NO13G01260.1, NO13G01260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01260.1
Unique NameNO13G01260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr13:382960..384273 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:382960..384273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01260.1 vs.
Match: EWM21796.1 (thymidylate kinase [Nannochloropsis gaditana])

HSP 1 Score: 365.9 bits (938), Expect = 1.400e-97
Identity = 210/326 (64.42%), Postives = 239/326 (73.31%), Query Frame = 0 
Query:   19 KPTVARLLSWTWRNAAVFSTLCGSWRPTLLVFPAAAAASSLTTTTAIWLRPSSSFAAASAAAFYRSSNCKIRPF-RPLSVVSTTRLLMTAGGSSQASTDSSGTGTISTTADIQPTKQRGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDSIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLWP 344
            + T+AR+L+WTWRN AV S+LC ++RP +L         S +TTT   LR  SS  + ++A     +    RP   P  +    R  MTAGGS + +   SG  +   +     +K RGA IVLEGVDRCGKTTQVAR+VK+L A G AAEAIRFPDRTTTIG MINAYLA ATDLDD  IHLLFSANRWEA+ASL SKLAAG TLVCDRYAYSGVAFSAAK GMD +WCKQCDRGLP+PDAVIYLDIS EAAA RG+YGEERYE Q MQG+VRENFQKLMEGDSIWHVVDA  +LE+VSE V KV MAT K+V E    L TLWP
Sbjct:   10 RQTLARILAWTWRNVAVLSSLC-AFRPPVLHH----LLESCSTTTQ--LRAHSSLISFASALLDTGN----RPVGHPPFITVNRRPFMTAGGSIEKAYTESGDASSLPSF----SKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWP 320
The following BLAST results are available for this feature:
BLAST of NO13G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21796.11.400e-9764.42thymidylate kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01260NO13G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01260.1NO13G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01260.1.cds1NO13G01260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01260.1.cds2NO13G01260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01260.1 ID=NO13G01260.1|Name=NO13G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
ATGGAGGAAGCACAGGCCCTAACCACCCGCAGCAGCACGACAAAAAAAAA
CCAAAAACCAACGGTGGCGCGTTTACTTTCCTGGACGTGGCGGAACGCGG
CCGTGTTTTCTACCTTGTGTGGTTCGTGGCGGCCGACTCTCTTGGTCTTT
CCAGCTGCCGCCGCAGCATCATCCCTTACTACTACGACGGCTATCTGGCT
ACGCCCTTCCTCCTCCTTTGCCGCCGCCAGTGCCGCTGCTTTTTACAGAA
GCAGCAATTGTAAGATTCGTCCCTTTCGTCCCCTTTCAGTCGTCAGCACT
ACTCGCTTGCTCATGACGGCCGGAGGCTCTTCTCAGGCCTCAACTGACAG
CTCCGGCACCGGCACGATTAGCACCACCGCGGACATTCAACCCACCAAAC
AGCGCGGGGCATTAATCGTTCTGGAAGGCGTAGACCGTTGCGGAAAAACC
ACGCAAGTCGCCCGGCTTGTCAAGTCGTTGCGCGCGAATGGGTTGGCGGC
GGAAGCTATCCGATTTCCAGACCGCACTACTACCATCGGCACGATGATCA
ATGCGTACCTTGCCAAGGCAACGGATTTAGACGACCACGCTATCCATCTT
CTGTTCTCGGCTAATCGCTGGGAGGCGGTGGCGTCTTTACATAGCAAGCT
GGCGGCAGGGACGACATTGGTGTGTGATCGCTACGCGTATAGCGGGGTGG
CCTTCTCGGCGGCCAAACAAGGGATGGACATTGAATGGTGCAAGCAATGC
GACCGCGGGTTGCCGAAACCGGATGCGGTGATTTATTTGGATATTTCAGT
GGAGGCCGCGGCGGGGCGCGGGCAGTATGGGGAGGAGAGGTACGAGACAC
AGGAGATGCAAGGGAAGGTGAGGGAGAACTTTCAGAAGTTAATGGAGGGG
GATTCAATCTGGCATGTTGTGGACGCAGCAGGGACGCTGGAGGAGGTGAG
TGAGGGGGTGGGGAAGGTGGGTATGGCGACGGTGAAGAAGGTGGGGGAGG
GAGAGAGGGGCCTTGAGACATTGTGGCCCTTGTGA
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protein sequence of NO13G01260.1

>NO13G01260.1-protein ID=NO13G01260.1-protein|Name=NO13G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MEEAQALTTRSSTTKKNQKPTVARLLSWTWRNAAVFSTLCGSWRPTLLVF
PAAAAASSLTTTTAIWLRPSSSFAAASAAAFYRSSNCKIRPFRPLSVVST
TRLLMTAGGSSQASTDSSGTGTISTTADIQPTKQRGALIVLEGVDRCGKT
TQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHL
LFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQC
DRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEG
DSIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLWPL*
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mRNA from alignment at chr13:382960..384273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01260.1 ID=NO13G01260.1|Name=NO13G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp|location=Sequence derived from alignment at chr13:382960..384273- (Nannochloropsis oceanica)
ATGGAGGAAGGTGAGGAGGCTGAGGGCGCCAAAACATTGAATGCACCCGC
CTTCTTCCACGCGTGGTCATCTTCTTCCTTGCATGTCCTCCTCTGCGTGC
TTGTCATCGTAATTTTCATGGTCGTGGAGATCTAGTTGGGGTTGGCATAG
TGGCAAGTGTGCGGCTATATAGAGGTTACCGCGTTCGCCAGAAACCCTGT
GTTGGCGATCGACCACTACGCCGACCTCCCCCTCCCTTCCCACACTGTTT
TCATGCGTTGAGCCCGAACCCACCGCCAACATCGCAAAGCACAGGCCCTA
ACCACCCGCAGCAGCACGACAAAAAAAAACCAAAAACCAACGGTGGCGCG
TTTACTTTCCTGGACGTGGCGGAACGCGGCCGTGTTTTCTACCTTGTGTG
GTTCGTGGCGGCCGACTCTCTTGGTCTTTCCAGCTGCCGCCGCAGCATCA
TCCCTTACTACTACGACGGCTATCTGGCTACGCCCTTCCTCCTCCTTTGC
CGCCGCCAGTGCCGCTGCTTTTTACAGAAGCAGCAATTGTAAGATTCGTC
CCTTTCGTCCCCTTTCAGTCGTCAGCACTACTCGCTTGCTCATGACGGCC
GGAGGCTCTTCTCAGGCCTCAACTGACAGCTCCGGCACCGGCACGATTAG
CACCACCGCGGACATTCAACCCACCAAACAGCGCGGGGCATTAATCGTTC
TGGAAGGCGTAGACCGTTGCGGAAAAACCACGCAAGTCGCCCGGCTTGTC
AAGTCGTTGCGCGCGAATGGGTTGGCGGCGGAAGCTATCCGATTTCCAGA
CCGCACTACTACCATCGGCACGATGATCAATGCGTACCTTGCCAAGGCAA
CGGATTTAGACGACCACGCTATCCATCTTCTGTTCTCGGCTAATCGCTGG
GAGGCGGTGGCGTCTTTACATAGCAAGCTGGCGGCAGGGACGACATTGGT
GTGTGATCGCTACGCGTATAGCGGGGTGGCCTTCTCGGCGGCCAAACAAG
GGATGGACATTGAATGGTGCAAGCAATGCGACCGCGGGTTGCCGAAACCG
GATGCGGTGATTTATTTGGATATTTCAGTGGAGGCCGCGGCGGGGCGCGG
GCAGTATGGGGAGGAGAGGTACGAGACACAGGAGATGCAAGGGAAGGTGA
GGGAGAACTTTCAGAAGTTAATGGAGGGGGATTCAATCTGGCATGTTGTG
GACGCAGCAGGGACGCTGGAGGAGGTGAGTGAGGGGGTGGGGAAGGTGGG
TATGGCGACGGTGAAGAAGGTGGGGGAGGGAGAGAGGGGCCTTGAGACAT
TGTGGCCCTTGTGA
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Coding sequence (CDS) from alignment at chr13:382960..384273-

>NO13G01260.1 ID=NO13G01260.1|Name=NO13G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr13:382960..384273- (Nannochloropsis oceanica)
ATGGAGGAAGCACAGGCCCTAACCACCCGCAGCAGCACGACAAAAAAAAA
CCAAAAACCAACGGTGGCGCGTTTACTTTCCTGGACGTGGCGGAACGCGG
CCGTGTTTTCTACCTTGTGTGGTTCGTGGCGGCCGACTCTCTTGGTCTTT
CCAGCTGCCGCCGCAGCATCATCCCTTACTACTACGACGGCTATCTGGCT
ACGCCCTTCCTCCTCCTTTGCCGCCGCCAGTGCCGCTGCTTTTTACAGAA
GCAGCAATTGTAAGATTCGTCCCTTTCGTCCCCTTTCAGTCGTCAGCACT
ACTCGCTTGCTCATGACGGCCGGAGGCTCTTCTCAGGCCTCAACTGACAG
CTCCGGCACCGGCACGATTAGCACCACCGCGGACATTCAACCCACCAAAC
AGCGCGGGGCATTAATCGTTCTGGAAGGCGTAGACCGTTGCGGAAAAACC
ACGCAAGTCGCCCGGCTTGTCAAGTCGTTGCGCGCGAATGGGTTGGCGGC
GGAAGCTATCCGATTTCCAGACCGCACTACTACCATCGGCACGATGATCA
ATGCGTACCTTGCCAAGGCAACGGATTTAGACGACCACGCTATCCATCTT
CTGTTCTCGGCTAATCGCTGGGAGGCGGTGGCGTCTTTACATAGCAAGCT
GGCGGCAGGGACGACATTGGTGTGTGATCGCTACGCGTATAGCGGGGTGG
CCTTCTCGGCGGCCAAACAAGGGATGGACATTGAATGGTGCAAGCAATGC
GACCGCGGGTTGCCGAAACCGGATGCGGTGATTTATTTGGATATTTCAGT
GGAGGCCGCGGCGGGGCGCGGGCAGTATGGGGAGGAGAGGTACGAGACAC
AGGAGATGCAAGGGAAGGTGAGGGAGAACTTTCAGAAGTTAATGGAGGGG
GATTCAATCTGGCATGTTGTGGACGCAGCAGGGACGCTGGAGGAGGTGAG
TGAGGGGGTGGGGAAGGTGGGTATGGCGACGGTGAAGAAGGTGGGGGAGG
GAGAGAGGGGCCTTGAGACATTGTGGCCCTTGTGA
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Synonyms
Publications