFV
FEDFRIEGYTPQENIKMKMAV*
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mRNA from alignment at chr13:384593..386308+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01270.1 ID=NO13G01270.1|Name=NO13G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp|location=Sequence derived from alignment at chr13:384593..386308+ (Nannochloropsis oceanica)
ATGTCTCCCCTCGCTGCCACCGCTGTTGCTGCCGCATCGACCGTCACAAA
GGAGGGTCTGAGGGGTTTTACCATCGTCGTGGCCGCCACCGCCAAGTCCC
TGGGCATTGGCAAGCAAGGCCAACTTCCTTGGAACCTTCCAGAAGACATG
GCACATTTCAAACACCTCACATCGTCCACCACATTGCCCAACAAGACCAA
CGCCGTCATCATGGGCCGTCGGACGTGGCAATCCATCCCCGAGAGATTCC
GCCCCCTGCGAAATCGTCTCAACGTCGTCCTTTCCCGCAATCCCGCAATC
CGCGAGCAACTAAACCTCCCACAAGGTGTGCGTGTTGCGGCCTCGTTACC
CGAGGCATTGGCGTTGTTGTCCACGGGGGAGGATGCAACGGCGGTCGAGA
AAGTGTTTGTGATCGGCGGGGCTGCTGTTTACAAAGAAGCTTTATCCTCC
GACCTATGCGAAGCCATTGAATTCACCGCCATCGATGAGGAAGGGCAGGA
GGGAGGGCAGGGAGGAGAGAGGGAGATTTCGAATAACAGCCCGACGCCGC
TGTTCGCGGATTGTGACGCCTTTTTCCCTACCATCCCTGCCACTGTTTAT
GGACTCGTCACCTCGACCGAGACCTTGACCCAGAATCATTTGCACTTCCG
TTTTCAGCGCTTTGAACGTTTGAATTACAGGGCTTTACCACCTTTCTATG
GCAGCAGTAGCAGCAGCAGCAGCAACAACCACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAACTAA
GGGCAGTGCGTCGGCTCCGGCTGGGGGAGGAAAGAAGGAAGAGGAAAGGA
ACGAAGAAGAGCAGCAATACCTGGATCTTGTCCGCGAAATCATTGAGAAG
GGCAACCATCGGGGGGATCGAACACAGACAGGCACCTTGTCCAAGTTTGG
AGCACAGCTTCGATTTAGCCTCAGGAACAATGTGTTTCCTCTCTTAACGA
CTAAGAGGGTATTTTGGCGGGGGGTCGCGGAGGAGTTGCTGTGGTTTGTG
AGTGGCAAGACAAACTCGAATCTATTGAAAGACAAAAAGATTGGAATTTG
GGACGGAAACTCTAGCAGGGAGTACCTGGACAAAATAGGGTTGAGCAATC
GGGAGGAGGGAGACCTAGGACCGGTGTACGGCTTCCAGTGGCGGCATTTT
GGGGCTGAATACAAGGATATGCACGCGGACTACACCGGGAAGGGCATCGA
TCAGCTGGCAAATGCAATTGAGACGATAAAGAAAAATCCGGAAGATCGAC
GGATCATTGTCTCAGCCTGGAATCCTTCGGATCTGGGGAAGATGGCGTTG
CCCCCGTGTCACATGTTTTGTCAGTTTTATGTGGCAAATGGGGAGCTGTC
CTGCCAGATGTACCAACGCAGCGCGGATATGGGTTTGGGTGTGCCGTTTA
ATATTGCTTCGTATGCATTGCTCACCAGCTTGGTGGCGCAGGTGTGTGGG
TTGGCGCCAGGGGAGTTCGTGCACACAATTGGGGATGCTCACGTTTACTC
GAATCACGTCGAGGCCTTGAAGGAGCAGTTGACGCGAACCCCGGCCAAGT
TTCCTCGGCTCTTCATTAACCCGGACAAGAAATGCATCGACGACTTTGTG
TTTGAGGATTTTCGGATTGAGGGGTACACGCCGCAGGAGAACATCAAAAT
GAAGATGGCGGTGTAG
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Coding sequence (CDS) from alignment at chr13:384593..386308+

>NO13G01270.1 ID=NO13G01270.1|Name=NO13G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at chr13:384593..386308+ (Nannochloropsis oceanica)
ATGTCTCCCCTCGCTGCCACCGCTGTTGCTGCCGCATCGACCGTCACAAA
GGAGGGTCTGAGGGGTTTTACCATCGTCGTGGCCGCCACCGCCAAGTCCC
TGGGCATTGGCAAGCAAGGCCAACTTCCTTGGAACCTTCCAGAAGACATG
GCACATTTCAAACACCTCACATCGTCCACCACATTGCCCAACAAGACCAA
CGCCGTCATCATGGGCCGTCGGACGTGGCAATCCATCCCCGAGAGATTCC
GCCCCCTGCGAAATCGTCTCAACGTCGTCCTTTCCCGCAATCCCGCAATC
CGCGAGCAACTAAACCTCCCACAAGGTGTGCGTGTTGCGGCCTCGTTACC
CGAGGCATTGGCGTTGTTGTCCACGGGGGAGGATGCAACGGCGGTCGAGA
AAGTGTTTGTGATCGGCGGGGCTGCTGTTTACAAAGAAGCTTTATCCTCC
GACCTATGCGAAGCCATTGAATTCACCGCCATCGATGAGGAAGGGCAGGA
GGGAGGGCAGGGAGGAGAGAGGGAGATTTCGAATAACAGCCCGACGCCGC
TGTTCGCGGATTGTGACGCCTTTTTCCCTACCATCCCTGCCACTGTTTAT
GGACTCGTCACCTCGACCGAGACCTTGACCCAGAATCATTTGCACTTCCG
TTTTCAGCGCTTTGAACGTTTGAATTACAGGGCTTTACCACCTTTCTATG
GCAGCAGTAGCAGCAGCAGCAGCAACAACCACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAACTAA
GGGCAGTGCGTCGGCTCCGGCTGGGGGAGGAAAGAAGGAAGAGGAAAGGA
ACGAAGAAGAGCAGCAATACCTGGATCTTGTCCGCGAAATCATTGAGAAG
GGCAACCATCGGGGGGATCGAACACAGACAGGCACCTTGTCCAAGTTTGG
AGCACAGCTTCGATTTAGCCTCAGGAACAATGTGTTTCCTCTCTTAACGA
CTAAGAGGGTATTTTGGCGGGGGGTCGCGGAGGAGTTGCTGTGGTTTGTG
AGTGGCAAGACAAACTCGAATCTATTGAAAGACAAAAAGATTGGAATTTG
GGACGGAAACTCTAGCAGGGAGTACCTGGACAAAATAGGGTTGAGCAATC
GGGAGGAGGGAGACCTAGGACCGGTGTACGGCTTCCAGTGGCGGCATTTT
GGGGCTGAATACAAGGATATGCACGCGGACTACACCGGGAAGGGCATCGA
TCAGCTGGCAAATGCAATTGAGACGATAAAGAAAAATCCGGAAGATCGAC
GGATCATTGTCTCAGCCTGGAATCCTTCGGATCTGGGGAAGATGGCGTTG
CCCCCGTGTCACATGTTTTGTCAGTTTTATGTGGCAAATGGGGAGCTGTC
CTGCCAGATGTACCAACGCAGCGCGGATATGGGTTTGGGTGTGCCGTTTA
ATATTGCTTCGTATGCATTGCTCACCAGCTTGGTGGCGCAGGTGTGTGGG
TTGGCGCCAGGGGAGTTCGTGCACACAATTGGGGATGCTCACGTTTACTC
GAATCACGTCGAGGCCTTGAAGGAGCAGTTGACGCGAACCCCGGCCAAGT
TTCCTCGGCTCTTCATTAACCCGGACAAGAAATGCATCGACGACTTTGTG
TTTGAGGATTTTCGGATTGAGGGGTACACGCCGCAGGAGAACATCAAAAT
GAAGATGGCGGTGTAG
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Synonyms
Publications